Bid (BH3 interacting domain death agonist) - Rat Genome Database

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Gene: Bid (BH3 interacting domain death agonist) Mus musculus
Analyze
Symbol: Bid
Name: BH3 interacting domain death agonist
RGD ID: 732539
MGI Page MGI
Description: Exhibits ubiquitin protein ligase binding activity. Involved in several processes, including apoptotic signaling pathway; positive regulation of cellular component organization; and regulation of apoptotic process. Localizes to cytosol and integral component of mitochondrial membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; hemolymphoid system gland; and liver and biliary system. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human BID (BH3 interacting domain death agonist); PARTICIPATES IN ceramide signaling pathway; FasL mediated signaling pathway; intrinsic apoptotic pathway; INTERACTS WITH (+)-dexrazoxane; 1,2-dimethylhydrazine; 1,3-Dinitropyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2700049M22Rik; AI875481; AU022477; BH3-interacting domain death agonist; p22 BID
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396120,870,080 - 120,894,074 (-)NCBIGRCm39mm39
GRCm39 Ensembl6120,868,891 - 120,893,814 (-)Ensembl
GRCm386120,893,119 - 120,917,062 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6120,891,930 - 120,916,853 (-)EnsemblGRCm38mm10GRCm38
MGSCv376120,843,137 - 120,866,838 (-)NCBIGRCm37mm9NCBIm37
MGSCv366120,858,738 - 120,882,439 (-)NCBImm8
Celera6122,736,915 - 122,760,652 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-dexrazoxane  (EXP)
(+)-Tetrandrine  (ISO)
(-)-anisomycin  (ISO)
(R)-mevalonic acid  (ISO)
(S)-amphetamine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dimethylhydrazine  (EXP)
1,3-Dinitropyrene  (EXP)
1,8-Dinitropyrene  (EXP)
1-nitropyrene  (EXP)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
1H-pyrazole  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-amino-2-deoxy-D-galactopyranose  (ISO)
2-deoxy-D-glucose  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-methyladenine  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (ISO)
4-nonylphenol  (EXP)
5-aza-2'-deoxycytidine  (EXP,ISO)
5-fluorouracil  (EXP,ISO)
6-formylpterin  (ISO)
6-O-methylguanine  (ISO)
6-oxocampestanol  (ISO)
6-propyl-2-thiouracil  (ISO)
7-ketocholesterol  (ISO)
acetochlor  (ISO)
acetylsalicylic acid  (ISO)
acrylamide  (ISO)
actinomycin D  (EXP,ISO)
aflatoxin B1  (EXP)
alantolactone  (ISO)
all-trans-retinoic acid  (ISO)
alpha-mangostin  (ISO)
alpinumisoflavone  (ISO)
alvocidib  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
andrographolide  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
antirheumatic drug  (ISO)
apigenin  (ISO)
aprepitant  (ISO)
arachidonic acid  (ISO)
aripiprazole  (ISO)
arjunolic acid  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (EXP,ISO)
atorvastatin calcium  (ISO)
atrazine  (ISO)
azadirachtin A  (ISO)
bafilomycin A1  (ISO)
BAPTA  (ISO)
benzo[a]pyrene  (EXP,ISO)
Benzo[a]pyrene-7,8-diol  (ISO)
Berbamine  (ISO)
bifenthrin  (EXP)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (ISO)
Bisphenol A diglycidyl ether  (ISO)
bortezomib  (ISO)
brassinolide  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
cadmium sulfide  (ISO)
caffeine  (ISO)
camptothecin  (ISO)
capsaicin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP,ISO)
casticin  (EXP,ISO)
celecoxib  (ISO)
chalcones  (ISO)
chrysazin  (ISO)
ciglitazone  (ISO)
cilostazol  (ISO)
Cinobufotalin  (ISO)
cisplatin  (EXP,ISO)
clavulone II  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cordycepin  (ISO)
coumarin  (ISO)
curcumin  (ISO)
cycloheximide  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
cyproconazole  (EXP)
cytarabine  (ISO)
D-penicillamine  (ISO)
daunorubicin  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
delphinidin  (ISO)
deoxynivalenol  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (EXP,ISO)
dibutyl phthalate  (EXP,ISO)
diclofenac  (ISO)
dieldrin  (ISO)
dioscin  (EXP,ISO)
dioxygen  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
Echinocystic acid  (ISO)
elemental selenium  (ISO)
ellipticine  (ISO)
emodin  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
esculetin  (ISO)
etoposide  (ISO)
eugenol  (EXP)
fenvalerate  (ISO)
fisetin  (ISO)
flavonols  (ISO)
