Cycs (cytochrome c, somatic) - Rat Genome Database

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Gene: Cycs (cytochrome c, somatic) Mus musculus
Analyze
Symbol: Cycs
Name: cytochrome c, somatic
RGD ID: 10425
MGI Page MGI
Description: Enables heme binding activity. Acts upstream of or within several processes, including activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c; hydrogen peroxide metabolic process; and regulation of protein binding activity. Located in cytosol and mitochondrion. Is expressed in several structures, including central nervous system; jaw; limb; metanephros; and spiral ligament. Human ortholog(s) of this gene implicated in cholangiocarcinoma; lung non-small cell carcinoma; pancreatic cancer; and thrombocytopenia. Orthologous to human CYCS (cytochrome c, somatic); PARTICIPATES IN cardiolipin metabolic pathway; ceramide signaling pathway; electron transport chain pathway; INTERACTS WITH (+)-dexrazoxane; (-)-citrinin; (-)-selegiline.
Type: protein-coding
RefSeq Status: VALIDATED
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Cycs-ps1   Cycs-ps2   Cycs-ps3   Gm10053   Gm10108   Gm10121   Gm19880   Gm19932   Gm48758  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39650,539,543 - 50,543,549 (-)NCBIGRCm39mm39
GRCm39 Ensembl650,539,543 - 50,543,518 (-)Ensembl
GRCm38650,562,563 - 50,566,569 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl650,562,563 - 50,566,538 (-)EnsemblGRCm38mm10GRCm38
MGSCv37650,512,562 - 50,516,473 (-)NCBIGRCm37mm9NCBIm37
MGSCv36650,492,149 - 50,496,060 (-)NCBImm8
Celera651,079,647 - 51,083,558 (-)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map624.32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-dexrazoxane  (EXP)
(+)-taxifolin  (ISO)
(-)-citrinin  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(-)-selegiline  (EXP)
(R)-adrenaline  (ISO)
(R)-lipoic acid  (ISO)
(R)-noradrenaline  (ISO)
(S)-naringenin  (ISO)
(S)-nicotine  (ISO)
(Z)-3-butylidenephthalide  (ISO)
(Z)-ligustilide  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2-dimethylhydrazine  (EXP)
1,3-dichloropropan-2-ol  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-di-tert-butyl-4-methylphenol  (EXP)
2,6-dinitrotoluene  (ISO)
2-(4-iodo-2,5-dimethoxyphenyl)-1-methylethylamine  (ISO)
2-amino-2-deoxy-D-galactopyranose  (EXP)
2-amino-2-deoxy-D-glucopyranose  (ISO)
2-pyridylethylamine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3,3'-diindolylmethane  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
3-methyladenine  (ISO)
3-phenylprop-2-enal  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxynon-2-enal  (EXP,ISO)
4-phenylbutyric acid  (ISO)
4-tert-Octylphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
5-Hydroxycapric acid  (ISO)
5-methyl-4-oxido-2-pyrazin-4-iumcarboxylic acid  (ISO)
6-formylpterin  (ISO)
6-propyl-2-thiouracil  (ISO)
7H-xanthine  (ISO)
8-Br-cAMP  (ISO)
9-cis,11-trans-octadecadienoic acid  (ISO)
9H-xanthine  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
all-trans-retinol  (ISO)
alloxan  (ISO)
Allyl chloride  (ISO)
Aloe emodin  (ISO)
