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ONTOLOGY REPORT - ANNOTATIONS


Term:oxidative phosphorylation
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Accession:GO:0006119 term browser browse the term
Definition:The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
Synonyms:exact_synonym: respiratory-chain phosphorylation
 xref: Wikipedia:Oxidative_phosphorylation


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oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak2 adenylate kinase 2 JBrowse link 4 128,993,224 129,011,529 RGD:9068941
G Chchd10 coiled-coil-helix-coiled-coil-helix domain containing 10 JBrowse link 10 75,933,130 75,937,750 RGD:2290270
G Fxn frataxin JBrowse link 19 24,259,545 24,280,590 RGD:2290270
G Msh2 mutS homolog 2 JBrowse link 17 87,672,532 87,723,713 RGD:2290270
G Nipsnap2 nipsnap homolog 2 JBrowse link 5 129,725,016 129,758,327 RGD:2290270
G Surf1 surfeit gene 1 JBrowse link 2 26,913,378 26,916,610 RGD:2290270
G Tefm transcription elongation factor, mitochondrial JBrowse link 11 80,136,674 80,142,871 RGD:2290270
ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G mt-Co2 cytochrome c oxidase II, mitochondrial JBrowse link MT 7,013 7,696 RGD:2290270
G mt-Nd4 NADH dehydrogenase 4, mitochondrial JBrowse link MT 10,167 11,544 RGD:2290270
G mt-Nd4l NADH dehydrogenase 4L, mitochondrial JBrowse link MT 9,877 10,173 RGD:2290270
G mt-Nd5 NADH dehydrogenase 5, mitochondrial JBrowse link MT 11,742 13,565 RGD:2290270
G Ndufa7 NADH:ubiquinone oxidoreductase subunit A7 JBrowse link 17 33,824,572 33,838,316 RGD:2290270
G Ndufs1 NADH:ubiquinone oxidoreductase core subunit S1 JBrowse link 1 63,143,592 63,176,822 RGD:2290270
mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bid BH3 interacting domain death agonist JBrowse link 6 120,893,119 120,917,062 RGD:2290270
G Coq7 demethyl-Q 7 JBrowse link 7 118,509,659 118,533,356 RGD:2290270
G Dguok deoxyguanosine kinase JBrowse link 6 83,480,214 83,506,969 RGD:2290270
G Mtch2 mitochondrial carrier 2 JBrowse link 2 90,847,090 90,866,810 RGD:2290270
G Ndufa12 NADH:ubiquinone oxidoreductase subunit A12 JBrowse link 10 94,199,035 94,221,440 RGD:2290270
G Ndufb6 NADH:ubiquinone oxidoreductase subunit B6 JBrowse link 4 40,270,591 40,279,421 RGD:2290270
G Ndufs2 NADH:ubiquinone oxidoreductase core subunit S2 JBrowse link 1 171,234,853 171,251,686 RGD:2290270
G Ndufv1 NADH:ubiquinone oxidoreductase core subunit V1 JBrowse link 19 4,007,499 4,012,755 RGD:2290270
G Ndufv3 NADH:ubiquinone oxidoreductase core subunit V3 JBrowse link 17 31,520,115 31,531,326 RGD:2290270
G Snca synuclein, alpha JBrowse link 6 60,731,573 60,829,855 RGD:2290270
G Taz tafazzin JBrowse link X 74,281,900 74,295,319 RGD:2290270
mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp5a1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 JBrowse link 18 77,773,768 77,782,869 RGD:2290270
G Atp5b ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit JBrowse link 10 128,083,307 128,090,388 RGD:2290270
G Atp5c1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 JBrowse link 2 10,056,030 10,080,510 RGD:2290270
G Atp5d ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit JBrowse link 10 80,138,698 80,145,828 RGD:2290270
G Atp5e ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit JBrowse link 2 174,461,075 174,464,101 RGD:9068941
G Atp5h ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D JBrowse link 11 115,415,691 115,419,919 RGD:2290270
G Atp5j ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F JBrowse link 16 84,827,871 84,835,857 RGD:2290270
