Tmed1 (transmembrane p24 trafficking protein 1)

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Gene: Tmed1 (transmembrane p24 trafficking protein 1) Rattus norvegicus

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Symbol:

Tmed1

Name:

transmembrane p24 trafficking protein 1

RGD ID:

1311679

Description:

Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to be located in endoplasmic reticulum membrane; endoplasmic reticulum-Golgi intermediate compartment membrane; and plasma membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human TMED1 (transmembrane p24 trafficking protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Il1rl1l; interleukin 1 receptor-like 1 ligand; interleukin-1 receptor-like 1 ligand; LOC315461; MGC108769; p24 family protein gamma-1; p24gamma1; transmembrane emp24 domain containing 1; transmembrane emp24 domain-containing protein 1; transmembrane emp24 protein transport domain containing 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMED1 (transmembrane p24 trafficking protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tmed1 (transmembrane p24 trafficking protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmed1 (transmembrane p24 trafficking protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMED1 (transmembrane p24 trafficking protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMED1 (transmembrane p24 trafficking protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmed1 (transmembrane p24 trafficking protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMED1 (transmembrane p24 trafficking protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMED1 (transmembrane p24 trafficking protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmed1 (transmembrane p24 trafficking protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TMED1 (transmembrane p24 trafficking protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tmed1 (transmembrane p24 trafficking protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmed1a (transmembrane p24 trafficking protein 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmed1b (transmembrane p24 trafficking protein 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ERP2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG31787	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	K08E4.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	opm	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ERP4	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	tmed1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	28,336,072 - 28,342,853 (-)	NCBI		GRCr8
mRatBN7.2	8	20,059,937 - 20,063,567 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	20,059,892 - 20,063,677 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	24,091,778 - 24,094,354 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	22,389,615 - 22,392,191 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	20,289,597 - 20,292,172 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	22,540,422 - 22,544,369 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	22,540,424 - 22,542,997 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	22,594,533 - 22,598,482 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	20,611,139 - 20,613,714 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	20,611,139 - 20,613,714 (-)	NCBI
Celera	8	21,451,162 - 21,453,737 (-)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alpha-mannosidosis (ISO)

Charcot-Marie-Tooth disease dominant intermediate B (ISO)

episodic ataxia type 2 (ISO)

familial hypercholesterolemia (ISO)

glutaric acidemia I (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-bromohexadecanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

crocidolite asbestos (ISO)

cytarabine (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

fenvalerate (EXP)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

ivermectin (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

pirinixic acid (ISO)

propanal (ISO)

sodium arsenite (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

triphenyl phosphate (ISO)

Triptolide (EXP)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endoplasmic reticulum to Golgi vesicle-mediated transport (IBA)

Golgi organization (IBA)

intracellular protein transport (IBA)

protein transport (IEA)

Cellular Component

COPII-coated ER to Golgi transport vesicle (IBA)

endoplasmic reticulum (IBA,ISO)

endoplasmic reticulum membrane (IEA)

endoplasmic reticulum-Golgi intermediate compartment (IBA,ISO)

endoplasmic reticulum-Golgi intermediate compartment membrane (IEA)

Golgi apparatus (IBA,IEA,ISO)

plasma membrane (IEA)

Molecular Function

cargo receptor activity (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:9472029	PMID:12237308	PMID:15489334

Genomics

Comparative Map Data

Tmed1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	28,336,072 - 28,342,853 (-)	NCBI		GRCr8
mRatBN7.2	8	20,059,937 - 20,063,567 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	20,059,892 - 20,063,677 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	24,091,778 - 24,094,354 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	22,389,615 - 22,392,191 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	20,289,597 - 20,292,172 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	22,540,422 - 22,544,369 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	22,540,424 - 22,542,997 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	22,594,533 - 22,598,482 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	20,611,139 - 20,613,714 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	20,611,139 - 20,613,714 (-)	NCBI
Celera	8	21,451,162 - 21,453,737 (-)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

