Atp5pf (ATP synthase peripheral stalk subunit F6)

Gene: Atp5pf (ATP synthase peripheral stalk subunit F6) Mus musculus

Analyze

Symbol:

Atp5pf

Name:

ATP synthase peripheral stalk subunit F6

RGD ID:

731290

MGI Page

MGI

Description:

Predicted to enable proton transmembrane transporter activity. Predicted to contribute to ATP hydrolysis activity and proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in several processes, including negative regulation of icosanoid secretion; positive regulation of heart rate; and proton motive force-driven mitochondrial ATP synthesis. Predicted to act upstream of or within proton transmembrane transport. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and sensory organ. Orthologous to human ATP5PF (ATP synthase peripheral stalk subunit F6).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ATP synthase coupling factor VI; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F; ATP synthase-coupling factor 6, mitochondrial; Atp5j; ATPase subunit F6; CF6; coupling factor 6; mitochondrial ATP synthase coupling factor 6

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATP5PF (ATP synthase peripheral stalk subunit F6)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Atp5pf (ATP synthase peripheral stalk subunit F6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atp5pf (ATP synthase peripheral stalk subunit F6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATP5PF (ATP synthase peripheral stalk subunit F6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATP5PF (ATP synthase peripheral stalk subunit F6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atp5pf (ATP synthase peripheral stalk subunit F6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATP5PF (ATP synthase peripheral stalk subunit F6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATP5PF (ATP synthase peripheral stalk subunit F6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atp5pf (ATP synthase peripheral stalk subunit F6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Atp5pf (ATP synthase peripheral stalk subunit F6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ATP5PF (ATP synthase peripheral stalk subunit F6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-140m22.7	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Danio rerio (zebrafish):	si:dkey-22n8.3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	atp5pf	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Drosophila melanogaster (fruit fly):	ATPsynCF6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ATPsynCF6L	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	atp-4	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	atp5pf	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Related Pseudogenes:

LOC654426

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	84,624,754 - 84,632,495 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	84,624,754 - 84,632,513 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	84,827,871 - 84,835,857 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	84,827,866 - 84,835,625 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	84,828,116 - 84,835,819 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	84,710,463 - 84,718,166 (-)	NCBI		MGSCv36	mm8
Celera	16	85,033,263 - 85,040,971 (-)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	46.92	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

Alzheimer's Disease, Early-Onset, with Cerebral Amyloid Angiopathy (ISO)

essential hypertension (ISO)

Experimental Diabetes Mellitus (ISO)

genetic disease (ISO)

heart disease (ISO)

Left Ventricular Hypertrophy (ISO)

Liver Injury (ISO)

Neurodevelopmental Disorders (ISO)

pulmonary hypertension (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-dexrazoxane (EXP)

1,2-dimethylhydrazine (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (EXP)

4,4'-diaminodiphenylmethane (EXP)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (ISO)

aconitine (ISO)

amitrole (ISO)

ammonium chloride (ISO)

ampicillin (ISO)

atrazine (ISO)

beauvericin (ISO)

benzo[a]pyrene (EXP)

bisphenol A (EXP,ISO)

calcium dichloride (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (EXP)

cyclosporin A (ISO)

dibutyl phthalate (EXP)

diclofenac (ISO)

doxorubicin (EXP,ISO)

elemental selenium (ISO)

enniatin (ISO)

ethanol (EXP)

fenthion (EXP)

folic acid (EXP)

fulvestrant (ISO)

gentamycin (ISO)

hydralazine (ISO)

isobutanol (ISO)

isoniazide (EXP)

ivermectin (ISO)

lamivudine (EXP)

lipopolysaccharide (ISO)

methimazole (ISO)

metronidazole (ISO)

neomycin (ISO)

ochratoxin A (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (EXP)

pregnenolone 16alpha-carbonitrile (ISO)

reactive oxygen species (ISO)

rotenone (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sulfadimethoxine (ISO)

sunitinib (ISO)

tolcapone (ISO)

toluene (ISO)

trichloroethene (ISO)

triptonide (EXP)

troglitazone (ISO)

tungsten (EXP)

urethane (ISO)

valproic acid (ISO)

vancomycin (ISO)

zidovudine (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

monoatomic ion transport (IEA)

negative regulation of arachidonic acid secretion (ISO)

negative regulation of prostaglandin secretion (ISO)

positive regulation of blood pressure (ISO)

positive regulation of heart rate (ISO)

proton motive force-driven ATP synthesis (IEA)

proton motive force-driven mitochondrial ATP synthesis (ISO)

proton transmembrane transport (IEA)

response to muscle activity (ISO)

substantia nigra development (ISO)

Cellular Component

cell surface (ISO)

extracellular space (ISO)

membrane (IEA)

mitochondrial inner membrane (HDA)

mitochondrial proton-transporting ATP synthase complex (IBA,ISO)

mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) (ISO)

mitochondrion (HDA,ISO)

proton-transporting ATP synthase complex, coupling factor F(o) (IEA)

Molecular Function

ATP hydrolysis activity (ISO)

protein binding (ISO)

protein-containing complex binding (ISO)

proton transmembrane transporter activity (IEA)

proton-transporting ATP synthase activity, rotational mechanism (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Alzheimer's disease pathway (IEA)

forkhead class A signaling pathway (ISO)

Huntington's disease pathway (IEA)

oxidative phosphorylation pathway (IEA)

Parkinson's disease pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis.	Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2.	A gene expression map of human chromosome 21 orthologues in the mouse.	Gitton Y, etal., Nature 2002 Dec 5;420(6915):586-90.
3.	Mitochondrial coupling factor 6 upregulation in hypertension-induced cardiac hypertrophy.	He T, etal., Herz. 2015 Aug;40(5):783-7. doi: 10.1007/s00059-015-4301-8. Epub 2015 Apr 22.
4.	Coupling Factor 6 Is Upregulated in Monocrotaline-induced Pulmonary Arterial Hypertension in Rats.	Li N, etal., Am J Med Sci. 2016 Dec;352(6):631-636. doi: 10.1016/j.amjms.2016.08.002. Epub 2016 Aug 15.
5.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
6.	MGDs mouse GO annotations	MGD data from the GO Consortium
7.	Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria.	Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
8.	Circulating coupling factor 6 in human hypertension: role of reactive oxygen species.	Osanai T, etal., J Hypertens. 2003 Dec;21(12):2323-8. doi: 10.1097/01.hjh.0000098161.70956.08.
9.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
10.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
11.	Application of a discovery to targeted LC-MS proteomics approach to identify deregulated proteins associated with idiosyncratic liver toxicity in a rat model of LPS/diclofenac co-administration.	Ramm S, etal., Toxicology. 2015 May 4;331:100-11. doi: 10.1016/j.tox.2015.03.004. Epub 2015 Mar 13.
12.	Human chromosome 21 gene expression atlas in the mouse.	Reymond A, etal., Nature 2002 Dec 5;420(6915):582-6.
13.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
15.	Lung-specific RNA interference of coupling factor 6, a novel peptide, attenuates pulmonary arterial hypertension in rats.	Yin J, etal., Respir Res. 2016 Aug 4;17(1):99. doi: 10.1186/s12931-016-0409-5.
16.	Marine collagen peptides reduce endothelial cell injury in diabetic rats by inhibiting apoptosis and the expression of coupling factor 6 and microparticles.	Zhu C, etal., Mol Med Rep. 2017 Oct;16(4):3947-3957. doi: 10.3892/mmr.2017.7061. Epub 2017 Jul 21.

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11167019	PMID:11217851	PMID:12466851	PMID:12477932	PMID:12520002	PMID:12865426	PMID:12904583
PMID:14610273	PMID:14681479	PMID:15199140	PMID:15489334	PMID:16141072	PMID:16141073	PMID:16309857	PMID:16916647	PMID:17967808	PMID:18614015	PMID:18799693	PMID:20811295
PMID:21267068	PMID:21873635	PMID:22038518	PMID:22258022	PMID:22306848	PMID:29676259	PMID:30409884	PMID:32325033

Genomics

Comparative Map Data

Atp5pf
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	84,624,754 - 84,632,495 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	84,624,754 - 84,632,513 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	84,827,871 - 84,835,857 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	84,827,866 - 84,835,625 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	84,828,116 - 84,835,819 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	84,710,463 - 84,718,166 (-)	NCBI		MGSCv36	mm8
Celera	16	85,033,263 - 85,040,971 (-)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	46.92	NCBI

ATP5PF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	25,724,500 - 25,735,653 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	25,716,503 - 25,735,673 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	27,096,811 - 27,107,964 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	26,018,662 - 26,029,836 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	21	26,018,662 - 26,029,836	NCBI
Celera	21	12,280,206 - 12,291,380 (-)	NCBI		Celera
Cytogenetic Map	21	q21.3	NCBI
HuRef	21	12,499,927 - 12,511,003 (-)	NCBI		HuRef
CHM1_1	21	26,657,444 - 26,668,586 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	24,082,042 - 24,093,216 (-)	NCBI		T2T-CHM13v2.0

Atp5pf
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	37,368,045 - 37,375,721 (-)	NCBI		GRCr8
mRatBN7.2	11	23,881,594 - 23,889,581 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	23,881,592 - 23,889,119 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	32,587,838 - 32,594,892 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	25,288,245 - 25,295,299 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	24,476,951 - 24,484,006 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	24,286,806 - 24,294,419 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	24,286,787 - 24,294,179 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	27,914,805 - 27,918,237 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	24,316,748 - 24,323,800 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	24,316,747 - 24,323,800 (-)	NCBI
Celera	11	23,720,789 - 23,727,843 (-)	NCBI		Celera
Cytogenetic Map	11	q11	NCBI

Atp5pf
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	25,601,083 - 25,609,888 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	25,601,253 - 25,609,933 (-)	NCBI	ChiLan1.0	ChiLan1.0

ATP5PF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	21,919,475 - 21,930,738 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	16,776,655 - 16,787,928 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	12,169,567 - 12,180,717 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	25,526,252 - 25,537,363 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	25,519,441 - 25,537,363 (-)	Ensembl	panpan1.1		panPan2

ATP5PF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	21,207,080 - 21,212,220 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	21,200,337 - 21,215,975 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	31	21,261,085 - 21,269,970 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	21,254,346 - 21,269,778 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	21,278,973 - 21,288,056 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	21,280,200 - 21,289,273 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	21,755,620 - 21,764,710 (-)	NCBI		UU_Cfam_GSD_1.0

Atp5pf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	21,756,733 - 21,764,531 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936640	1,916,711 - 1,924,823 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATP5PF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	189,278,945 - 189,290,229 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	189,281,429 - 189,290,234 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	199,153,513 - 199,157,380 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATP5PF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	66,539,014 - 66,550,186 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	66,538,864 - 66,550,046 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	87,004,210 - 87,016,075 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atp5pf
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	13,779,610 - 13,787,610 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624745	13,779,610 - 13,787,525 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Atp5pf
292 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	767
Count of miRNA genes:	426
Interacting mature miRNAs:	472
Transcripts:	ENSMUST00000023608, ENSMUST00000114191, ENSMUST00000114193, ENSMUST00000127651, ENSMUST00000138279, ENSMUST00000140036, ENSMUST00000144799, ENSMUST00000146103, ENSMUST00000146225, ENSMUST00000148787, ENSMUST00000150502, ENSMUST00000155956
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
26884376	Skwq4_m	skull length QTL 4, 5 week (mouse)					16	8417864	90896888	Mouse
1357517	Bwtn1_m	body weight at necropsy 1 (mouse)			Not determined		16	20019329	85600826	Mouse
1302096	Aod1a_m	autoimmune ovarian dysgenesis 1a (mouse)			Not determined		16	35446643	92573008	Mouse
26884416	Bzwq5_m	bi-zygomatic width QTL 5, 5 week (mouse)					16	37320362	84696888	Mouse
1301394	Eae11_m	susceptibility to experimental allergic encephalomyelitis 11 (mouse)			Not determined		16	53561891	87562035	Mouse
1301364	Lith14_m	lithogenic gene 14 (mouse)			Not determined		16	55661846	89661961	Mouse
1301125	Sluc27_m	susceptibility to lung cancer 27 (mouse)			Not determined		16	61608644	95608764	Mouse
4141113	Tgq28_m	triglyceride QTL 28 (mouse)			Not determined			62986646	96986646	Mouse
1300928	Etia_m	ethanol induced activation (mouse)			Not determined		16	63313907	97314016	Mouse
1558740	Bpq9_m	blood pressure QTL 9 (mouse)			Not determined		16	63327336	97327472	Mouse
1302194	Pgia10_m	proteoglycan induced arthritis 10 (mouse)			Not determined		16	68600722	98008968	Mouse
1301032	Tauph_m	tau phosphorylation (mouse)			Not determined		16	69076132	98008968	Mouse
11049573	Lmr18b_m	leishmaniasis resistance 18b (mouse)					16	69127611	98008968	Mouse
11049574	Lmr18a_m	leishmaniasis resistance 18a (mouse)					16	69127611	98008968	Mouse
4142262	Lmr18_m	leishmaniasis resistance 18 (mouse)			Not determined		16	69127611	98008968	Mouse
11522753	Cocia19_m	cocaine-induced activity, QTL 19 (mouse)					16	69254482	98008968	Mouse
1301598	Renf2_m	renal failure 2 (mouse)			Not determined		16	70380252	98008968	Mouse

Markers in Region

RH67867

Mouse Assembly	Chr	Position (strand)	Source
Celera	17	39,079,775 - 39,079,900	UniSTS
Celera	14	51,822,719 - 51,822,844	UniSTS
Cytogenetic Map	16	C3.3	UniSTS
Cytogenetic Map	14	C2	UniSTS
Cytogenetic Map	14	C1	UniSTS
Cytogenetic Map	17	B1	UniSTS

RH46901

Mouse Assembly	Chr	Position (strand)	Source
Celera	17	39,079,723 - 39,079,901	UniSTS
Celera	14	51,822,667 - 51,822,845	UniSTS
Cytogenetic Map	14	C2	UniSTS
Cytogenetic Map	17	B1	UniSTS
Cytogenetic Map	16	C3.3	UniSTS
Cytogenetic Map	14	C1	UniSTS

Atp5j

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
MGSCv37	9	21,897,155 - 21,897,349	UniSTS	GRCm37
MGSCv37	3	88,920,838 - 88,921,032	UniSTS	GRCm37
Celera	17	39,079,727 - 39,080,010	UniSTS
Celera	9	19,361,644 - 19,361,838	UniSTS
Celera	3	89,155,586 - 89,155,780	UniSTS
Celera	14	51,822,671 - 51,822,954	UniSTS
Cytogenetic Map	3	F1	UniSTS
Cytogenetic Map	9	A3	UniSTS
Cytogenetic Map	5	G2	UniSTS
Cytogenetic Map	16	C3.3	UniSTS
cM Map	16		UniSTS
cM Map	9	4.0	UniSTS

PMC200946P1

Mouse Assembly	Chr	Position (strand)	Source
Celera	17	39,079,722 - 39,079,958	UniSTS
Celera	14	51,822,666 - 51,822,902	UniSTS
Cytogenetic Map	16	C3.3	UniSTS
Cytogenetic Map	14	C2	UniSTS
Cytogenetic Map	14	C1	UniSTS
Cytogenetic Map	17	B1	UniSTS

Atp5j

Mouse Assembly	Chr	Position (strand)	Source
Celera	17	39,079,727 - 39,080,010	UniSTS
Celera	14	51,822,671 - 51,822,954	UniSTS
Cytogenetic Map	16	C3.3	UniSTS
Cytogenetic Map	17	B1	UniSTS
Cytogenetic Map	14	C1	UniSTS
Cytogenetic Map	14	C2	UniSTS

Atp5j

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	16	C3.3	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001302213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001302214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001302215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001302216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001358499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001358500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001416589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001416591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001416592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001416593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001416594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001416595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001416597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001416598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001416600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001416601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_016755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_184383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_184384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030248938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036159753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036159754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036159755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA259963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC164162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AH012474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI326720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK078484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC010766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE851144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE995304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY079469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U77128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	W75852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000023608 ⟹ ENSMUSP00000023608

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	84,624,759 - 84,632,513 (-)	Ensembl
GRCm38.p6 Ensembl	16	84,827,871 - 84,835,625 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000114191 ⟹ ENSMUSP00000109829

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	84,624,759 - 84,632,391 (-)	Ensembl
GRCm38.p6 Ensembl	16	84,827,871 - 84,835,503 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000114193 ⟹ ENSMUSP00000109831

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	84,624,754 - 84,631,127 (-)	Ensembl
GRCm38.p6 Ensembl	16	84,827,866 - 84,834,239 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000127651

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	84,627,959 - 84,632,186 (-)	Ensembl
GRCm38.p6 Ensembl	16	84,831,071 - 84,835,298 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000138279 ⟹ ENSMUSP00000122527

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	84,625,327 - 84,632,490 (-)	Ensembl
GRCm38.p6 Ensembl	16	84,828,439 - 84,835,602 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000140036

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	84,628,217 - 84,632,043 (-)	Ensembl
GRCm38.p6 Ensembl	16	84,831,329 - 84,835,155 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000144799

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	84,624,759 - 84,625,701 (-)	Ensembl
GRCm38.p6 Ensembl	16	84,827,871 - 84,828,813 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000146103

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	84,624,762 - 84,628,495 (-)	Ensembl
GRCm38.p6 Ensembl	16	84,827,874 - 84,831,607 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000146225

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	84,626,436 - 84,630,764 (-)	Ensembl
GRCm38.p6 Ensembl	16	84,829,548 - 84,833,876 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000148787

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	84,631,164 - 84,632,417 (-)	Ensembl
GRCm38.p6 Ensembl	16	84,834,276 - 84,835,529 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000150502

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	84,630,411 - 84,631,720 (-)	Ensembl
GRCm38.p6 Ensembl	16	84,833,523 - 84,834,832 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000155956

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	84,628,257 - 84,631,893 (-)	Ensembl
GRCm38.p6 Ensembl	16	84,831,369 - 84,835,005 (-)	Ensembl

RefSeq Acc Id:

NM_001302213 ⟹ NP_001289142

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,632,495 (-)	NCBI
GRCm38	16	84,827,871 - 84,835,625 (-)	NCBI
Celera	16	85,033,263 - 85,041,022 (-)	NCBI

Sequence:

show sequence

GCGGCCGCGGGGGGGGACAAGCCCCGGAACCAGGCCGCCCGCGCGGGCCCGCGCTCCCCGCCAG
CCCGCGTCCGCAACTCACCAGCTCCGGAATTCGTCCCGTGGCCCTAGCCCGCGCTTCCACAGCC
GGCTGGGAACGGCGGCGGCGCGGGCTCCAGGTACAGCGCCTCTCCGGGCGAGCCGCGCCGCTCC
CGCGAGTAGCAGGAGGCGTCCGGTCGCAGACTCCCTTCGAGGCGCTTCCTGTCCGGTGAGCGTC
GAACGACTGAAGCCGCGGCCCATAGTGCCTTGCGATGGCGGGTAGGCGTGTGTAGGCGGAGCCA
GGGCCGGAAGTAGAACGGTGGCGGCGGCGGTGACTCTGGCAGCTCGGGACTCAGTGCAAGAAGA
AATGACCGTCTTGGCAGTTAGATTGGGAGCAGGTTGACTGTGGAATGTTAGTACAGAGACTCAG
CCATGGTTCTGCAGAGGATCTTCAGGCTCTCCTCTGTCCTTCGGTCAGCAGTCTCTGTGCATTT
GAAGAGGAACATTGGTGTTACAGCTGTGGCCTTTAATAAGGAACTTGATCCTGTACAGAAACTC
TTCGTGGACAAGATAAGAGAGTACAAATCAAAGCGACAGGCATCTGGAGGACCTGTTGATATTG
GCCCAGAGTATCAGCAAGATCTGGACAGAGAGCTTTATAAGCTTAAACAAATGTATGGTAAAGG
AGAGATGGATACATTTCCTACCTTCAAATTTGATGATCCCAAATTTGAAGTCATCGACAAACCC
CAGTCCTGAGGAACATACAAAATCCATGTGGTAATTTGTCATGAATTAGTTGTACAACTAATCA
AAAAATTCAAATAAACATTCATTTCACAGTTAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001302214 ⟹ NP_001289143

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,631,895 (-)	NCBI
GRCm38	16	84,827,871 - 84,835,022 (-)	NCBI
Celera	16	85,033,263 - 85,041,022 (-)	NCBI

Sequence:

show sequence

CTCCACTTCCTCCTCCTGTTTGGCTTCTGTCTCACCTAGAGGCGTCCGGTCGCAGACTCCCTTC
GAGGCGCTTCCTGTCCGGTGAGCGTCGAACGACTGAAGCCGCGGCCCATAGTGCCTTGCGATGG
CGGGTAGGCGTGTGTAGGCGGAGCCAGGGCCGGAAGTAGAACGGTGGCGGCGGCGGTGACTCTG
GCAGCTCGGGACTCAGTGCAAGTACAGAGACTCAGCCATGGTTCTGCAGAGGATCTTCAGGCTC
TCCTCTGTCCTTCGGTCAGCAGTCTCTGTGCATTTGAAGAGGAACATTGGTGTTACAGCTGTGG
CCTTTAATAAGGAACTTGATCCTGTACAGAAACTCTTCGTGGACAAGATAAGAGAGTACAAATC
AAAGCGACAGGCATCTGGAGGACCTGTTGATATTGGCCCAGAGTATCAGCAAGATCTGGACAGA
GAGCTTTATAAGCTTAAACAAATGTATGGTAAAGGAGAGATGGATACATTTCCTACCTTCAAAT
TTGATGATCCCAAATTTGAAGTCATCGACAAACCCCAGTCCTGAGGAACATACAAAATCCATGT
GGTAATTTGTCATGAATTAGTTGTACAACTAATCAAAAAATTCAAATAAACATTCATTTCACAG
TTAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001302215 ⟹ NP_001289144

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,631,895 (-)	NCBI
GRCm38	16	84,827,871 - 84,835,001 (-)	NCBI
Celera	16	85,033,263 - 85,041,022 (-)	NCBI

Sequence:

show sequence

GGCTTCTGTCTCACCTAGAGGCGTCCGGTCGCAGACTCCCTTCGAGGCGCTTCCTGTCCGTACA
GAGACTCAGCCATGGTTCTGCAGAGGATCTTCAGGCTCTCCTCTGTCCTTCGGTCAGCAGTCTC
TGTGCATTTGAAGAGGAACATTGGTGTTACAGCTGTGGCCTTTAATAAGGAACTTGATCCTGTA
CAGAAACTCTTCGTGGACAAGATAAGAGAGTACAAATCAAAGCGACAGGCATCTGGAGGACCTG
TTGATATTGGCCCAGAGTATCAGCAAGATCTGGACAGAGAGCTTTATAAGCTTAAACAAATGTA
TGGTAAAGGAGAGATGGATACATTTCCTACCTTCAAATTTGATGATCCCAAATTTGAAGTCATC
GACAAACCCCAGTCCTGAGGAACATACAAAATCCATGTGGTAATTTGTCATGAATTAGTTGTAC
AACTAATCAAAAAATTCAAATAAACATTCATTTCACAGTTAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001302216 ⟹ NP_001289145

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,631,895 (-)	NCBI
GRCm38	16	84,827,871 - 84,834,998 (-)	NCBI
Celera	16	85,033,263 - 85,041,022 (-)	NCBI

Sequence:

show sequence

TTCTGTCTCACCTAGAGGCGTCCGGTCGCAGACTCCCTTCGAGGCGCTTCCTGTCCGGTGAGCG
TCGAACGACTGAAGCCGCGGCCCATAGTGCCTTGCGATGGCGGTACAGAGACTCAGCCATGGTT
CTGCAGAGGATCTTCAGGCTCTCCTCTGTCCTTCGGTCAGCAGTCTCTGTGCATTTGAAGAGGA
ACATTGGTGTTACAGCTGTGGCCTTTAATAAGGAACTTGATCCTGTACAGAAACTCTTCGTGGA
CAAGATAAGAGAGTACAAATCAAAGCGACAGGCATCTGGAGGACCTGTTGATATTGGCCCAGAG
TATCAGCAAGATCTGGACAGAGAGCTTTATAAGCTTAAACAAATGTATGGTAAAGGAGAGATGG
ATACATTTCCTACCTTCAAATTTGATGATCCCAAATTTGAAGTCATCGACAAACCCCAGTCCTG
AGGAACATACAAAATCCATGTGGTAATTTGTCATGAATTAGTTGTACAACTAATCAAAAAATTC
AAATAAACATTCATTTCACAGTTAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001358499 ⟹ NP_001345428

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,631,895 (-)	NCBI
GRCm38	16	84,827,871 - 84,834,976 (-)	NCBI

Sequence:

show sequence

CGGTCGCAGACTCCCTTCGAGGCGCTTCCTGTCCGGTGAGCGTCGAACGACTGAAGCCGCGGCC
CATAGTGCCTTGCGATGGCGGGTAGGCGTGTGTAGGCGGAGCCAGGGCCGGAAGTAGAACGGTG
GCGGCGGCGGTGACTCTGGCAGCTCGGGACTCAGTGCAAGAGACTCAGCCATGGTTCTGCAGAG
GATCTTCAGGCTCTCCTCTGTCCTTCGGTCAGCAGTCTCTGTGCATTTGAAGAGGAACATTGGT
GTTACAGCTGTGGCCTTTAATAAGGAACTTGATCCTGTACAGAAACTCTTCGTGGACAAGATAA
GAGAGTACAAATCAAAGCGACAGGCATCTGGAGGACCTGTTGATATTGGCCCAGAGTATCAGCA
AGATCTGGACAGAGAGCTTTATAAGCTTAAACAAATGTATGGTAAAGGAGAGATGGATACATTT
CCTACCTTCAAATTTGATGATCCCAAATTTGAAGTCATCGACAAACCCCAGTCCTGAGGAACAT
ACAAAATCCATGTGGTAATTTGTCATGAATTAGTTGTACAACTAATCAAAAAATTCAAATAAAC
ATTCATTTCACAGTTA

hide sequence

RefSeq Acc Id:

NM_001358500 ⟹ NP_001345429

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,631,895 (-)	NCBI
GRCm38	16	84,827,871 - 84,834,976 (-)	NCBI

Sequence:

show sequence

CGGTCGCAGACTCCCTTCGAGGCGCTTCCTGTCCGGTGAGCGTCGAACGACTGAAGCCGCGGCC
CATAGTGCCTTGCGATGGCGGGTAGGCGTGTGTAGGCGGAGCCAGGGCCGGAAGTAGAACGGTG
GCGGCGGCGGTGACTCTGGCAGCTCGGGACTCAGTGCAAGAAGAAATGACCGTCTTGGCAGTTA
GATTGGGAGCAGGTTGACTGTGGAATGTTAGAGACTCAGCCATGGTTCTGCAGAGGATCTTCAG
GCTCTCCTCTGTCCTTCGGTCAGCAGTCTCTGTGCATTTGAAGAGGAACATTGGTGTTACAGCT
GTGGCCTTTAATAAGGAACTTGATCCTGTACAGAAACTCTTCGTGGACAAGATAAGAGAGTACA
AATCAAAGCGACAGGCATCTGGAGGACCTGTTGATATTGGCCCAGAGTATCAGCAAGATCTGGA
CAGAGAGCTTTATAAGCTTAAACAAATGTATGGTAAAGGAGAGATGGATACATTTCCTACCTTC
AAATTTGATGATCCCAAATTTGAAGTCATCGACAAACCCCAGTCCTGAGGAACATACAAAATCC
ATGTGGTAATTTGTCATGAATTAGTTGTACAACTAATCAAAAAATTCAAATAAACATTCATTTC
ACAGTTA

hide sequence

RefSeq Acc Id:

NM_001416589 ⟹ NP_001403518

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,631,745 (-)	NCBI

RefSeq Acc Id:

NM_001416591 ⟹ NP_001403520

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,632,495 (-)	NCBI

RefSeq Acc Id:

NM_001416592 ⟹ NP_001403521

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,632,495 (-)	NCBI

RefSeq Acc Id:

NM_001416593 ⟹ NP_001403522

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,632,495 (-)	NCBI

RefSeq Acc Id:

NM_001416594 ⟹ NP_001403523

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,632,495 (-)	NCBI

RefSeq Acc Id:

NM_001416595 ⟹ NP_001403524

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,632,495 (-)	NCBI

RefSeq Acc Id:

NM_001416597 ⟹ NP_001403526

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,632,495 (-)	NCBI

RefSeq Acc Id:

NM_001416598 ⟹ NP_001403527

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,631,745 (-)	NCBI

RefSeq Acc Id:

NM_001416600 ⟹ NP_001403529

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,632,495 (-)	NCBI

RefSeq Acc Id:

NM_001416601 ⟹ NP_001403530

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,632,495 (-)	NCBI

RefSeq Acc Id:

NM_016755 ⟹ NP_058035

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,632,495 (-)	NCBI
GRCm38	16	84,827,871 - 84,835,625 (-)	NCBI
MGSCv37	16	84,828,116 - 84,835,819 (-)	RGD
Celera	16	85,033,263 - 85,041,022 (-)	NCBI
cM Map	16		ENTREZGENE

Sequence:

show sequence

GCGGCCGCGGGGGGGGACAAGCCCCGGAACCAGGCCGCCCGCGCGGGCCCGCGCTCCCCGCCAG
CCCGCGTCCGCAACTCACCAGCTCCGGAATTCGTCCCGTGGCCCTAGCCCGCGCTTCCACAGCC
GGCTGGGAACGGCGGCGGCGCGGGCTCCAGGTACAGCGCCTCTCCGGGCGAGCCGCGCCGCTCC
CGCGAGTAGCAGGAGGCGTCCGGTCGCAGACTCCCTTCGAGGCGCTTCCTGTCCGGTGAGCGTC
GAACGACTGAAGCCGCGGCCCATAGTGCCTTGCGATGGCGGGTAGGCGTGTGTAGGCGGAGCCA
GGGCCGGAAGTAGAACGGTGGCGGCGGCGGTGACTCTGGCAGCTCGGGACTCAGTGCAAGTACA
GAGACTCAGCCATGGTTCTGCAGAGGATCTTCAGGCTCTCCTCTGTCCTTCGGTCAGCAGTCTC
TGTGCATTTGAAGAGGAACATTGGTGTTACAGCTGTGGCCTTTAATAAGGAACTTGATCCTGTA
CAGAAACTCTTCGTGGACAAGATAAGAGAGTACAAATCAAAGCGACAGGCATCTGGAGGACCTG
TTGATATTGGCCCAGAGTATCAGCAAGATCTGGACAGAGAGCTTTATAAGCTTAAACAAATGTA
TGGTAAAGGAGAGATGGATACATTTCCTACCTTCAAATTTGATGATCCCAAATTTGAAGTCATC
GACAAACCCCAGTCCTGAGGAACATACAAAATCCATGTGGTAATTTGTCATGAATTAGTTGTAC
AACTAATCAAAAAATTCAAATAAACATTCATTTCACAGTTAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_184383

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,632,495 (-)	NCBI

RefSeq Acc Id:

NR_184384

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,754 - 84,632,495 (-)	NCBI

RefSeq Acc Id:

XM_030248938 ⟹ XP_030104798

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,759 - 84,632,346 (-)	NCBI
GRCm38	16	84,827,871 - 84,834,978 (-)	NCBI

Sequence:

show sequence

CTCTCCGGGCGAGCCGCGCCGCTCCCGCGAGTAGCAGGAGGCGTCCGGTCGCAGACTCCCTTCG
AGGCGCTTCCTGTCCGAAGAAATGACCGTCTTGGCAGTTAGATTGGGAGCAGGTTGACTGTGGA
ATGTTAGTACAGAGACTCAGCCATGGTTCTGCAGAGGATCTTCAGGCTCTCCTCTGTCCTTCGG
TCAGCAGTCTCTGTGCATTTGAAGAGGAACATTGGTGTTACAGCTGTGGCCTTTAATAAGGAAC
TTGATCCTGTACAGAAACTCTTCGTGGACAAGATAAGAGAGTACAAATCAAAGCGACAGGCATC
TGGAGGACCTGTTGATATTGGCCCAGAGTATCAGCAAGATCTGGACAGAGAGCTTTATAAGCTT
AAACAAATGTATGGTAAAGGAGAGATGGATACATTTCCTACCTTCAAATTTGATGATCCCAAAT
TTGAAGTCATCGACAAACCCCAGTCCTGAGGAACATACAAAATCCATGTGGTAATTTGTCATGA
ATTAGTTGTACAACTAATCAAAAAATTCAAATAAACATTCATTTCACAGTTA

hide sequence

RefSeq Acc Id:

XM_036159753 ⟹ XP_036015646

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,759 - 84,631,660 (-)	NCBI

Sequence:

show sequence

GGGACTGAGCTTCTGGGTTTCTTCACGAGGAGAGAGGGCTGCCCGTCACCTTTGCCCTGGGAGT
AGAGCGCAGCCCCGTGTCCTTGGCACCGTCCTGGCCTGGCCTGGGGTCACAGGTGACCTCGGCC
CTGCTGGGTATTCAGATTTGCCTTACGCTCACTAAATAAGACCGTGAATGCTCTCCTGGGAGCA
GAGCGGGCCGACTCGAAAAGCAGAAAAGACGGGGTGGTGAGCCTGCAGCCCGCCTGGGGCAGCC
CAAGGTCACGGCGCGCCACAGGCTTGTGAATAATGCAGGCGGCGATCGAGCCTCCTAAGACAGG
AAAGGGCGATGGTGATATCCTAAAAGTTTTATATCCAATCTAGAAGTCATGCTTTGTCGATTGA
CTTTATGATTAGATACTCACGAGCAGCAAAGGGACTAGCCTTCGGCTAGGCTGGTCAGTCAACC
GCTATAAATAGGAGAGCCGTGCGCCTTCCCAAAGCTACACCTCTGGGTTTGAACTTTGATTACC
CCACCCCCACCCCCACCATGCTTTCCCCAATATTGTTACTATCAGACCTCTAACAAGCAGCAAG
CTAGTGCAGGATATTAATTCAGTACGGAATTTGTCCCAAATGGTGTTCTACACTTAGGATGCCA
TTTGTCTTCCGTGTGATCATGAACAGATCGCATTCTCTATTTAATCTGAAAAAGTGAAAGGCAG
TGAAGGAGAAACAACAAGTAGTTTTGGTAAGAGAGAATGTGGTCACTGTTAGAACGATTGAGTA
GGACTTAGGAGAAGAAATGACCGTCTTGGCAGTTAGATTGGGAGCAGGTTGACTGTGGAATGTT
AGTACAGAGACTCAGCCATGGTTCTGCAGAGGATCTTCAGGCTCTCCTCTGTCCTTCGGTCAGC
AGTCTCTGTGCATTTGAAGAGGAACATTGGTGTTACAGCTGTGGCCTTTAATAAGGAACTTGAT
CCTGTACAGAAACTCTTCGTGGACAAGATAAGAGAGTACAAATCAAAGCGACAGGCATCTGGAG
GACCTGTTGATATTGGCCCAGAGTATCAGCAAGATCTGGACAGAGAGCTTTATAAGCTTAAACA
AATGTATGGTAAAGGAGAGATGGATACATTTCCTACCTTCAAATTTGATGATCCCAAATTTGAA
GTCATCGACAAACCCCAGTCCTGAGGAACATACAAAATCCATGTGGTAATTTGTCATGAATTAG
TTGTACAACTAATCAAAAAATTCAAATAAACATTCATTTCACAGTTA

hide sequence

RefSeq Acc Id:

XM_036159754 ⟹ XP_036015647

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,759 - 84,632,346 (-)	NCBI

Sequence:

show sequence

CTCTCCGGGCGAGCCGCGCCGCTCCCGCGAGTAGCAGGAGGCGTCCGGTCGCAGACTCCCTTCG
AGGCGCTTCCTGTCCGAAGAAATGACCGTCTTGGCAGTTAGATTGGGAGCAGGTTGACTGTGGA
ATGTTAGAGACTCAGCCATGGTTCTGCAGAGGATCTTCAGGCTCTCCTCTGTCCTTCGGTCAGC
AGTCTCTGTGCATTTGAAGAGGAACATTGGTGTTACAGCTGTGGCCTTTAATAAGGAACTTGAT
CCTGTACAGAAACTCTTCGTGGACAAGATAAGAGAGTACAAATCAAAGCGACAGGCATCTGGAG
GACCTGTTGATATTGGCCCAGAGTATCAGCAAGATCTGGACAGAGAGCTTTATAAGCTTAAACA
AATGTATGGTAAAGGAGAGATGGATACATTTCCTACCTTCAAATTTGATGATCCCAAATTTGAA
GTCATCGACAAACCCCAGTCCTGAGGAACATACAAAATCCATGTGGTAATTTGTCATGAATTAG
TTGTACAACTAATCAAAAAATTCAAATAAACATTCATTTCACAGTTA

hide sequence

RefSeq Acc Id:

XM_036159755 ⟹ XP_036015648

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,624,759 - 84,631,704 (-)	NCBI

Sequence:

show sequence

AGTGCAAGGTGACTGGGAGGGTAACTGGGCTAGCTCGGCCTCCTGGGACTGAGCTTCTGGGTTT
CTTCACGAGGAGAGAGGGCTGCCCGTCACCTTTGCCCTGGGAGTAGAGCGCAGCCCCGTGTCCT
TGGCACCGTCCTGGCCTGGCCTGGGGTCACAGGTGACCTCGGCCCTGCTGGAAGAAATGACCGT
CTTGGCAGTTAGATTGGGAGCAGGTTGACTGTGGAATGTTAGAGACTCAGCCATGGTTCTGCAG
AGGATCTTCAGGCTCTCCTCTGTCCTTCGGTCAGCAGTCTCTGTGCATTTGAAGAGGAACATTG
GTGTTACAGCTGTGGCCTTTAATAAGGAACTTGATCCTGTACAGAAACTCTTCGTGGACAAGAT
AAGAGAGTACAAATCAAAGCGACAGGCATCTGGAGGACCTGTTGATATTGGCCCAGAGTATCAG
CAAGATCTGGACAGAGAGCTTTATAAGCTTAAACAAATGTATGGTAAAGGAGAGATGGATACAT
TTCCTACCTTCAAATTTGATGATCCCAAATTTGAAGTCATCGACAAACCCCAGTCCTGAGGAAC
ATACAAAATCCATGTGGTAATTTGTCATGAATTAGTTGTACAACTAATCAAAAAATTCAAATAA
ACATTCATTTCACAGTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001289142	(Get FASTA)	NCBI Sequence Viewer
	NP_001289143	(Get FASTA)	NCBI Sequence Viewer
	NP_001289144	(Get FASTA)	NCBI Sequence Viewer
	NP_001289145	(Get FASTA)	NCBI Sequence Viewer
	NP_001345428	(Get FASTA)	NCBI Sequence Viewer
	NP_001345429	(Get FASTA)	NCBI Sequence Viewer
	NP_001403518	(Get FASTA)	NCBI Sequence Viewer
	NP_001403520	(Get FASTA)	NCBI Sequence Viewer
	NP_001403521	(Get FASTA)	NCBI Sequence Viewer
	NP_001403522	(Get FASTA)	NCBI Sequence Viewer
	NP_001403523	(Get FASTA)	NCBI Sequence Viewer
	NP_001403524	(Get FASTA)	NCBI Sequence Viewer
	NP_001403526	(Get FASTA)	NCBI Sequence Viewer
	NP_001403527	(Get FASTA)	NCBI Sequence Viewer
	NP_001403529	(Get FASTA)	NCBI Sequence Viewer
	NP_001403530	(Get FASTA)	NCBI Sequence Viewer
	NP_058035	(Get FASTA)	NCBI Sequence Viewer
	XP_030104798	(Get FASTA)	NCBI Sequence Viewer
	XP_036015646	(Get FASTA)	NCBI Sequence Viewer
	XP_036015647	(Get FASTA)	NCBI Sequence Viewer
	XP_036015648	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB19213	(Get FASTA)	NCBI Sequence Viewer
	AAH10766	(Get FASTA)	NCBI Sequence Viewer
	AAO27831	(Get FASTA)	NCBI Sequence Viewer
	BAC37301	(Get FASTA)	NCBI Sequence Viewer
	EDK98314	(Get FASTA)	NCBI Sequence Viewer
	EDK98315	(Get FASTA)	NCBI Sequence Viewer
	EDK98316	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000023608
	ENSMUSP00000023608.8
	ENSMUSP00000109829
	ENSMUSP00000109829.2
	ENSMUSP00000109831
	ENSMUSP00000109831.2
	ENSMUSP00000122527.2
GenBank Protein	P97450	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_058035 ⟸ NM_016755
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVLQRIFRLSSVLRSAVSVHLKRNIGVTAVAFNKELDPVQKLFVDKIREYKSKRQASGGPVDIG PEYQQDLDRELYKLKQMYGKGEMDTFPTFKFDDPKFEVIDKPQS hide sequence

RefSeq Acc Id:	NP_001289142 ⟸ NM_001302213
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVLQRIFRLSSVLRSAVSVHLKRNIGVTAVAFNKELDPVQKLFVDKIREYKSKRQASGGPVDIG PEYQQDLDRELYKLKQMYGKGEMDTFPTFKFDDPKFEVIDKPQS hide sequence

RefSeq Acc Id:	NP_001289143 ⟸ NM_001302214
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVLQRIFRLSSVLRSAVSVHLKRNIGVTAVAFNKELDPVQKLFVDKIREYKSKRQASGGPVDIG PEYQQDLDRELYKLKQMYGKGEMDTFPTFKFDDPKFEVIDKPQS hide sequence

RefSeq Acc Id:	NP_001289144 ⟸ NM_001302215
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVLQRIFRLSSVLRSAVSVHLKRNIGVTAVAFNKELDPVQKLFVDKIREYKSKRQASGGPVDIG PEYQQDLDRELYKLKQMYGKGEMDTFPTFKFDDPKFEVIDKPQS hide sequence

RefSeq Acc Id:	NP_001289145 ⟸ NM_001302216
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVLQRIFRLSSVLRSAVSVHLKRNIGVTAVAFNKELDPVQKLFVDKIREYKSKRQASGGPVDIG PEYQQDLDRELYKLKQMYGKGEMDTFPTFKFDDPKFEVIDKPQS hide sequence

RefSeq Acc Id:	XP_030104798 ⟸ XM_030248938
- Peptide Label:	isoform X1
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001345428 ⟸ NM_001358499
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001345429 ⟸ NM_001358500
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSMUSP00000122527 ⟸ ENSMUST00000138279

RefSeq Acc Id:

ENSMUSP00000109831 ⟸ ENSMUST00000114193

RefSeq Acc Id:

ENSMUSP00000109829 ⟸ ENSMUST00000114191

RefSeq Acc Id:

ENSMUSP00000023608 ⟸ ENSMUST00000023608

RefSeq Acc Id:	XP_036015647 ⟸ XM_036159754
- Peptide Label:	isoform X1
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_036015648 ⟸ XM_036159755
- Peptide Label:	isoform X1
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_036015646 ⟸ XM_036159753
- Peptide Label:	isoform X1
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001403522 ⟸ NM_001416593
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001403524 ⟸ NM_001416595
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001403526 ⟸ NM_001416597
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001403523 ⟸ NM_001416594
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001403529 ⟸ NM_001416600
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001403521 ⟸ NM_001416592
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001403520 ⟸ NM_001416591
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001403530 ⟸ NM_001416601
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001403518 ⟸ NM_001416589
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001403527 ⟸ NM_001416598
- Peptide Label:	precursor
- UniProtKB:	P97450 (UniProtKB/Swiss-Prot), E9QAD6 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P97450-F1-model_v2	AlphaFold	P97450	1-108	view protein structure

Promoters

RGD ID:

6826824

Promoter ID:

MM_KWN:21515

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_4Hour, Brain, Kidney, Liver

Transcripts:

OTTMUST00000061969

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	16	84,828,626 - 84,829,997 (-)	MPROMDB

RGD ID:

6826827

Promoter ID:

MM_KWN:21516

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Kidney, Lung, MEF_B6

Transcripts:

OTTMUST00000062351

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	16	84,831,471 - 84,831,971 (-)	MPROMDB

RGD ID:

6826825

Promoter ID:

MM_KWN:21517

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, MEF_B6

Transcripts:

ENSMUST00000114193, OTTMUST00000061881

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	16	84,834,136 - 84,835,047 (-)	MPROMDB

RGD ID:

13674284

Promoter ID:

EPDNEW_M21290

Type:

initiation region

Name:

Atp5j_1

Description:

Mus musculus ATP synthase, H+ transporting, mitochondrial F0complex, subunit F , transcript variant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M21293

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	16	84,834,857 - 84,834,917	EPDNEW

RGD ID:

6826826

Promoter ID:

MM_KWN:21518

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000114191, OTTMUST00000061876, OTTMUST00000061878, OTTMUST00000061879, OTTMUST00000061880, OTTMUST00000062159, OTTMUST00000062161, OTTMUST00000062162, UC007ZTH.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	16	84,835,066 - 84,836,527 (-)	MPROMDB

RGD ID:

13674288

Promoter ID:

EPDNEW_M21293

Type:

initiation region

Name:

Atp5j_2

Description:

Mus musculus ATP synthase, H+ transporting, mitochondrial F0complex, subunit F , transcript variant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M21290

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	16	84,835,600 - 84,835,660	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:107777	AgrOrtholog
Ensembl Genes	ENSMUSG00000022890	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000023608	ENTREZGENE
	ENSMUST00000023608.14	UniProtKB/Swiss-Prot
	ENSMUST00000114191	ENTREZGENE
	ENSMUST00000114191.8	UniProtKB/Swiss-Prot
	ENSMUST00000114193	ENTREZGENE
	ENSMUST00000114193.8	UniProtKB/Swiss-Prot
	ENSMUST00000138279.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.246.110	UniProtKB/Swiss-Prot
	6.10.280.200	UniProtKB/TrEMBL
InterPro	ATP_synth_f6_mt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ATP_synth_f6_sf_mt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:11957	UniProtKB/Swiss-Prot
MGD	MGI:107777	ENTREZGENE
NCBI Gene	11957	ENTREZGENE
PANTHER	ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR12441	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	ATP-synt_F6	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Atp5pf	PhenoGen
PIRSF	ATP_synthase_coupling_factor_6	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF111357	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	ATP5J_MOUSE	UniProtKB/Swiss-Prot
	E9QAD6	ENTREZGENE, UniProtKB/TrEMBL
	P97450	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-05-15	Atp5pf	ATP synthase peripheral stalk subunit F6	Atp5j	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	Symbol and/or name updated	27372883	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)