flufenamic acid  (ISO)
flutamide  (ISO)
folic acid  (EXP)
furosemide  (ISO)
Fusarenone X  (EXP)
Garcinol  (ISO)
gemcitabine  (ISO)
genistein  (EXP,ISO)
gentamycin  (ISO)
gingerol  (ISO)
glyphosate  (ISO)
guggulsterone  (ISO)
hexachlorobenzene  (ISO)
hydrogen peroxide  (ISO)
idelalisib  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
isoflurane  (ISO)
juglone  (ISO)
ketoconazole  (EXP)
L-ascorbic acid  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (EXP,ISO)
lithocholic acid  (ISO)
lonidamine  (ISO)
LY294002  (ISO)
maneb  (ISO)
manganese(II) chloride  (ISO)
masoprocol  (ISO)
melatonin  (ISO)
methamphetamine  (ISO)
methoxychlor  (EXP)
methyl caffeate  (ISO)
methyl methanesulfonate  (ISO)
mifepristone  (ISO)
minocycline  (EXP,ISO)
Mitotane  (ISO)
MK-2206  (EXP)
mono(2-ethylhexyl) phthalate  (EXP)
monobenzyl phthalate  (EXP)
monoethyl phthalate  (EXP)
N-acetyl-L-cysteine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (EXP)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
Niflumic acid  (ISO)
nimesulide  (ISO)
nitric oxide  (ISO)
nitroprusside  (ISO)
Nonidet P-40  (ISO)
notoginsenoside R1  (EXP)
obeticholic acid  (ISO)
ochratoxin A  (ISO)
osthole  (ISO)
ozone  (ISO)
p-menthan-3-ol  (ISO)
paclitaxel  (ISO)
Panduratin A  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
parthenolide  (ISO)
patulin  (ISO)
PD 0325901  (EXP)
pemetrexed  (ISO)
pentachlorophenol  (EXP)
Pentoxifylline  (ISO)
pepstatin A  (ISO)
phenethyl isothiocyanate  (ISO)
phenylmercury acetate  (ISO)
phylloquinone  (ISO)
pirinixic acid  (EXP)
platycodin D  (ISO)
poly(I:C)  (ISO)
potassium iodide  (ISO)
progesterone  (ISO)
propiconazole  (EXP)
propylparaben  (ISO)
pterostilbene  (EXP)
quercetin  (ISO)
reactive oxygen species  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
rubimaillin  (ISO)
safrole  (ISO)
sanguinarine  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
Sesamol  (ISO)
silibinin  (ISO)
silicon dioxide  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
sirolimus  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
sorafenib  (ISO)
spiruchostatin B  (ISO)
staurosporine  (ISO)
sulforaphane  (EXP,ISO)
sulindac sulfide  (EXP,ISO)
T-2 toxin  (EXP)
tamoxifen  (ISO)
taurine  (ISO)
thapsigargin  (ISO)
thiazoles  (ISO)
thymoquinone  (ISO)
topotecan  (EXP,ISO)
triamcinolone acetonide  (ISO)
Tributyltin oxide  (EXP,ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
Triptolide  (EXP)
troglitazone  (EXP)
tunicamycin  (ISO)
urethane  (EXP)
valproic acid  (ISO)
vorinostat  (ISO)
zearalenone  (ISO)
zinc oxide  (EXP)
zinc pyrithione  (ISO)
zingerone  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
activation of cysteine-type endopeptidase activity involved in apoptotic process  (IBA,IMP)
apoptotic mitochondrial changes  (IBA,IDA)
apoptotic process  (IEA)
brain development  (ISO)
establishment of protein localization to membrane  (ISO)
extrinsic apoptotic signaling pathway  (IMP)
glial cell apoptotic process  (ISO)
hepatocyte apoptotic process  (IGI)
mitochondrial ATP synthesis coupled electron transport  (IMP)
mitochondrial outer membrane permeabilization  (IGI)
negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage  (IMP)
positive regulation of apoptotic process  (IDA,ISO)
positive regulation of apoptotic signaling pathway  (IDA)
positive regulation of autophagy in response to ER overload  (ISO)
positive regulation of extrinsic apoptotic signaling pathway  (IBA,ISO)
positive regulation of fibroblast apoptotic process  (IDA)
positive regulation of intrinsic apoptotic signaling pathway  (IBA,ISO)
positive regulation of mitochondrial membrane potential  (IMP)
positive regulation of protein-containing complex assembly  (IDA,ISO)
positive regulation of release of cytochrome c from mitochondria  (IBA,IGI,ISO)
protein targeting to mitochondrion  (IMP)
protein-containing complex assembly  (IDA)
regulation of apoptotic process  (IGI)
regulation of cell population proliferation  (IMP)
regulation of G1/S transition of mitotic cell cycle  (IMP)
regulation of mitochondrial membrane permeability involved in apoptotic process  (IGI)
release of cytochrome c from mitochondria  (IDA,IMP,ISO)
response to estradiol  (ISO)
response to ischemia  (ISO)
signal transduction in response to DNA damage  (TAS)

Cellular Component

Molecular Function

References