G Atp5j2 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 JBrowse link 5 145,183,704 145,191,541 RGD:2290270
G Atp5k ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E JBrowse link 5 108,433,246 108,434,399 RGD:9068941
G Atp5l ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G JBrowse link 9 44,913,248 44,920,742 RGD:2290270
G Atp5o ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit JBrowse link 16 91,925,223 91,931,630 RGD:2290270
G Atp5pb ATP synthase peripheral stalk-membrane subunit b JBrowse link 3 105,942,698 105,959,263 RGD:2290270
G Cox5b cytochrome c oxidase subunit 5B JBrowse link 1 36,691,487 36,693,388 RGD:2290270
G Cyc1 cytochrome c-1 JBrowse link 15 76,343,513 76,346,260 RGD:2290270
G mt-Atp6 ATP synthase 6, mitochondrial JBrowse link MT 7,927 8,607 RGD:2290270
G mt-Atp8 ATP synthase 8, mitochondrial JBrowse link MT 7,766 7,969 RGD:9068941
G Stoml2 stomatin (Epb7.2)-like 2 JBrowse link 4 43,027,690 43,031,976 RGD:2290270
mitochondrial electron transport, cytochrome c to oxygen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Afg1l AFG1 like ATPase JBrowse link 10 42,312,581 42,478,565 RGD:2290270
G Cox4i1 cytochrome c oxidase subunit 4I1 JBrowse link 8 120,668,225 120,674,209 RGD:2290270
G Cox4i2 cytochrome c oxidase subunit 4I2 JBrowse link 2 152,753,916 152,765,039 RGD:2290270
G Cox5a cytochrome c oxidase subunit 5A JBrowse link 9 57,517,328 57,532,427 RGD:2290270
G Cox5b cytochrome c oxidase subunit 5B JBrowse link 1 36,691,487 36,693,388 RGD:2290270
G Cox6a1 cytochrome c oxidase subunit 6A1 JBrowse link 5 115,345,652 115,348,958 RGD:2290270
G Cox6a2 cytochrome c oxidase subunit 6A2 JBrowse link 7 128,205,435 128,206,366 RGD:2290270
G Cox7c cytochrome c oxidase subunit 7C JBrowse link 13 86,044,798 86,046,795 RGD:2290270
G Cycs cytochrome c, somatic JBrowse link 6 50,562,563 50,566,569 RGD:2290270
G Cyct cytochrome c, testis JBrowse link 2 76,353,942 76,360,453 RGD:2290270
G mt-Co1 cytochrome c oxidase I, mitochondrial JBrowse link MT 5,328 6,872 RGD:2290270
G mt-Co3 cytochrome c oxidase III, mitochondrial JBrowse link MT 8,607 9,390 RGD:2290270
mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bdnf brain derived neurotrophic factor JBrowse link 2 109,674,700 109,727,043 RGD:2290270
G Coq9 coenzyme Q9 JBrowse link 8 94,838,413 94,854,895 RGD:2290270
G Dld dihydrolipoamide dehydrogenase JBrowse link 12 31,331,562 31,351,471 RGD:2290270
G mt-Nd2 NADH dehydrogenase 2, mitochondrial JBrowse link MT 3,914 4,951 RGD:2290270
G mt-Nd4 NADH dehydrogenase 4, mitochondrial JBrowse link MT 10,167 11,544 RGD:2290270
G Ndufa10 NADH:ubiquinone oxidoreductase subunit A10 JBrowse link 1 92,439,486 92,473,825 RGD:2290270
G Ndufa7 NADH:ubiquinone oxidoreductase subunit A7 JBrowse link 17 33,824,572 33,838,316 RGD:2290270
G Ndufa8 NADH:ubiquinone oxidoreductase subunit A8 JBrowse link 2 36,036,324 36,049,338 RGD:2290270
G Ndufaf1 NADH:ubiquinone oxidoreductase complex assembly factor 1 JBrowse link 2 119,655,446 119,662,839 RGD:2290270
G Ndufb6 NADH:ubiquinone oxidoreductase subunit B6 JBrowse link 4 40,270,591 40,279,421 RGD:2290270
G Ndufb8 NADH:ubiquinone oxidoreductase subunit B8 JBrowse link 19 44,548,571 44,555,442 RGD:2290270
G Ndufb9 NADH:ubiquinone oxidoreductase subunit B9 JBrowse link 15 58,933,801 58,939,516 RGD:2290270
G Ndufc2 NADH:ubiquinone oxidoreductase subunit C2 JBrowse link 7 97,400,003 97,407,800 RGD:2290270
G Ndufs2 NADH:ubiquinone oxidoreductase core subunit S2 JBrowse link 1 171,234,853 171,251,686 RGD:2290270
G Ndufs6 NADH:ubiquinone oxidoreductase core subunit S6 JBrowse link 13 73,319,876 73,328,482 RGD:2290270