TMED1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	10,832,067 - 10,836,212 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	10,832,067 - 10,836,318 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	10,942,743 - 10,946,888 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	10,804,114 - 10,807,983 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	10,804,114 - 10,807,983	NCBI
Celera	19	10,837,959 - 10,841,828 (-)	NCBI		Celera
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	10,520,875 - 10,525,115 (-)	NCBI		HuRef
CHM1_1	19	10,943,980 - 10,948,220 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	10,959,078 - 10,963,224 (-)	NCBI		T2T-CHM13v2.0

Tmed1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	21,418,676 - 21,421,530 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	21,418,849 - 21,421,548 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	21,507,380 - 21,510,234 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	21,507,553 - 21,510,252 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	21,311,824 - 21,314,630 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	21,257,782 - 21,260,588 (-)	NCBI		MGSCv36	mm8
Celera	9	18,775,983 - 18,778,789 (-)	NCBI		Celera
Cytogenetic Map	9	A3	NCBI
cM Map	9	7.81	NCBI

Tmed1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	1,934,920 - 1,938,208 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	1,934,920 - 1,938,208 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMED1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	15,752,619 - 15,756,706 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	14,751,212 - 14,755,086 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	10,386,041 - 10,389,905 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	11,107,511 - 11,111,744 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	11,107,511 - 11,111,744 (-)	Ensembl	panpan1.1		panPan2

TMED1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	50,395,862 - 50,399,118 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	50,396,005 - 50,407,535 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	50,268,438 - 50,280,141 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	50,917,471 - 50,929,210 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	50,917,621 - 50,929,195 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	50,126,288 - 50,137,982 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	50,553,831 - 50,565,514 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	50,795,278 - 50,806,997 (+)	NCBI		UU_Cfam_GSD_1.0

Tmed1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	209,305,083 - 209,308,562 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	1,042,139 - 1,049,628 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936659	1,046,144 - 1,049,628 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMED1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	69,568,354 - 69,576,066 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	69,573,128 - 69,576,421 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	70,006,707 - 70,009,745 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMED1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	9,829,529 - 9,833,559 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	9,830,086 - 9,833,529 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	10,119,327 - 10,123,764 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmed1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	2,805,519 - 2,808,249 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	2,805,015 - 2,808,232 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tmed1
7 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	393
Count of miRNA genes:	220
Interacting mature miRNAs:	261
Transcripts:	ENSRNOT00000061009
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
9590084	Insglur5	Insulin/glucose ratio QTL 5	18.54	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	8	1	24597739	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
2317882	Alcrsp24	Alcohol response QTL 24	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	8	1	25902202	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat

Markers in Region

BE100267

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	20,062,581 - 20,062,750 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	22,543,067 - 22,543,235	NCBI	Rnor6.0
Rnor_5.0	8	22,597,178 - 22,597,346	UniSTS	Rnor5.0
RGSC_v3.4	8	20,613,784 - 20,613,952	UniSTS	RGSC3.4
Celera	8	21,453,807 - 21,453,975	UniSTS
RH 3.4 Map	8	207.21	UniSTS
Cytogenetic Map	8	q13	UniSTS

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC091167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000061009 ⟹ ENSRNOP00000057728

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	20,059,892 - 20,062,510 (-)	Ensembl
Rnor_6.0 Ensembl	8	22,540,424 - 22,542,997 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100773 ⟹ ENSRNOP00000084813

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	20,059,941 - 20,063,677 (-)	Ensembl

RefSeq Acc Id:

NM_001013432 ⟹ NP_001013450

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,336,072 - 28,338,647 (-)	NCBI
mRatBN7.2	8	20,059,937 - 20,062,512 (-)	NCBI
Rnor_6.0	8	22,540,422 - 22,542,997 (-)	NCBI
Rnor_5.0	8	22,594,533 - 22,598,482 (-)	NCBI
RGSC_v3.4	8	20,611,139 - 20,613,714 (-)	RGD
Celera	8	21,451,162 - 21,453,737 (-)	RGD