References - curated
1. Bhattacharjee M, etal., Int Immunol. 2008 Dec;20(12):1489-505. Epub 2008 Oct 17.
2. Collino M, etal., Thromb Haemost. 2009 Nov;102(5):837-45.
3. Duval N, etal., Front Cell Neurosci. 2018 Jan 30;12:15. doi: 10.3389/fncel.2018.00015. eCollection 2018.
4. Falschlehner C, etal., Int J Biochem Cell Biol. 2007;39(7-8):1462-75. Epub 2007 Feb 14.
5. Hylander BL, etal., J Transl Med. 2005 May 19;3(1):22.
6. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
7. Kim KW, etal., Spine (Phila Pa 1976). 2007 Oct 15;32(22):2443-8.
8. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
9. Lomonosova E and Chinnadurai G, Oncogene. 2008 Dec;27 Suppl 1:S2-19.
10. MGD data from the GO Consortium
11. MGD IEA
12. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
13. Pennarun B, etal., Biochim Biophys Acta. 2010 Apr;1805(2):123-40. Epub 2009 Dec 2.
14. Pipeline to import KEGG annotations from KEGG into RGD
15. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
16. Reed JC, etal., Genome Res 2003 Jun;13(6B):1376-88.
17. RGD automated import pipeline
18. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
19. RGD automated import pipeline for gene-chemical interactions
20. Scarabelli TM, etal., Circ Res. 2002 Apr 5;90(6):745-8.
21. Strasser A, etal., Immunity. 2009 Feb 20;30(2):180-92.
22. Xu B, etal., Biosci Rep. 2018 Jun 12;38(3). pii: BSR20171529. doi: 10.1042/BSR20171529. Print 2018 Jun 29.
23. Yin R, etal., Respir Physiol Neurobiol. 2016 Jan;220:81-7. doi: 10.1016/j.resp.2015.09.011. Epub 2015 Sep 30.
24. Zhang GX, etal., Am J Physiol Heart Circ Physiol. 2010 Feb;298(2):H433-9. Epub 2009 Nov 25.
Additional References at PubMed
PMID:8918887   PMID:9721221   PMID:9727492   PMID:9790773   PMID:9873064   PMID:9916985   PMID:10089878   PMID:10349636   PMID:10377054   PMID:10444588   PMID:10476969   PMID:10950869  
PMID:11042159   PMID:11076861   PMID:11369777   PMID:11381032   PMID:11412905   PMID:11714870   PMID:11742085   PMID:11805084   PMID:11840165   PMID:11867899   PMID:11980919   PMID:12011074  
PMID:12193163   PMID:12200426   PMID:12232800   PMID:12242151   PMID:12402042   PMID:12441076   PMID:12477932   PMID:12519725   PMID:12533511   PMID:12581736   PMID:12668632   PMID:12702491  
PMID:12754217   PMID:12808108   PMID:12904583   PMID:12934064   PMID:12949730   PMID:14610273   PMID:14687661   PMID:14729675   PMID:14963330   PMID:15075251   PMID:15117953   PMID:15148322  
PMID:15314281   PMID:15368445   PMID:15489334   PMID:15574417   PMID:15661737   PMID:15685547   PMID:15782199   PMID:15818416   PMID:15855651   PMID:15882876   PMID:15899861   PMID:15904428  
PMID:15972635   PMID:16012953   PMID:16106037   PMID:16122425   PMID:16122426   PMID:16141072   PMID:16141073   PMID:16172118   PMID:16207485   PMID:16227588   PMID:16380381   PMID:16395279  
PMID:16401474   PMID:16495337   PMID:16537427   PMID:16697956   PMID:16780816   PMID:16873683   PMID:16891420   PMID:16893972   PMID:17052454   PMID:17056520   PMID:17096024   PMID:17101783  
PMID:17209037   PMID:17283187   PMID:17289999   PMID:17307841   PMID:17308307   PMID:17448999   PMID:17464332   PMID:17509138   PMID:17585339   PMID:17634411   PMID:17641050   PMID:17686781  
PMID:17699753   PMID:17720882   PMID:17955375   PMID:17967808   PMID:18037375   PMID:18084238   PMID:18252892   PMID:18287039   PMID:18309324   PMID:18317451   PMID:18426910   PMID:18462686  
PMID:18464930   PMID:18535584   PMID:18614015   PMID:18667695   PMID:18691924   PMID:18713978   PMID:18723680   PMID:18799693   PMID:19060338   PMID:19062087   PMID:19079139   PMID:19088189  
PMID:19109183   PMID:19119023   PMID:19194987   PMID:19261612   PMID:19332555   PMID:19366803   PMID:19380821   PMID:19454696   PMID:19463967   PMID:19502415   PMID:19542438   PMID:19626005  
PMID:19644510   PMID:19654426   PMID:19661444   PMID:19711425   PMID:19796174   PMID:19839062   PMID:19917256   PMID:19959756   PMID:20008353   PMID:20028660   PMID:20077182   PMID:20088789  
PMID:20179769   PMID:20351066   PMID:20392206   PMID:20436477   PMID:20578150   PMID:20617182   PMID:20646170   PMID:20692344   PMID:20850011   PMID:20872776   PMID:21041309   PMID:21113148  