G Ndufs8 NADH:ubiquinone oxidoreductase core subunit S8 JBrowse link 19 3,908,863 3,912,774 RGD:2290270
G Ndufv1 NADH:ubiquinone oxidoreductase core subunit V1 JBrowse link 19 4,007,499 4,012,755 RGD:2290270
G Ndufv2 NADH:ubiquinone oxidoreductase core subunit V2 JBrowse link 17 66,078,795 66,101,559 RGD:2290270
mitochondrial electron transport, succinate to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sdha succinate dehydrogenase complex, subunit A, flavoprotein (Fp) JBrowse link 13 74,322,255 74,350,240 RGD:2290270
G Sdhaf2 succinate dehydrogenase complex assembly factor 2 JBrowse link 19 10,500,512 10,525,209 RGD:2290270
G Sdhc succinate dehydrogenase complex, subunit C, integral membrane protein JBrowse link 1 171,129,157 171,150,640 RGD:2290270
G Sdhd succinate dehydrogenase complex, subunit D, integral membrane protein JBrowse link 9 50,596,340 50,603,849 RGD:2290270
mitochondrial electron transport, ubiquinol to cytochrome c term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyc1 cytochrome c-1 JBrowse link 15 76,343,513 76,346,260 RGD:2290270
G Cycs cytochrome c, somatic JBrowse link 6 50,562,563 50,566,569 RGD:2290270
G Cyct cytochrome c, testis JBrowse link 2 76,353,942 76,360,453 RGD:2290270
G mt-Cytb cytochrome b, mitochondrial JBrowse link MT 14,145 15,288 RGD:2290270
G Uqcc3 ubiquinol-cytochrome c reductase complex assembly factor 3 JBrowse link 19 8,880,014 8,880,933 RGD:2290270
G Uqcr10 ubiquinol-cytochrome c reductase, complex III subunit X JBrowse link 11 4,701,968 4,704,344 RGD:2290270
G Uqcrb ubiquinol-cytochrome c reductase binding protein JBrowse link 13 66,900,576 66,905,350 RGD:2290270
G Uqcrc1 ubiquinol-cytochrome c reductase core protein 1 JBrowse link 9 108,936,648 108,949,641 RGD:2290270
G Uqcrfs1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 JBrowse link 13 30,540,312 30,545,316 RGD:2290270
G Uqcrh ubiquinol-cytochrome c reductase hinge protein JBrowse link 4 116,066,965 116,075,070 RGD:2290270
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII JBrowse link 11 53,427,922 53,430,831 RGD:2290270
negative regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dnajc15 DnaJ heat shock protein family (Hsp40) member C15 JBrowse link 14 77,826,217 77,874,917 RGD:2290270
negative regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actn3 actinin alpha 3 JBrowse link 19 4,861,216 4,877,909 RGD:2290270
G Apoc3 apolipoprotein C-III JBrowse link 9 46,233,050 46,235,636 RGD:2290270
G Mlxipl MLX interacting protein-like JBrowse link 5 135,089,890 135,139,768 RGD:2290270
G Pde12 phosphodiesterase 12 JBrowse link 14 26,664,117 26,669,846 RGD:2290270
G Pde2a phosphodiesterase 2A, cGMP-stimulated JBrowse link 7 101,421,691 101,512,829 RGD:2290270
G Ppif peptidylprolyl isomerase F (cyclophilin F) JBrowse link 14 25,693,574 25,700,468 RGD:2290270
G Rhoa ras homolog family member A JBrowse link 9 108,306,160 108,337,943 RGD:2290270
G Tnf tumor necrosis factor JBrowse link 17 35,199,367 35,202,007 RGD:2290270
plasma membrane ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Coa6 cytochrome c oxidase assembly factor 6 JBrowse link 8 126,422,501 126,425,435 RGD:9068941
positive regulation of mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnb1 cyclin B1 JBrowse link 13 100,778,739 100,786,486 RGD:2290270
G Cdk1 cyclin-dependent kinase 1 JBrowse link 10 69,335,146 69,352,912 RGD:2290270
positive regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Iscu iron-sulfur cluster assembly enzyme JBrowse link 5 113,772,418 113,778,288 RGD:2290270
G Park7 Parkinson disease (autosomal recessive, early onset) 7 JBrowse link 4 150,897,133 150,909,921 RGD:2290270