Sequence:

show sequence

CCCGGATGATGGCGGCCGGCGCGGCCGTAGCACTGGCCCTGTGGCTACTCCTGCCAGCAGTAGG
AGTGGGAGAGGCGGGGCCGCCGCCCATCCAGGACGGCGAGTTCACGTTTCTGCTTCCCGCCGGG
AGGAAGCAGTGTTTCTATCAGTCCGCACCGGCCAATGCTAGTCTTGAGACCGAGTACCAGGTGA
TCGGAGGTGCTGGGCTGGACGTGGACTTCACCTTGGAGAGCCCTCAGGGTGTGCTGTTGGTCAG
CGAGTCTCGAAAAGCTGATGGGGTGCACACGGTGGAGCCTACTGAGGCCGGAGACTACAGGCTG
TGCTTTGATAACTCCTTCAGCACCATCTCAGAGAAGCTTGTGTTCTTTGAGCTCATCTTTGACA
GCTTCCAAGATGAGGAGGAGGTAGAAGGTTGGGCTGAGGCTGTAGAGCCAGAGGAAATGCTTGA
TGTGAAAATGGAAGACATCAAGGAATCCATAGAGACCATGAGGACCCGGCTGGAACGGAGCATC
CAGATGCTCACTCTGCTCCGAGCCTTTGAGGCTCGTGATCGTAATCTTCAAGAAGATAACCTCG
AGCGGGTCAACTTCTGGTCAGCTGCCAATGTGGCTGTGCTGCTGCTGGTGGCCGTCCTGCAGGT
CTGCACACTGAAGCGCTTCTTCCATGACAAGTGCCCTGTGCCCACGTAGCCCCAGCCACAGAGG
ATGACGGAAACAGGAGGGCATGGGTGTGTGACTTGCTGGACACCTCCCGGACTCAGATGAGACA
CTGCACAGTTGGGTCCTTAGCAGTGGCCCCATGTGTGTCCCTTCCTCAGTGACCAGGGAGTGCC
AATGGCTCGTAGACCCCTGGGGGGGGGGTGGCTCAGCAACAGTGCCTGTTTCGTGGAAGGTGGA
CATGTTGGGCGCTGCAGTATGGGGACATGTTACCCTGGCTTTCTCCTGAAATTGTGCCTTAGCT
TCAGTCTTCCAGCCATTAGGATGGGGTCAGGCTGTGGAGCTGCCCCTGCCCTCCAACTAGACCC
CCAGCTTGTGTCTCTGCTTTGCTCCTGGGGGTAAGCCTTCTTTACTAGGGCCTGGGAAGGAGAC
ACGTCGGCAGCACACGTCTTGCCAGGACAGTCACTTTTATTGGAAAGGAAGGAGCCCTGGTCCC
TTGGCCCAGAGGGCCAAGCTAGTTGATGGTTTGGTTGAGAACTGTAGAGTGGACCCCTTCCTTC
TCTCTGGGTGCAGCACCTCAGACAAGGCTGAGGTGCCAGAGCTGGCCTATGAGCCTAAGGGACA
AGGGCATTCGTCCTGGGCACTGGAGTCAATAAATTATGGTCAGAAAAGTTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242644 ⟹ XP_006242706

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,336,072 - 28,342,853 (-)	NCBI
mRatBN7.2	8	20,059,937 - 20,063,567 (-)	NCBI
Rnor_6.0	8	22,540,422 - 22,544,369 (-)	NCBI
Rnor_5.0	8	22,594,533 - 22,598,482 (-)	NCBI

Sequence:

show sequence

TAAAAGAGCAGTCAAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAAAGGTGTGATTTCTT
TTTATCGTCTTGTATTTTGTGTGTTCCAGTTTTGTTCCCACTGCTGTGATATAATTCCTTACCA
AAATCAACTTGGGGAAGAAGCAGGCCGTTTAGCCCACAAGTCCCAATCACAGATGCTCAGTGAG
GGAGTCAGGGCAGGAACTGGGGTACAGCGGCTTGCCGGCTTGCTCAGCTGCCTTTCTTGTACAG
CTCATGCCCACCTGCCTAGGGAAAGTACCATCTGTGCTGGGCTAGACCTTCCAGCATCAATTAG
CAAAGAAGAAGATGCCCACAAGGCAGTTCCTCAAGTGAGACTCAATTTGCCAGATTAGTTTGTG
TTGAGTGGACAAGAACTAGCCACACAATGTTTTGTCTGTGAGTATGTGTGTACATGGAGGTCAG
AGAACACTTGTGGGAGTCAATTCTGTCCTTCCACTATTGTAGTACATGGGGACTGAACTAAGGT
CAGCACCAAGTGTCTCTATTCCCGGAGTCATTCGAAGCCCAAATAGATCCCTCGATTTTTGCTG
GTCTGGAACTATGTAGTTCCATACCAGTTCGAGAGGATGGCCTCTCTTTCCCAGCTCCTGACTC
AGCCTACCAAGTACTGTAATTACTGCATGTGTCAGCACAGATACACTTGGACCTGTTGACCCAA
AGGTTTGAGGCACATTGTTTGCAGGGTGAGCCAGTATTCTATTCACTATCTAATATTCCATCAC
CCTCAACTTAAGAGACCAAACCCCTTATAAGGGATGGTGTAAGGTGTAAAGGGAAATCAGGGAT
AGCATTGATTCTGGGGAGGCTATGCTCAGACCCATCGCCAGAATCCCAATTTTGGAGTACTAGC
ACCCAAGCTATATTACAGCTCGAAGCGCCCTTCACACAAGTCATGACCAGAATCCAGCTTAGCC
GCCGTCCTCGGCCCGCTCCGCCTACACTTGACTGACCAATGGGCGACATGCACCTTCAATAGGG
GACGGCCGACAGCAGGCGGTGCAACGGAAGGACCCGCAAACCTCCCCATTTAGTCATCTTAATT
TTTGCCTGTAAGGAAGTGCTTCGCCATTTTTAGGTCTGTCGTTTCCCCCACCAAATCCAGTGTT
TAATAGCAGACCTGAAGAAGTCTCAAGAAATCTGCAGTAGCCTTAGAATGCTTTCTAGCAGATT
AGGCAATTAACCCGGGCAGCTCGCCTCTCTAGGGCCCTTCACTCAGCATTCCGCGGCTTTGGGG
TCGAACAGAATCTGAAGCCAATGGGCTTTGCCGAAATGAGAAGTGGGCAGAGCCAATCCTTAAA
GGATCCACGCCCCGTGAGTAGAGGGTGACCCGGATGATGGCGGCCGGCGCGGCCGTAGCACTGG
CCCTGTGGCTACTCCTGCCAGCAGTAGGAGTGGGAGAGGCGGGGCCGCCGCCCATCCAGGACGG
CGAGTTCACGTTTCTGCTTCCCGCCGGGAGGAAGCAGTGTTTCTATCAGTCCGCACCGGCCAAT
GCTAGTCTTGAGACCGAGTACCAGTTTGATAACTCTAGGGTAGAAGTGGAGAACCGACTCCTAC
AAGTAGCCCTCCAATCTCCACAGGCACTACTCCTCTACCCCAAGCAAAGAAATGGGATTTTTGT
GGTGATCGGAGGTGCTGGGCTGGACGTGGACTTCACCTTGGAGAGCCCTCAGGGTGTGCTGTTG
GTCAGCGAGTCTCGAAAAGCTGATGGGGTGCACACGGTGGAGCCTACTGAGGCCGGAGACTACA
GGCTGTGCTTTGATAACTCCTTCAGCACCATCTCAGAGAAGCTTGTGTTCTTTGAGCTCATCTT
TGACAGCTTCCAAGATGAGGAGGAGGTAGAAGGTTGGGCTGAGGCTGTAGAGCCAGAGGAAATG
CTTGATGTGAAAATGGAAGACATCAAGGAATCCATAGAGACCATGAGGACCCGGCTGGAACGGA
GCATCCAGATGCTCACTCTGCTCCGAGCCTTTGAGGCTCGTGATCGTAATCTTCAAGAAGATAA
CCTCGAGCGGGTCAACTTCTGGTCAGCTGCCAATGTGGCTGTGCTGCTGCTGGTGGCCGTCCTG
CAGGTCTGCACACTGAAGCGCTTCTTCCATGACAAGTGCCCTGTGCCCACGTAGCCCCAGCCAC
AGAGGATGACGGAAACAGGAGGGCATGGGTGTGTGACTTGCTGGACACCTCCCGGACTCAGATG
AGACACTGCACAGTTGGGTCCTTAGCAGTGGCCCCATGTGTGTCCCTTCCTCAGTGACCAGGGA
GTGCCAATGGCTCGTAGACCCCTGGGGGGGGGGTGGCTCAGCAACAGTGCCTGTTTCGTGGAAG
GTGGACATGTTGGGCGCTGCAGTATGGGGACATGTTACCCTGGCTTTCTCCTGAAATTGTGCCT
TAGCTTCAGTCTTCCAGCCATTAGGATGGGGTCAGGCTGTGGAGCTGCCCCTGCCCTCCAACTA
GACCCCCAGCTTGTGTCTCTGCTTTGCTCCTGGGGGTAAGCCTTCTTTACTAGGGCCTGGGAAG
GAGACACGTCGGCAGCACACGTCTTGCCAGGACAGTCACTTTTATTGGAAAGGAAGGAGCCCTG
GTCCCTTGGCCCAGAGGGCCAAGCTAGTTGATGGTTTGGTTGAGAACTGTAGAGTGGACCCCTT
CCTTCTCTCTGGGTGCAGCACCTCAGACAAGGCTGAGGTGCCAGAGCTGGCCTATGAGCCTAAG
GGACAAGGGCATTCGTCCTGGGCACTGGAGTCAATAAATTATGGTCAGAAAAGTTAA