alpha-mangostin  (ISO)
alpinumisoflavone  (ISO)
alvocidib  (ISO)
amiloride  (ISO)
ammonium chloride  (ISO)
anastrozole  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (EXP,ISO)
antimycin A  (EXP)
apigenin  (ISO)
arachidonic acid  (ISO)
aristolochic acid  (ISO)
arjunolic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (EXP,ISO)
Aspidin  (ISO)
atorvastatin calcium  (ISO)
atrazine  (ISO)
azadirachtin A  (ISO)
azoxystrobin  (ISO)
baicalein  (EXP)
BAPTA  (EXP)
bathocuproine disulfonic acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
berberine  (ISO)
beta-D-glucosamine  (ISO)
bexarotene  (ISO)
bifenthrin  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bleomycin A2  (ISO)
bortezomib  (ISO)
bromobenzene  (ISO)
bufalin  (ISO)
buserelin  (ISO)
Butylparaben  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
cafestol  (ISO)
caffeine  (ISO)
cajanol  (ISO)
calcidiol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
camptothecin  (ISO)
carbamazepine  (ISO)
CARBENOXOLONE  (ISO)
carbon nanotube  (EXP)
carboplatin  (ISO)
carvedilol  (ISO)
casticin  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (EXP)
chrysazin  (ISO)
cisplatin  (EXP,ISO)
Clivoline  (ISO)
clobetasol  (EXP)
clofibrate  (EXP)
cobalt dichloride  (ISO)
cocaine  (EXP,ISO)
codeinone  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
coumarin  (ISO)
crocidolite asbestos  (EXP)
crocin-1  (ISO)
Cuprizon  (ISO)
curcumin  (ISO)
cycloheximide  (ISO)
cyclosporin A  (EXP,ISO)
cypermethrin  (ISO)
D-glucose  (ISO)
dapagliflozin  (ISO)
daunorubicin  (ISO)
DDE  (ISO)
deguelin  (ISO)
dehydroascorbic acid  (ISO)
delphinidin  (ISO)
deoxynivalenol  (EXP,ISO)
dexamethasone  (EXP,ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (EXP,ISO)
diazinon  (ISO)
diazoxide  (ISO)
dibutyl phthalate  (ISO)
dichlorvos  (ISO)
diclofenac  (ISO)
dicoumarol  (ISO)
dicrotophos  (ISO)
dieldrin  (ISO)
diethyldithiocarbamic acid  (ISO)
diethylstilbestrol  (ISO)
digitoxin  (ISO)
dioscin  (ISO)
dioxygen  (ISO)
dorsomorphin  (EXP,ISO)
doxorubicin  (EXP,ISO)
Echinocystic acid  (ISO)
edaravone  (ISO)
elemental selenium  (ISO)
enalapril  (ISO)
endrin  (EXP)
entinostat  (ISO)
equol  (ISO)
erdosteine  (EXP)
esculetin  (ISO)
ethanol  (EXP)
ethylbenzene  (ISO)
etoposide  (ISO)
eugenol  (EXP)
fenofibrate  (ISO)
fipronil  (ISO)
flavanone  (ISO)
flavonoids  (ISO)
folic acid  (EXP,ISO)
folpet  (EXP)
formaldehyde  (ISO)
fraxetin  (ISO)
fructose  (ISO)
fulvestrant  (ISO)
fumonisin B1  (ISO)
gallic acid  (ISO)
gamma-hexachlorocyclohexane  (ISO)
Garcinol  (ISO)
gefitinib  (ISO)
genistein  (ISO)
gentamycin  (ISO)
Gentiopicrin  (EXP)
ginsenoside Rd  (ISO)
glabridin  (EXP)
glucose  (ISO)
glutathione  (ISO)
glycochenodeoxycholic acid  (ISO)
glyphosate  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
Grifolin  (ISO)
heptachlor  (ISO)
hesperetin  (ISO)
hexadecanoic acid  (ISO)
hydrogen peroxide  (EXP,ISO)
hydroquinone  (ISO)
hyperforin  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
Ioversol  (ISO)
isatin  (ISO)
isoprenaline  (ISO)
ivermectin  (ISO)
kaempferol  (ISO)
kainic acid  (EXP,ISO)
ketoconazole  (ISO)
KN-93  (EXP)
L-ascorbic acid  (ISO)
L-dehydroascorbic acid  (ISO)
letrozole  (ISO)
leuprolide  (ISO)
limonene  (ISO)
linoleic acid  (ISO)
linsidomine  (EXP)
lipoic acid  (ISO)
lipopolysaccharide  (EXP,ISO)
Longikaurin A  (ISO)
losartan  (ISO)
LY294002  (ISO)
magnesium oxide  (ISO)
mancozeb  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (EXP,ISO)
methadone  (ISO)
methamphetamine  (ISO)
methotrexate  (ISO)
methoxychlor  (ISO)
methylisothiazolinone  (ISO)
metiram  (ISO)
miconazole  (ISO)
mifepristone  (ISO)
minocycline  (EXP,ISO)
mitomycin C  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
monocrotophos  (ISO)
morin  (ISO)
morphine  (ISO)
mycophenolic acid  (ISO)
myricetin  (ISO)
N-acetyl-L-cysteine  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (EXP)
N-nitrosodiethylamine  (ISO)
naphthalene  (EXP)
naringin  (ISO)
nelfinavir  (EXP)
neocuproine  (ISO)
nickel subsulfide  (ISO)
nickel sulfate  (ISO)
niclosamide  (ISO)
nicotine  (ISO)
nimodipine  (ISO)
nitric oxide  (ISO)
Norethindrone enanthate  (ISO)
nortriptyline  (EXP)
ochratoxin A  (ISO)
oleanolic acid  (ISO)
oleic acid  (ISO)
oxidopamine  (ISO)
p-tert-Amylphenol  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
PD 168393  (ISO)
Pentoxifylline  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perifosine  (ISO)
phenethyl caffeate  (ISO)
phenethyl isothiocyanate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
phosphoramide mustard  (ISO)
piperine  (ISO)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
potassium iodide  (ISO)
pravastatin  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
probucol  (ISO)
procyanidin B2  (ISO)
progesterone  (ISO)
propetamphos  (ISO)
propofol  (EXP)
protoporphyrin  (ISO)
pterostilbene  (ISO)
pyrogallol  (EXP,ISO)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (ISO)
quercetin 3-O-beta-D-galactopyranoside  (ISO)
resveratrol  (EXP,ISO)
rocaglamide  (ISO)
rotenone  (EXP,ISO)
S-adenosyl-L-methioninate  (EXP)
S-adenosyl-L-methionine  (EXP)
safrole  (ISO)
salubrinal  (ISO)
Salvianolic acid A  (ISO)
saxagliptin  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sevoflurane  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (EXP)
Soman  (ISO)
sorafenib  (ISO)
streptozocin  (ISO)
sulforaphane  (EXP)
sulfur dioxide  (ISO)
surfactin  (ISO)
surfactin C  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP,ISO)
taurine  (ISO)
tebufenpyrad  (ISO)
telmisartan  (ISO)
temozolomide  (ISO)
TEMPO  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
thalidomide  (ISO)
thapsigargin  (ISO)
thymoquinone  (ISO)
tigecycline  (ISO)
tipifarnib  (ISO)
titanium dioxide  (EXP,ISO)
torcetrapib  (ISO)
tributylstannane  (EXP)
Tributyltin oxide  (EXP,ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimethylenediamine  (ISO)
trimethyltin  (EXP)
troglitazone  (ISO)
tungsten  (EXP)
tunicamycin  (ISO)
ursolic acid  (ISO)
valinomycin  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
wortmannin  (ISO)
xestospongin C  (ISO)
xylitol  (ISO)
zearalenone  (EXP,ISO)
zinc pyrithione  (ISO)
ziram  (ISO)

References

References - curated
1. Bhattacharjee M, etal., Int Immunol. 2008 Dec;20(12):1489-505. Epub 2008 Oct 17.
2. Cao LQ, etal., Hepatol Res. 2009 Dec;39(12):1190-7. Epub 2009 Sep 25.
3. De Rocco D, etal., Biochim Biophys Acta. 2014 Feb;1842(2):269-74. doi: 10.1016/j.bbadis.2013.12.002. Epub 2013 Dec 8.
4. Javid J, etal., Tumour Biol. 2015 Jun;36(6):4253-60. doi: 10.1007/s13277-015-3062-6. Epub 2015 Jan 13.
5. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
6. Kiechle T, etal., Neuromolecular Med. 2002;1(3):183-95.
7. MGD and Homologene mouse data transfer
8. MGD data from the GO Consortium
9. MGD IEA
10. Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
11. Morison IM, etal., Nat Genet. 2008 Apr;40(4):387-9. doi: 10.1038/ng.103. Epub 2008 Mar 16.
12. Mouria M, etal., Int J Cancer. 2002 Apr 10;98(5):761-9.
13. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
14. OMIM Disease Annotation Pipeline
15. Pipeline to import KEGG annotations from KEGG into RGD
16. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
17. Pipeline to import SMPDB annotations from SMPDB into RGD
18. Ren M, etal., Prog Lipid Res. 2014 Jul;55:1-16. doi: 10.1016/j.plipres.2014.04.001. Epub 2014 Apr 24.
19. RGD automated import pipeline
20. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
21. RGD automated import pipeline for gene-chemical interactions
22. Savoia A, etal., Platelets. 2009 Feb;20(1):72-3. doi: 10.1080/09537100802485129.
23. Song Y, etal., Toxicology. 2008 Nov 20;253(1-3):53-61. Epub 2008 Sep 4.
24. Virbasius JV and Scarpulla RC, J Biol Chem 1988 May 15;263(14):6791-6.
Additional References at PubMed
PMID:191069   PMID:240690   PMID:1964409   PMID:2987801   PMID:3032216   PMID:7558022   PMID:7774957   PMID:7984407   PMID:8034327   PMID:8383125   PMID:9560217   PMID:10349636  
PMID:10830166   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11836241   PMID:11864976   PMID:11919514   PMID:11986672   PMID:12142566   PMID:12477932   PMID:14623868   PMID:14657025  
PMID:15271982   PMID:15489334   PMID:15907471   PMID:15933725   PMID:16054088   PMID:16103131   PMID:16141072   PMID:16141073   PMID:16469926   PMID:16757556   PMID:17210651   PMID:17276355  
PMID:17571083   PMID:17634366   PMID:18004876   PMID:18550520   PMID:18614015   PMID:18628400   PMID:18719582   PMID:18799693   PMID:19029908   PMID:19075019   PMID:19455142   PMID:19662359  
PMID:19875445   PMID:20671748   PMID:21267068   PMID:21340527   PMID:21352494   PMID:21712378   PMID:21873635   PMID:22157762   PMID:22343714   PMID:22351927   PMID:22357545   PMID:22442658  
PMID:22673621   PMID:23236519   PMID:23395375   PMID:23499423   PMID:24329121   PMID:24412630   PMID:24632563   PMID:24703692   PMID:25278024   PMID:25296312   PMID:25716737   PMID:26086723  
PMID:26178919   PMID:26403541   PMID:26963625   PMID:27106802   PMID:27166947   PMID:27758862   PMID:30004576   PMID:30191381   PMID:30550785   PMID:31001720   PMID:31601784   PMID:32325033  
PMID:33631669   PMID:33846639  


Genomics

Comparative Map Data
Cycs
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39650,539,543 - 50,543,549 (-)NCBIGRCm39mm39
GRCm39 Ensembl650,539,543 - 50,543,518 (-)Ensembl
GRCm38650,562,563 - 50,566,569 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl650,562,563 - 50,566,538 (-)EnsemblGRCm38mm10GRCm38
MGSCv37650,512,562 - 50,516,473 (-)NCBIGRCm37mm9NCBIm37
MGSCv36650,492,149 - 50,496,060 (-)NCBImm8
Celera651,079,647 - 51,083,558 (-)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map624.32NCBI
CYCS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl725,118,656 - 25,125,260 (-)EnsemblGRCh38hg38GRCh38
GRCh38725,118,656 - 25,125,260 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37725,158,275 - 25,164,879 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36725,124,800 - 25,131,480 (-)NCBINCBI36hg18NCBI36
Celera725,146,921 - 25,154,374 (-)NCBI
Cytogenetic Map7p15.3NCBI
HuRef725,044,828 - 25,051,539 (-)NCBIHuRef
CHM1_1725,160,181 - 25,166,894 (-)NCBICHM1_1
CRA_TCAGchr7v2725,209,510 - 25,216,457 (-)NCBI
Cycs
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2479,651,894 - 79,653,994 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl479,651,378 - 79,654,054 (-)Ensembl
Rnor_6.0480,331,226 - 80,333,326 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl480,331,227 - 80,333,326 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04145,002,156 - 145,004,256 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4478,825,878 - 78,827,978 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1479,102,008 - 79,104,108 (-)NCBI
Celera474,558,589 - 74,560,689 (-)NCBICelera
Cytogenetic Map4q24NCBI
LOC102023786
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541027,086,405 - 27,089,255 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541027,086,405 - 27,089,255 (-)NCBIChiLan1.0ChiLan1.0
LOC100986481
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1725,396,013 - 25,398,549 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl725,396,013 - 25,398,549 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0725,784,900 - 25,791,598 (-)NCBIMhudiblu_PPA_v0panPan3
CYCS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11438,579,446 - 38,581,983 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1438,579,446 - 38,581,983 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1438,129,129 - 38,131,665 (-)NCBI
ROS_Cfam_1.01438,516,027 - 38,518,562 (-)NCBI
UMICH_Zoey_3.11438,628,462 - 38,630,996 (-)NCBI
UNSW_CanFamBas_1.01438,321,370 - 38,323,910 (-)NCBI
UU_Cfam_GSD_1.01438,663,988 - 38,666,523 (-)NCBI
CYCS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1847,169,866 - 47,173,866 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11847,169,921 - 47,172,212 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21852,036,068 - 52,038,366 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103226354
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12133,251,825 - 33,253,298 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604271,404,460 - 71,406,988 (-)NCBIVero_WHO_p1.0
LOC101718508
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247395,411,192 - 5,413,995 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
X01756  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38650,565,355 - 50,565,458UniSTSGRCm38
MGSCv37650,515,354 - 50,515,457UniSTSGRCm37
Celera651,082,439 - 51,082,542UniSTS
Cytogenetic Map6B2.3UniSTS
Whitehead/MRC_RH6474.89UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61770000053500000Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61773466351734784Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1773466351734784Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61773466351734784Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61963941153639411Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61963941153639411Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61963941153639411Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268671322775Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62007289554072895Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62380000057800000Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2831405962314181Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3172656565726677Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63270000066700000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63389528167895420Mouse
11252142Mom12_mModifier of Min 12 (mouse)63389528167895420Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63629634770296450Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63647147170471591Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3676447870764478Mouse
14746995Manh60_mmandible shape 60 (mouse)63722567771225677Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64089129671379171Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
10043885Cia6c_mcollagen induced arthritis QTL 6c (mouse)Not determined64446587171119467Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1026
Count of miRNA genes:525
Interacting mature miRNAs:651
Transcripts:ENSMUST00000077766, ENSMUST00000161401
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000077766
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl650,542,217 - 50,542,929 (-)Ensembl
GRCm38.p6 Ensembl650,565,237 - 50,565,949 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161401   ⟹   ENSMUSP00000124523
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl650,539,543 - 50,543,518 (-)Ensembl
GRCm38.p6 Ensembl650,562,563 - 50,566,538 (-)Ensembl
RefSeq Acc Id: NM_007808   ⟹   NP_031834
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39650,539,543 - 50,543,549 (-)NCBI
GRCm38650,562,563 - 50,566,569 (-)NCBI
MGSCv37650,512,562 - 50,516,473 (-)RGD
Celera651,079,647 - 51,083,558 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_031834   ⟸   NM_007808
- UniProtKB: P62897 (UniProtKB/Swiss-Prot),   Q56A15 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000124523   ⟸   ENSMUST00000161401
Protein Domains
Cytochrome c

Promoters
RGD ID:6838760
Promoter ID:MM_KWN:45972
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000077766,   NR_015581,   NR_027892
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36650,515,736 - 50,517,467 (+)MPROMDB
RGD ID:6889688
Promoter ID:EPDNEW_M8295
Type:initiation region
Name:Cycs_1
Description:Mus musculus cytochrome c, somatic , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38650,566,474 - 50,566,534EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88578 AgrOrtholog
Ensembl Genes ENSMUSG00000058927 UniProtKB/Swiss-Prot
  ENSMUSG00000063694 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000072829 UniProtKB/Swiss-Prot
  ENSMUSP00000124523 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000073080 UniProtKB/Swiss-Prot
  ENSMUST00000161401 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.760.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cyt_c-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyt_c-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyt_c_1A/1B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13063 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88578 ENTREZGENE
NCBI Gene 13063 ENTREZGENE
PANTHER PTHR11961 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cytochrom_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cycs PhenoGen
PRINTS CYTCHRMECIAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CYTC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46626 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CYC_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q56A15 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary P00009 UniProtKB/Swiss-Prot
  Q8C2S2 UniProtKB/Swiss-Prot