G Pink1 PTEN induced putative kinase 1 JBrowse link 4 138,313,409 138,326,296 RGD:2290270
positive regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gadd45gip1 growth arrest and DNA-damage-inducible, gamma interacting protein 1 JBrowse link 8 84,832,282 84,835,482 RGD:2290270
G Lexm lymphocyte expansion molecule JBrowse link 4 106,590,908 106,617,397 RGD:2290270
G Myc myelocytomatosis oncogene JBrowse link 15 61,985,341 61,990,361 RGD:2290270
G Myog myogenin JBrowse link 1 134,290,004 134,292,548 RGD:2290270
G Nupr1 nuclear protein transcription regulator 1 JBrowse link 7 126,623,246 126,625,470 RGD:2290270
G Pgk1 phosphoglycerate kinase 1 JBrowse link X 106,187,100 106,203,699 RGD:2290270
G Pgk2 phosphoglycerate kinase 2 JBrowse link 17 40,207,018 40,208,609 RGD:2290270
G Vcp valosin containing protein JBrowse link 4 42,979,964 43,000,507 RGD:2290270
regulation of mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atpsckmt ATP synthase C subunit lysine N-methyltransferase JBrowse link 15 31,602,116 31,617,537 RGD:2290270
G Dnajc30 DnaJ heat shock protein family (Hsp40) member C30 JBrowse link 5 135,064,206 135,065,365 RGD:2290270
regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcd1 ATP-binding cassette, sub-family D (ALD), member 1 JBrowse link X 73,716,597 73,738,534 RGD:2290270
G Ak4 adenylate kinase 4 JBrowse link 4 101,416,478 101,467,771 RGD:2290270
G Atp7a ATPase, Cu++ transporting, alpha polypeptide JBrowse link X 106,027,224 106,128,161 RGD:2290270
G Cox7a1 cytochrome c oxidase subunit 7A1 JBrowse link 7 30,184,171 30,186,030 RGD:2290270
G Cox7a2 cytochrome c oxidase subunit 7A2 JBrowse link 9 79,755,241 79,771,422 RGD:2290270
G Cox7a2l cytochrome c oxidase subunit 7A2 like JBrowse link 17 83,501,917 83,514,333 RGD:2290270
G Myc myelocytomatosis oncogene JBrowse link 15 61,985,341 61,990,361 RGD:2290270
G Pink1 PTEN induced putative kinase 1 JBrowse link 4 138,313,409 138,326,296 RGD:2290270
G Shmt2 serine hydroxymethyltransferase 2 (mitochondrial) JBrowse link 10 127,517,123 127,522,444 RGD:2290270
G Slc25a23 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 JBrowse link 17 57,043,711 57,059,909 RGD:2290270
G Slc25a33 solute carrier family 25, member 33 JBrowse link 4 149,744,036 149,774,267 RGD:2290270
G Uqcc2 ubiquinol-cytochrome c reductase complex assembly factor 2 JBrowse link 17 27,122,665 27,133,891 RGD:2290270

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23159
    metabolic process 10977
      ATP metabolic process 258
        oxidative phosphorylation 112
          ATP synthesis coupled electron transport + 62
          mitochondrial ATP synthesis coupled proton transport + 19
          negative regulation of oxidative phosphorylation + 9
          positive regulation of oxidative phosphorylation + 13
          regulation of oxidative phosphorylation + 34
Path 2
Term Annotations click to browse term
  biological_process 23159
    metabolic process 10977
      cellular metabolic process 9769
        phosphorus metabolic process 3049
          phosphate-containing compound metabolic process 3028
            phosphorylation 2287
              oxidative phosphorylation 112
                ATP synthesis coupled electron transport + 62
                mitochondrial ATP synthesis coupled proton transport + 19
                negative regulation of oxidative phosphorylation + 9
                positive regulation of oxidative phosphorylation + 13
                regulation of oxidative phosphorylation + 34
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.