hide sequence

RefSeq Acc Id:

XM_008765940 ⟹ XP_008764162

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,336,072 - 28,342,853 (-)	NCBI
mRatBN7.2	8	20,059,937 - 20,063,564 (-)	NCBI
Rnor_6.0	8	22,540,422 - 22,544,367 (-)	NCBI

Sequence:

show sequence

AAAGAGCAGTCAAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAAAGGTGTGATTTCTTTT
TATCGTCTTGTATTTTGTGTGTTCCAGTTTTGTTCCCACTGCTGTGATATAATTCCTTACCAAA
ATCAACTTGGGGAAGAAGCAGGCCGTTTAGCCCACAAGTCCCAATCACAGATGCTCAGTGAGGG
AGTCAGGGCAGGAACTGGGGTACAGCGGCTTGCCGGCTTGCTCAGCTGCCTTTCTTGTACAGCT
CATGCCCACCTGCCTAGGGAAAGTACCATCTGTGCTGGGCTAGACCTTCCAGCATCAATTAGCA
AAGAAGAAGATGCCCACAAGGCAGTTCCTCAAGTGAGACTCAATTTGCCAGATTAGTTTGTGTT
GAGTGGACAAGAACTAGCCACACAATGTTTTGTCTGTGAGTATGTGTGTACATGGAGGTCAGAG
AACACTTGTGGGAGTCAATTCTGTCCTTCCACTATTGTAGTACATGGGGACTGAACTAAGGTCA
GCACCAAGTGTCTCTATTCCCGGAGTCATTCGAAGCCCAAATAGATCCCTCGATTTTTGCTGGT
CTGGAACTATGTAGTTCCATACCAGTTCGAGAGGATGGCCTCTCTTTCCCAGCTCCTGACTCAG
CCTACCAAGTACTGTAATTACTGCATGTGTCAGCACAGATACACTTGGACCTGTTGACCCAAAG
GTTTGAGGCACATTGTTTGCAGGGTGAGCCAGTATTCTATTCACTATCTAATATTCCATCACCC
TCAACTTAAGAGACCAAACCCCTTATAAGGGATGGTGTAAGGTGTAAAGGGAAATCAGGGATAG
CATTGATTCTGGGGAGGCTATGCTCAGACCCATCGCCAGAATCCCAATTTTGGAGTACTAGCAC
CCAAGCTATATTACAGCTCGAAGCGCCCTTCACACAAGTCATGACCAGAATCCAGCTTAGCCGC
CGTCCTCGGCCCGCTCCGCCTACACTTGACTGACCAATGGGCGACATGCACCTTCAATAGGGGA
CGGCCGACAGCAGGCGGTGCAACGGAAGGACCCGCAAACCTCCCCATTTAGTCATCTTAATTTT
TGCCTGTAAGGAAGTGCTTCGCCATTTTTAGGTCTGTCGTTTCCCCCACCAAATCCAGTGTTTA
ATAGCAGACCTGAAGAAGTCTCAAGAAATCTGCAGTAGCCTTAGAATGCTTTCTAGCAGATTAG
GCAATTAACCCGGGCAGCTCGCCTCTCTAGGGCCCTTCACTCAGCATTCCGCGGCTTTGGGGTC
GAACAGAATCTGAAGCCAATGGGCTTTGCCGAAATGAGAAGTGGGCAGAGCCAATCCTTAAAGG
ATCCACGCCCCGTGAGTAGAGGGTGACCCGGATGATGGCGGCCGGCGCGGCCGTAGCACTGGCC
CTGTGGCTACTCCTGCCAGCAGTAGGAGTGGGAGAGGCGGGGCCGCCGCCCATCCAGGACGGCG
AGTTCACGTTTCTGCTTCCCGCCGGGAGGAAGCAGTGTTTCTATCAGTCCGCACCGGCCAATGC
TAGTCTTGAGACCGAGTACCAGGCACTACTCCTCTACCCCAAGCAAAGAAATGGGATTTTTGTG
GTGATCGGAGGTGCTGGGCTGGACGTGGACTTCACCTTGGAGAGCCCTCAGGGTGTGCTGTTGG
TCAGCGAGTCTCGAAAAGCTGATGGGGTGCACACGGTGGAGCCTACTGAGGCCGGAGACTACAG