PMID:21127253   PMID:21146511   PMID:21264947   PMID:21267068   PMID:21339359   PMID:21367852   PMID:21382479   PMID:21478427   PMID:21490394   PMID:21533085   PMID:21552281   PMID:21642428  
PMID:21644000   PMID:21677750   PMID:21703985   PMID:21738214   PMID:21762490   PMID:21768356   PMID:21873635   PMID:22015606   PMID:22036586   PMID:22084408   PMID:22273278   PMID:22302823  
PMID:22343714   PMID:22365665   PMID:22446738   PMID:22460798   PMID:22522598   PMID:22632729   PMID:22914170   PMID:22964611   PMID:22996683   PMID:23142077   PMID:23470523   PMID:23744079  
PMID:23788643   PMID:23986435   PMID:24100034   PMID:24681344   PMID:24745156   PMID:24853737   PMID:24901048   PMID:24956542   PMID:24957380   PMID:25056906   PMID:25368155   PMID:25483735  
PMID:25551609   PMID:25565426   PMID:25714678   PMID:25909884   PMID:25951810   PMID:26219591   PMID:26344567   PMID:26417093   PMID:26611459   PMID:26997499   PMID:27001308   PMID:27055867  
PMID:27064265   PMID:27196317   PMID:27257617   PMID:27641306   PMID:27709293   PMID:27755971   PMID:28384611   PMID:28474670   PMID:28883393   PMID:29097366   PMID:29495595   PMID:29720226  
PMID:30281024   PMID:30635284   PMID:31064994   PMID:31558028   PMID:32325033  


Genomics

Comparative Map Data
Bid
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396120,870,080 - 120,894,074 (-)NCBIGRCm39mm39
GRCm39 Ensembl6120,868,891 - 120,893,814 (-)Ensembl
GRCm386120,893,119 - 120,917,062 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6120,891,930 - 120,916,853 (-)EnsemblGRCm38mm10GRCm38
MGSCv376120,843,137 - 120,866,838 (-)NCBIGRCm37mm9NCBIm37
MGSCv366120,858,738 - 120,882,439 (-)NCBImm8
Celera6122,736,915 - 122,760,652 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.02NCBI
BID
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2217,734,138 - 17,774,770 (-)EnsemblGRCh38hg38GRCh38
GRCh382217,734,138 - 17,774,665 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372218,216,904 - 18,257,431 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362216,596,906 - 16,637,258 (-)NCBINCBI36hg18NCBI36
Build 342216,591,459 - 16,631,812NCBI
Celera221,836,614 - 1,876,916 (-)NCBI
Cytogenetic Map22q11.21NCBI
HuRef222,030,888 - 2,070,940 (-)NCBIHuRef
CHM1_12218,216,448 - 18,257,021 (-)NCBICHM1_1
Bid
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24154,113,198 - 154,136,353 (-)NCBI
Rnor_6.0 Ensembl4153,442,218 - 153,465,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04153,439,812 - 153,465,247 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04220,531,866 - 220,554,360 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44157,296,383 - 157,318,481 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14157,541,223 - 157,563,322 (-)NCBI
Celera4142,956,454 - 142,978,221 (-)NCBICelera
Cytogenetic Map4q42NCBI
Bid
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554545,776,656 - 5,785,500 (-)NCBIChiLan1.0ChiLan1.0
BID
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12216,594,186 - 16,633,695 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2216,594,186 - 16,632,844 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0221,164,787 - 1,205,051 (-)NCBIMhudiblu_PPA_v0panPan3
BID
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12745,344,304 - 45,355,735 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2745,337,145 - 45,384,059 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha271,299,470 - 1,338,997 (+)NCBI
ROS_Cfam_1.02745,714,410 - 45,753,866 (-)NCBI
UMICH_Zoey_3.12745,642,533 - 45,681,976 (-)NCBI
UNSW_CanFamBas_1.02745,615,826 - 45,655,319 (-)NCBI
UU_Cfam_GSD_1.027652,469 - 692,311 (+)NCBI
Bid
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945110,195,950 - 110,237,745 (+)NCBI
SpeTri2.0NW_004936807708,340 - 750,127 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BID
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl569,849,002 - 69,875,853 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1569,849,007 - 69,874,647 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2572,118,716 - 72,143,292 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Bid
