Uqcr10 (ubiquinol-cytochrome c reductase, complex III subunit X) - Rat Genome Database

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Gene: Uqcr10 (ubiquinol-cytochrome c reductase, complex III subunit X) Mus musculus
Analyze
Symbol: Uqcr10
Name: ubiquinol-cytochrome c reductase, complex III subunit X
RGD ID: 1615129
MGI Page MGI
Description: Predicted to be involved in mitochondrial electron transport, ubiquinol to cytochrome c. Located in mitochondrion. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and respiratory system. Orthologous to human UQCR10 (ubiquinol-cytochrome c reductase, complex III subunit X).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110020P15Rik; AA960494; complex III subunit 9; complex III subunit X; cytochrome b-c1 complex subunit 9; cytochrome c1 non-heme 7 kDa protein; RP23-280J3.4; ubiquinol-cytochrome c reductase complex (7.2 kD); ubiquinol-cytochrome c reductase complex 7.2 kDa protein; ubiquinol-cytochrome c reductase complex protein; Ucrc
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,651,968 - 4,654,344 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,651,973 - 4,654,342 (-)EnsemblGRCm39 Ensembl
GRCm38114,701,968 - 4,704,344 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,701,973 - 4,704,342 (-)EnsemblGRCm38mm10GRCm38
MGSCv37114,601,971 - 4,604,347 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,601,976 - 4,604,331 (-)NCBIMGSCv36mm8
Celera115,200,861 - 5,203,237 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12865426   PMID:12904583   PMID:14610273   PMID:14651853   PMID:14681479   PMID:15489334  
PMID:15741512   PMID:16120479   PMID:16141072   PMID:16141073   PMID:17062627   PMID:17967808   PMID:18614015   PMID:18614564   PMID:18799693   PMID:21267068   PMID:21873635   PMID:22794259  
PMID:24457600   PMID:26697723   PMID:26876175   PMID:28844695   PMID:29518331   PMID:30457570   PMID:30550785   PMID:32325033  


Genomics

Comparative Map Data
Uqcr10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,651,968 - 4,654,344 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,651,973 - 4,654,342 (-)EnsemblGRCm39 Ensembl
GRCm38114,701,968 - 4,704,344 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,701,973 - 4,704,342 (-)EnsemblGRCm38mm10GRCm38
MGSCv37114,601,971 - 4,604,347 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,601,976 - 4,604,331 (-)NCBIMGSCv36mm8
Celera115,200,861 - 5,203,237 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.96NCBI
UQCR10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,767,369 - 29,770,413 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,767,369 - 29,770,413 (+)EnsemblGRCh38hg38GRCh38
GRCh372230,163,358 - 30,166,402 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362228,493,358 - 28,496,402 (+)NCBINCBI36Build 36hg18NCBI36
Celera2213,963,088 - 13,966,132 (+)NCBICelera
Cytogenetic Map22q12.2ENTREZGENE
HuRef2213,126,973 - 13,130,017 (+)NCBIHuRef
CHM1_12230,122,543 - 30,125,587 (+)NCBICHM1_1
T2T-CHM13v2.02230,230,748 - 30,233,792 (+)NCBIT2T-CHM13v2.0
Uqcr10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,789,657 - 83,791,914 (-)NCBIGRCr8
mRatBN7.21479,566,151 - 79,569,017 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1479,566,157 - 79,569,003 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1483,996,709 - 83,998,967 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01485,236,781 - 85,239,039 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01481,686,458 - 81,688,716 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01484,935,480 - 84,937,741 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,935,486 - 84,937,725 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01485,614,330 - 85,614,509 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41485,353,763 - 85,353,942 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1478,471,580 - 78,473,837 (-)NCBICelera
Cytogenetic Map14q21NCBI
LOC102011733
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554554,013,134 - 4,018,570 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554554,013,197 - 4,015,448 (+)NCBIChiLan1.0ChiLan1.0
LOC100968432
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22339,739,065 - 39,741,623 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12242,440,058 - 42,442,945 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02210,810,858 - 10,813,466 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12228,615,583 - 28,618,426 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2228,615,583 - 28,618,426 (+)Ensemblpanpan1.1panPan2
UQCR10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12622,953,336 - 22,955,569 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2622,953,331 - 22,955,569 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2622,824,297 - 22,826,530 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02623,326,845 - 23,329,078 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12623,037,052 - 23,039,286 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02623,299,598 - 23,301,831 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02623,359,368 - 23,361,602 (+)NCBIUU_Cfam_GSD_1.0
LOC101968471
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118112,181,977 - 112,184,687 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366573,685,962 - 3,690,273 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366573,686,019 - 3,688,730 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UQCR10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1446,783,325 - 46,786,140 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11446,783,340 - 46,786,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21449,817,593 - 49,820,393 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UQCR10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11912,644,211 - 12,647,094 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1912,644,235 - 12,647,096 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045113,502,096 - 113,505,226 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101708617
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247476,080,740 - 6,082,926 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247476,080,725 - 6,083,065 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Uqcr10
76 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:307
Count of miRNA genes:182
Interacting mature miRNAs:191
Transcripts:ENSMUST00000058407, ENSMUST00000130236, ENSMUST00000151559
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse

Markers in Region
AA960494  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38114,702,079 - 4,702,182UniSTSGRCm38
MGSCv37114,602,082 - 4,602,185UniSTSGRCm37
Celera115,200,972 - 5,201,075UniSTS
Cytogenetic Map11A1UniSTS
Whitehead/MRC_RH1118.44UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001362879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_197979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_156411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC007550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL606521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU258939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW985484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX522336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB599515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000058407   ⟹   ENSMUSP00000054856
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,651,973 - 4,654,342 (-)Ensembl
GRCm38.p6 Ensembl114,701,973 - 4,704,342 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130236
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,651,982 - 4,654,053 (-)Ensembl
GRCm38.p6 Ensembl114,701,982 - 4,704,053 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151559
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,651,975 - 4,654,334 (-)Ensembl
GRCm38.p6 Ensembl114,701,975 - 4,704,334 (-)Ensembl
RefSeq Acc Id: NM_001362879   ⟹   NP_001349808
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,651,968 - 4,654,344 (-)NCBI
GRCm38114,701,968 - 4,704,344 (-)NCBI
Sequence:
RefSeq Acc Id: NM_197979   ⟹   NP_932096
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,651,968 - 4,654,344 (-)NCBI
GRCm38114,701,968 - 4,704,344 (-)NCBI
MGSCv37114,601,971 - 4,604,347 (-)RGD
Celera115,200,861 - 5,203,237 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_156411
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,651,968 - 4,654,344 (-)NCBI
GRCm38114,701,968 - 4,704,344 (-)NCBI
Sequence:
RefSeq Acc Id: NP_932096   ⟸   NM_197979
- Peptide Label: isoform 1
- UniProtKB: Q8R1I1 (UniProtKB/Swiss-Prot),   Q5NCJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001349808   ⟸   NM_001362879
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000054856   ⟸   ENSMUST00000058407

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R1I1-F1-model_v2 AlphaFold Q8R1I1 1-64 view protein structure

Promoters
RGD ID:6821866
Promoter ID:MM_KWN:6245
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000109928,   NM_197979,   OTTMUST00000011290,   OTTMUST00000011291,   OTTMUST00000011292,   OTTMUST00000011294,   UC007HVC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36114,603,716 - 4,604,767 (-)MPROMDB
RGD ID:8673804
Promoter ID:EPDNEW_M14933
Type:initiation region
Name:Uqcr10_1
Description:Mus musculus ubiquinol-cytochrome c reductase, complex III subunitX , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38114,704,334 - 4,704,394EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913402 AgrOrtholog
Ensembl Genes ENSMUSG00000059534 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000058407 ENTREZGENE
  ENSMUST00000058407.6 UniProtKB/Swiss-Prot
  ENSMUST00000151559 ENTREZGENE
Gene3D-CATH 1.20.5.260 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro QCR9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  QCR9_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66152 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1913402 ENTREZGENE
NCBI Gene 66152 ENTREZGENE
PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT 9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12980 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UCR_UQCRX_QCR9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Uqcr10 PhenoGen
Superfamily-SCOP SSF81514 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q5NCJ9 ENTREZGENE, UniProtKB/TrEMBL
  Q8R1I1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Uqcr10  ubiquinol-cytochrome c reductase, complex III subunit X  1110020P15Rik  RIKEN cDNA 1110020P15 gene  Symbol and/or name change 5135510 APPROVED