GCTGTGCTTTGATAACTCCTTCAGCACCATCTCAGAGAAGCTTGTGTTCTTTGAGCTCATCTTT
GACAGCTTCCAAGATGAGGAGGAGGTAGAAGGTTGGGCTGAGGCTGTAGAGCCAGAGGAAATGC
TTGATGTGAAAATGGAAGACATCAAGGAATCCATAGAGACCATGAGGACCCGGCTGGAACGGAG
CATCCAGATGCTCACTCTGCTCCGAGCCTTTGAGGCTCGTGATCGTAATCTTCAAGAAGATAAC
CTCGAGCGGGTCAACTTCTGGTCAGCTGCCAATGTGGCTGTGCTGCTGCTGGTGGCCGTCCTGC
AGGTCTGCACACTGAAGCGCTTCTTCCATGACAAGTGCCCTGTGCCCACGTAGCCCCAGCCACA
GAGGATGACGGAAACAGGAGGGCATGGGTGTGTGACTTGCTGGACACCTCCCGGACTCAGATGA
GACACTGCACAGTTGGGTCCTTAGCAGTGGCCCCATGTGTGTCCCTTCCTCAGTGACCAGGGAG
TGCCAATGGCTCGTAGACCCCTGGGGGGGGGGTGGCTCAGCAACAGTGCCTGTTTCGTGGAAGG
TGGACATGTTGGGCGCTGCAGTATGGGGACATGTTACCCTGGCTTTCTCCTGAAATTGTGCCTT
AGCTTCAGTCTTCCAGCCATTAGGATGGGGTCAGGCTGTGGAGCTGCCCCTGCCCTCCAACTAG
ACCCCCAGCTTGTGTCTCTGCTTTGCTCCTGGGGGTAAGCCTTCTTTACTAGGGCCTGGGAAGG
AGACACGTCGGCAGCACACGTCTTGCCAGGACAGTCACTTTTATTGGAAAGGAAGGAGCCCTGG
TCCCTTGGCCCAGAGGGCCAAGCTAGTTGATGGTTTGGTTGAGAACTGTAGAGTGGACCCCTTC
CTTCTCTCTGGGTGCAGCACCTCAGACAAGGCTGAGGTGCCAGAGCTGGCCTATGAGCCTAAGG
GACAAGGGCATTCGTCCTGGGCACTGGAGTCAATAAATTATGGTCAGAAAAGTTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001013450	(Get FASTA)	NCBI Sequence Viewer
	XP_006242706	(Get FASTA)	NCBI Sequence Viewer
	XP_008764162	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91167	(Get FASTA)	NCBI Sequence Viewer
	EDL78288	(Get FASTA)	NCBI Sequence Viewer
	EDL78289	(Get FASTA)	NCBI Sequence Viewer
	EDL78290	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000057728.2
	ENSRNOP00000084813.1
	ENSRNOP00065015410
GenBank Protein	Q5BK85	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001013450 ⟸ NM_001013432
- Peptide Label:	precursor
- UniProtKB:	Q5BK85 (UniProtKB/Swiss-Prot), A6JNS6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMAAGAAVALALWLLLPAVGVGEAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLETEYQVIG GAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYRLCFDNSFSTISEKLVFFELIFDSF QDEEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEDNLER VNFWSAANVAVLLLVAVLQVCTLKRFFHDKCPVPT hide sequence