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247359,557,732 - 9,590,862 (+)NCBI

Position Markers
AU022477  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386120,892,471 - 120,892,559UniSTSGRCm38
MGSCv376120,842,489 - 120,842,577UniSTSGRCm37
Celera6122,736,267 - 122,736,355UniSTS
Cytogenetic Map6F1UniSTS
cM Map654.0UniSTS
cM Map654.0UniSTS
Whitehead/MRC_RH61226.46UniSTS
AI875481  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386120,893,390 - 120,893,500UniSTSGRCm38
MGSCv376120,843,408 - 120,843,518UniSTSGRCm37
Celera6122,737,186 - 122,737,296UniSTS
Cytogenetic Map6F1UniSTS
cM Map654.0UniSTS
Whitehead/MRC_RH61226.2UniSTS
Bid  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386120,894,183 - 120,895,693UniSTSGRCm38
MGSCv376120,844,201 - 120,845,711UniSTSGRCm37
Celera6122,737,979 - 122,739,489UniSTS
Cytogenetic Map6F1UniSTS
cM Map654.0UniSTS
Bid  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386120,893,156 - 120,893,928UniSTSGRCm38
MGSCv376120,843,174 - 120,843,946UniSTSGRCm37
Celera6122,736,952 - 122,737,724UniSTS
Cytogenetic Map6F1UniSTS
cM Map654.0UniSTS
AU022477  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386120,892,311 - 120,892,535UniSTSGRCm38
MGSCv376120,842,329 - 120,842,553UniSTSGRCm37
Celera6122,736,107 - 122,736,331UniSTS
Cytogenetic Map6F1UniSTS
Whitehead/MRC_RH61224.14UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696347325130347522Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696347325130347522Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698242853132242977Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698506837145935444Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698717516132717715Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698931748132940036Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699155128133155267Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103777444136423692Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104503360127042975Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104503360136423692Mouse
4141699Ibdq2_minflammatory bowel disease QTL 2 (mouse)Not determined106005405120917141Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110838217144838360Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111165485145165578Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112269957125356785Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112269957147052561Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114368732145656013Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115242853146429238Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115569842149572401Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115569842149572401Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115569842149572401Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115601042149601187Mouse
1301083Bhr5_mbronchial hyperresponsiveness 5 (mouse)Not determined6115717516132601187Mouse
4141064Ath37_matherosclerosis 37 (mouse)Not determined6116664897128519025Mouse
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116852888149736546Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117082986149736546Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120439808149736546Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1598
Count of miRNA genes:648
Interacting mature miRNAs:793
Transcripts:ENSMUST00000004560, ENSMUST00000125915, ENSMUST00000145948, ENSMUST00000160684, ENSMUST00000161594
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_007544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC006404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC006945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC083894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02165871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U75506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000004560   ⟹   ENSMUSP00000004560
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6120,892,854 - 120,916,853 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125915
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6120,906,998 - 120,916,803 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145948   ⟹   ENSMUSP00000117529
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6120,900,222 - 120,916,798 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160684   ⟹   ENSMUSP00000125731
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6120,891,930 - 120,916,836 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161594
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6120,895,618 - 120,897,568 (-)Ensembl
RefSeq Acc Id: NM_007544   ⟹   NP_031570
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396120,870,080 - 120,893,785 (-)NCBI
GRCm386120,893,119 - 120,916,824 (-)NCBI
MGSCv376120,843,137 - 120,866,838 (-)RGD
Celera6122,736,915 - 122,760,652 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505409   ⟹   XP_006505472
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396120,870,080 - 120,893,829 (-)NCBI
GRCm386120,893,119 - 120,916,866 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505410   ⟹   XP_006505473
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396120,870,080 - 120,893,853 (-)NCBI
GRCm386120,893,119 - 120,916,892 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505411   ⟹   XP_006505474
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396120,870,080 - 120,894,074 (-)NCBI
GRCm386120,893,119 - 120,917,062 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165767   ⟹   XP_036021660
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396120,870,080 - 120,884,341 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_031570   ⟸   NM_007544
- UniProtKB: P70444 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505474   ⟸   XM_006505411
- Peptide Label: isoform X1
- UniProtKB: P70444 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505472   ⟸   XM_006505409
- Peptide Label: isoform X1
- UniProtKB: P70444 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505473   ⟸   XM_006505410
- Peptide Label: isoform X1
- UniProtKB: P70444 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000117529   ⟸   ENSMUST00000145948
RefSeq Acc Id: ENSMUSP00000125731   ⟸   ENSMUST00000160684
RefSeq Acc Id: ENSMUSP00000004560   ⟸   ENSMUST00000004560
RefSeq Acc Id: XP_036021660   ⟸   XM_036165767
- Peptide Label: isoform X1

Promoters
RGD ID:6849195
Promoter ID:MM_XEF:6154
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour
Transcripts:NM_001030535,   NM_001075446
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366120,850,316 - 120,850,816 (-)MPROMDB
RGD ID:6838991
Promoter ID:MM_KWN:47431
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:OTTMUST00000059168,   OTTMUST00000059169,   OTTMUST00000059170
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366120,866,606 - 120,867,106 (-)MPROMDB
RGD ID:6890864
Promoter ID:EPDNEW_M8883
Type:initiation region
Name:Bid_1
Description:Mus musculus BH3 interacting domain death agonist , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386120,916,824 - 120,916,884EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:108093 AgrOrtholog
Ensembl Genes ENSMUSG00000004446 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000004560 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000117529 UniProtKB/TrEMBL
  ENSMUSP00000125731 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000004560 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000145948 UniProtKB/TrEMBL
  ENSMUST00000160684 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.437.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Bcl2_BH3_motif_CS UniProtKB/Swiss-Prot
  BID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Blc2-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12122 UniProtKB/Swiss-Prot
MGD MGI:108093 ENTREZGENE
NCBI Gene 12122 ENTREZGENE
PANTHER PTHR35447 UniProtKB/Swiss-Prot
Pfam BID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bid PhenoGen
PIRSF BID UniProtKB/Swiss-Prot
PROSITE BH3 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56854 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt BID_MOUSE UniProtKB/Swiss-Prot
  D3Z463_MOUSE UniProtKB/TrEMBL
  P70444 ENTREZGENE
UniProt Secondary Q99M39 UniProtKB/Swiss-Prot