1700066M21Rik (RIKEN cDNA 1700066M21 gene) - Rat Genome Database

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Gene: 1700066M21Rik (RIKEN cDNA 1700066M21 gene) Mus musculus
Analyze
Symbol: 1700066M21Rik
Name: RIKEN cDNA 1700066M21 gene
RGD ID: 1332576
MGI Page MGI
Description: Predicted to be involved in oxidative phosphorylation. Predicted to be located in respirasome. Predicted to be active in mitochondrion. Is expressed in mandible; maxilla; and orbito-sphenoid. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 53. Orthologous to human C2orf69 (chromosome 2 open reading frame 69).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI428479; expressed sequence AI428479; hypothetical protein LOC73467; mitochondrial protein C2orf69 homolog; UPF0565 protein C2orf69 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39157,416,755 - 57,424,587 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl157,416,779 - 57,424,582 (+)EnsemblGRCm39 Ensembl
GRCm38157,377,596 - 57,385,428 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl157,377,620 - 57,385,423 (+)EnsemblGRCm38mm10GRCm38
MGSCv37157,434,464 - 57,442,267 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36157,322,172 - 57,328,503 (+)NCBIMGSCv36mm8
Celera157,892,076 - 57,899,879 (+)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map128.78NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrion  (IBA,ISO)
respirasome  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635  


Genomics

Comparative Map Data
1700066M21Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39157,416,755 - 57,424,587 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl157,416,779 - 57,424,582 (+)EnsemblGRCm39 Ensembl
GRCm38157,377,596 - 57,385,428 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl157,377,620 - 57,385,423 (+)EnsemblGRCm38mm10GRCm38
MGSCv37157,434,464 - 57,442,267 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36157,322,172 - 57,328,503 (+)NCBIMGSCv36mm8
Celera157,892,076 - 57,899,879 (+)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map128.78NCBI
C2orf69
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382199,911,293 - 199,928,273 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2199,911,293 - 199,955,935 (+)EnsemblGRCh38hg38GRCh38
GRCh372200,776,016 - 200,792,996 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362200,484,274 - 200,501,241 (+)NCBINCBI36Build 36hg18NCBI36
Celera2194,531,108 - 194,547,696 (+)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2192,628,617 - 192,645,678 (+)NCBIHuRef
CHM1_12200,782,113 - 200,799,121 (+)NCBICHM1_1
T2T-CHM13v2.02200,394,882 - 200,411,904 (+)NCBIT2T-CHM13v2.0
C9h2orf69
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8966,444,084 - 66,452,720 (+)NCBIGRCr8
mRatBN7.2958,949,821 - 58,958,456 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl958,949,846 - 58,958,561 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx967,450,931 - 67,459,449 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0972,566,852 - 72,575,370 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0970,884,913 - 70,893,431 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0964,066,579 - 64,075,197 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl964,066,579 - 64,075,197 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0963,871,338 - 63,881,044 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4956,272,657 - 56,281,182 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1956,419,695 - 56,426,405 (+)NCBI
Celera956,396,183 - 56,404,793 (+)NCBICelera
Cytogenetic Map9q31NCBI
CUNH2orf69
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554031,349,489 - 1,352,541 (-)NCBIChiLan1.0ChiLan1.0
C13H2orf69
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213102,529,719 - 102,546,620 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B102,544,721 - 102,561,622 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B87,160,309 - 87,177,161 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B205,319,042 - 205,335,744 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B205,319,094 - 205,333,361 (+)Ensemblpanpan1.1panPan2
C37H2orf69
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1379,092,569 - 9,106,741 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl379,092,658 - 9,104,287 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha379,979,641 - 9,997,748 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0378,991,929 - 9,010,096 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl378,991,463 - 9,003,625 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1378,981,914 - 9,000,014 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0378,953,790 - 8,971,871 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0378,950,956 - 8,969,122 (+)NCBIUU_Cfam_GSD_1.0
CUNH2orf69
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303157,079,449 - 157,087,212 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936825942,471 - 947,999 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936825936,690 - 948,102 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH2orf69
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11085,412,119 - 85,428,373 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1085,412,287 - 85,425,998 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040114,011,588 - 114,027,938 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH2orf69
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248891,001,585 - 1,008,350 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624889999,433 - 1,008,313 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 1700066M21Rik
311 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:522
Count of miRNA genes:360
Interacting mature miRNAs:418
Transcripts:ENSMUST00000042734
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
12879917Shm3_msperm head morphology 3 (mouse)14418690462946882Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14541777372975057Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4142307Shali1_msurvival time to hyperoxic acute lung injury 1 (mouse)Not determined5196402570406589Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse

Markers in Region
AI428479  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38157,385,078 - 57,385,221UniSTSGRCm38
MGSCv37157,441,922 - 57,442,065UniSTSGRCm37
Celera157,899,534 - 57,899,677UniSTS
Cytogenetic Map1C1UniSTS
Whitehead/MRC_RH1845.04UniSTS
UniSTS:234130  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38157,383,434 - 57,383,664UniSTSGRCm38
MGSCv37157,440,278 - 57,440,508UniSTSGRCm37
Celera157,897,890 - 57,898,120UniSTS
Cytogenetic Map1C1UniSTS
UniSTS:234131  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38157,385,083 - 57,385,362UniSTSGRCm38
MGSCv37157,441,927 - 57,442,206UniSTSGRCm37
Celera157,899,539 - 57,899,818UniSTS
Cytogenetic Map1C1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000042734   ⟹   ENSMUSP00000040240
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl157,416,779 - 57,424,582 (+)Ensembl
GRCm38.p6 Ensembl157,377,620 - 57,385,423 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185952
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl157,416,792 - 57,419,321 (+)Ensembl
GRCm38.p6 Ensembl157,377,633 - 57,380,162 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187255
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl157,416,799 - 57,419,237 (+)Ensembl
GRCm38.p6 Ensembl157,377,640 - 57,380,078 (+)Ensembl
RefSeq Acc Id: NM_028546   ⟹   NP_082822
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39157,416,779 - 57,424,582 (+)NCBI
GRCm38157,377,620 - 57,385,423 (+)NCBI
MGSCv37157,434,464 - 57,442,267 (+)RGD
Celera157,892,076 - 57,899,879 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030243183   ⟹   XP_030099043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39157,416,755 - 57,419,194 (+)NCBI
GRCm38157,377,596 - 57,380,035 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934779
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39157,416,755 - 57,424,587 (+)NCBI
Sequence:
RefSeq Acc Id: XR_373264
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39157,416,755 - 57,424,587 (+)NCBI
GRCm38157,377,596 - 57,385,428 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_082822 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099043 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB24787 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000040240
  ENSMUSP00000040240.3
GenBank Protein Q9D9H8 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_082822   ⟸   NM_028546
- Peptide Label: precursor
- UniProtKB: E9QNR4 (UniProtKB/Swiss-Prot),   Q9D9H8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030099043   ⟸   XM_030243183
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000040240   ⟸   ENSMUST00000042734

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D9H8-F1-model_v2 AlphaFold Q9D9H8 1-365 view protein structure

Promoters
RGD ID:6873756
Promoter ID:EPDNEW_M329
Type:initiation region
Name:1700066M21Rik_1
Description:Mus musculus RIKEN cDNA 1700066M21 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38157,377,623 - 57,377,683EPDNEW
RGD ID:6817077
Promoter ID:MM_KWN:801
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:AK006906_1700066M21RIK,   AK133406_4930558J18RIK,   NM_028546,   UC007BAX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36157,434,191 - 57,434,691 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920717 AgrOrtholog
Ensembl Genes ENSMUSG00000038323 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000042734 ENTREZGENE
  ENSMUST00000042734.3 UniProtKB/Swiss-Prot
InterPro UPF0565 UniProtKB/Swiss-Prot
KEGG Report mmu:73467 UniProtKB/Swiss-Prot
MGD MGI:1920717 ENTREZGENE
NCBI Gene 73467 ENTREZGENE
PANTHER PTHR31296 UniProtKB/Swiss-Prot
  UPF0565 PROTEIN C2ORF69 UniProtKB/Swiss-Prot
Pfam UPF0565 UniProtKB/Swiss-Prot
PhenoGen 1700066M21Rik PhenoGen
UniProt CB069_MOUSE UniProtKB/Swiss-Prot
  E9QNR4 ENTREZGENE
  Q9D9H8 ENTREZGENE
UniProt Secondary E9QNR4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-23 1700066M21Rik  RIKEN cDNA 1700066M21 gene  AI428479  expressed sequence AI428479  Data merged from RGD:1609583 737654 PROVISIONAL