RefSeq Acc Id:

XP_006242706 ⟸ XM_006242644

- Peptide Label:

isoform X1

- Sequence:

show sequence

MMAAGAAVALALWLLLPAVGVGEAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLETEYQFDN
SRVEVENRLLQVALQSPQALLLYPKQRNGIFVVIGGAGLDVDFTLESPQGVLLVSESRKADGVH
TVEPTEAGDYRLCFDNSFSTISEKLVFFELIFDSFQDEEEVEGWAEAVEPEEMLDVKMEDIKES
IETMRTRLERSIQMLTLLRAFEARDRNLQEDNLERVNFWSAANVAVLLLVAVLQVCTLKRFFHD
KCPVPT

hide sequence

RefSeq Acc Id:	XP_008764162 ⟸ XM_008765940
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A1Y9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMAAGAAVALALWLLLPAVGVGEAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLETEYQALL LYPKQRNGIFVVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYRLCFDNSFSTI SEKLVFFELIFDSFQDEEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAF EARDRNLQEDNLERVNFWSAANVAVLLLVAVLQVCTLKRFFHDKCPVPT hide sequence

Ensembl Acc Id:

ENSRNOP00000057728 ⟸ ENSRNOT00000061009

Ensembl Acc Id:

ENSRNOP00000084813 ⟸ ENSRNOT00000100773

Protein Domains

GOLD

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5BK85-F1-model_v2	AlphaFold	Q5BK85	1-227	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695781

Promoter ID:

EPDNEW_R6306

Type:

multiple initiation site

Name:

Tmed1_1

Description:

transmembrane p24 trafficking protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	22,542,999 - 22,543,059	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311679	AgrOrtholog
BioCyc Gene	G2FUF-31418	BioCyc
Ensembl Genes	ENSRNOG00000008037	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00065012338	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000061009.5	UniProtKB/Swiss-Prot
	ENSRNOT00000100773.1	UniProtKB/TrEMBL
	ENSRNOT00065020091	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7324543	IMAGE-MGC_LOAD
InterPro	Emp24-like	UniProtKB/TrEMBL
	GOLD_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GOLD_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TMP21-related	UniProtKB/Swiss-Prot
KEGG Report	rno:315461	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:108769	IMAGE-MGC_LOAD
NCBI Gene	315461	ENTREZGENE
PANTHER	PTHR22811	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	EMP24_GP25L	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Tmed1	PhenoGen
PROSITE	GOLD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008037	RatGTEx
	ENSRNOG00065012338	RatGTEx
SMART	EMP24_GP25L	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF101576	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6A1Y9	ENTREZGENE, UniProtKB/TrEMBL
	A6JNS6	ENTREZGENE, UniProtKB/TrEMBL
	Q5BK85	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-19	Tmed1	transmembrane p24 trafficking protein 1	Tmed1	transmembrane emp24 protein transport domain containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Tmed1	transmembrane emp24 protein transport domain containing 1	Tmed1	transmembrane emp24 domain containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-07-28	Tmed1	transmembrane emp24 domain containing 1	Il1rl1l	interleukin 1 receptor-like 1 ligand	Symbol and Name updated to reflect Human and Mouse nomenclature	1299863	APPROVED
2005-12-06	Il1rl1l	interleukin 1 receptor-like 1 ligand	Il1rl1l_predicted	interleukin 1 receptor-like 1 ligand (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Il1rl1l_predicted	interleukin 1 receptor-like 1 ligand (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar