Atp5b (ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Atp5b (ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit) Mus musculus
Analyze
Symbol: Atp5b
Name: ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
RGD ID: 1557957
MGI Page MGI
Description: Is predicted to contribute to ATPase activity and proton-transporting ATP synthase activity, rotational mechanism. Involved in cellular response to interleukin-7; lipid metabolic process; and negative regulation of cell adhesion involved in substrate-bound cell migration. Localizes to mitochondrion. Is expressed in several structures, including alimentary system; central nervous system; eye; heart; and integumental system. Orthologous to human ATP5F1B (ATP synthase F1 subunit beta); PARTICIPATES IN electron transport chain pathway; Alzheimer's disease pathway; Huntington's disease pathway; INTERACTS WITH (+)-dexrazoxane; 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1,2-dimethylhydrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: ATP synthase F1 subunit beta; ATP synthase subunit beta, mitochondrial; ATP synthase, H+ transporting mitochondrial F1 complex, alpha subunit; Atp5f1b; mitochondrial ATP synthase, H+ transporting F1 complex beta subunit
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm14647   Gm4707  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,919,176 - 127,926,257 (+)NCBIGRCm39mm39
GRCm39 Ensembl10127,919,142 - 127,926,260 (+)Ensembl
GRCm3810128,083,307 - 128,090,388 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,083,273 - 128,090,391 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710127,520,363 - 127,527,444 (+)NCBIGRCm37mm9NCBIm37
MGSCv3610127,486,256 - 127,493,337 (+)NCBImm8
Celera10130,478,043 - 130,485,124 (+)NCBICelera
Cytogenetic Map10D3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (EXP)
(Z)-3-butylidenephthalide  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2,2-tetramine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP,ISO)
2,6-dinitrotoluene  (ISO)
2-methyl-2-[4-(1,2,3,4-tetrahydronaphthalen-1-yl)phenoxy]propanoic acid  (ISO)
5-aza-2'-deoxycytidine  (ISO)
7,12-dimethyltetraphene  (ISO)
acrolein  (EXP)
aflatoxin B1  (EXP)
amiodarone  (ISO)
ammonium chloride  (ISO)
aniline  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bleomycin A2  (ISO)
cadmium dichloride  (ISO)
captan  (EXP)
carbon nanotube  (EXP)
chloropicrin  (ISO)
choline  (EXP)
chromium trinitrate  (EXP)
clobetasol  (EXP)
clofibrate  (ISO)
clozapine  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diclofenac  (ISO)
diethyl maleate  (ISO)
dioxygen  (EXP)
diuron  (ISO)
doxorubicin  (EXP,ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
flavonoids  (ISO)
folic acid  (EXP)
folpet  (EXP)
fulvestrant  (ISO)
furan  (ISO)
glyphosate  (ISO)
gold atom  (EXP)
gold(0)  (EXP)
hyaluronic acid  (ISO)
hydrogen peroxide  (ISO)
isoflavones  (ISO)
isoniazide  (EXP)
josamycin  (ISO)
L-ascorbic acid  (EXP)
L-methionine  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
lipopolysaccharide  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosomorpholine  (ISO)
nafenopin  (ISO)
naphthalene  (EXP)
nicotinic acid  (ISO)
nitric oxide  (EXP)
Nonylphenol  (ISO)
ochratoxin A  (EXP,ISO)
oxybenzone  (ISO)
paracetamol  (EXP,ISO)
paraoxon  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (ISO)
phenethyl isothiocyanate  (ISO)
PhIP  (ISO)
pioglitazone  (ISO)
piperonyl butoxide  (ISO)
potassium chromate  (EXP)
potassium dichromate  (EXP)
progesterone  (ISO)
promethazine  (ISO)
Pyridostigmine bromide  (ISO)
quercetin  (ISO)
rotenone  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (EXP)
sodium nitrate  (EXP)
streptozocin  (ISO)
sulforaphane  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP,ISO)
tanespimycin  (ISO)
testosterone  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
tolcapone  (ISO)
toluene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
troglitazone  (EXP,ISO)
valproic acid  (EXP,ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10349636   PMID:10657236   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12865426   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15489334  
PMID:15582152   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16196101   PMID:16602821   PMID:16751257   PMID:16916647   PMID:16944949   PMID:17208939   PMID:17276355   PMID:17309103  
PMID:17612527   PMID:17634366   PMID:17967808   PMID:18245779   PMID:18467876   PMID:18614015   PMID:18628400   PMID:18799693   PMID:19138174   PMID:19423573   PMID:19801635   PMID:19808025  
PMID:19941651   PMID:20686481   PMID:21069432   PMID:21193741   PMID:21267068   PMID:21490313   PMID:21565611   PMID:21780252   PMID:21873635   PMID:22673621   PMID:23889209   PMID:24296716  
PMID:24457600   PMID:25002142   PMID:25659849   PMID:26449648   PMID:26590968   PMID:26767982   PMID:27166947   PMID:27626380   PMID:27911303   PMID:28378742   PMID:29021295   PMID:29459677  
PMID:29530978   PMID:29581031   PMID:29988383   PMID:30196744   PMID:30333137   PMID:30550785   PMID:30562941   PMID:30595499   PMID:30713523   PMID:30947518   PMID:32325033  


Genomics

Comparative Map Data
Atp5b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,919,176 - 127,926,257 (+)NCBIGRCm39mm39
GRCm39 Ensembl10127,919,142 - 127,926,260 (+)Ensembl
GRCm3810128,083,307 - 128,090,388 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,083,273 - 128,090,391 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710127,520,363 - 127,527,444 (+)NCBIGRCm37mm9NCBIm37
MGSCv3610127,486,256 - 127,493,337 (+)NCBImm8
Celera10130,478,043 - 130,485,124 (+)NCBICelera
Cytogenetic Map10D3NCBI
ATP5F1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1256,638,175 - 56,645,984 (-)EnsemblGRCh38hg38GRCh38
GRCh381256,638,175 - 56,645,984 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371257,031,959 - 57,039,768 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,318,226 - 55,326,119 (-)NCBINCBI36hg18NCBI36
Build 341255,318,227 - 55,326,119NCBI
Celera1256,683,671 - 56,691,564 (-)NCBI
Cytogenetic Map12q13.3NCBI
HuRef1254,071,237 - 54,079,130 (-)NCBIHuRef
CHM1_11256,999,492 - 57,007,379 (-)NCBICHM1_1
Atp5f1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27515,454 - 521,858 (+)NCBI
Rnor_6.0 Ensembl72,504,695 - 2,511,749 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.072,504,708 - 2,511,748 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.072,484,095 - 2,490,338 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.471,376,552 - 1,383,228 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.171,377,178 - 1,383,228 (+)NCBI
Celera7394,648 - 401,125 (+)NCBICelera
Cytogenetic Map7q11NCBI
Atp5f1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554584,186,461 - 4,195,494 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554584,188,167 - 4,195,575 (-)NCBIChiLan1.0ChiLan1.0
ATP5F1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11232,519,749 - 32,527,753 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1232,519,749 - 32,527,753 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01232,264,570 - 32,272,419 (+)NCBIMhudiblu_PPA_v0panPan3
ATP5F1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110870,405 - 876,937 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10870,392 - 909,161 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha10933,592 - 940,127 (-)NCBI
ROS_Cfam_1.010879,724 - 886,261 (-)NCBI
UMICH_Zoey_3.110856,580 - 863,114 (-)NCBI
UNSW_CanFamBas_1.0101,099,743 - 1,106,277 (-)NCBI
UU_Cfam_GSD_1.0101,223,513 - 1,230,049 (-)NCBI
Atp5f1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,911,328 - 57,918,999 (+)NCBI
SpeTri2.0NW_004936646951,236 - 958,907 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5F1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,984,580 - 21,992,407 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,984,750 - 21,992,393 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2523,659,081 - 23,666,726 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5F1B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,587,608 - 52,600,057 (-)NCBI
ChlSab1.1 Ensembl1152,587,143 - 52,600,756 (-)Ensembl
Atp5f1b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480211,400,288 - 11,408,785 (+)NCBI

Position Markers
AW549786  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381771,458,380 - 71,458,468UniSTSGRCm38
GRCm3810128,089,115 - 128,090,063UniSTSGRCm38
MGSCv371771,807,720 - 71,807,808UniSTSGRCm37
MGSCv3710127,526,171 - 127,527,119UniSTSGRCm37
Celera1775,728,752 - 75,728,840UniSTS
Celera10130,483,851 - 130,484,799UniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map10D3UniSTS
Whitehead/MRC_RH17832.51UniSTS
ATP5B  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383105,942,781 - 105,942,962UniSTSGRCm38
MGSCv373105,745,699 - 105,745,880UniSTSGRCm37
Celera3108,133,202 - 108,133,383UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map3F2.2UniSTS
cM Map357.0UniSTS
cM Map10 UniSTS
cM Map387.0UniSTS
D17Wsu164e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381771,458,201 - 71,458,436UniSTSGRCm38
MGSCv371771,807,541 - 71,807,776UniSTSGRCm37
Celera1775,728,573 - 75,728,808UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17E1.3UniSTS
cM Map1742.5UniSTS
ATP5B  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381771,459,426 - 71,459,562UniSTSGRCm38
GRCm3810128,084,331 - 128,084,467UniSTSGRCm38
MGSCv371771,808,766 - 71,808,902UniSTSGRCm37
MGSCv3710127,521,387 - 127,521,523UniSTSGRCm37
Celera1775,729,798 - 75,729,934UniSTS
Celera10130,479,068 - 130,479,204UniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map10D3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069900000132500000Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097381196130694993Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097381196130694993Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397381196130694993Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097381196130694993Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097700000130694993Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97922739130694993Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099384730130694993Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099384730130694993Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099384730130694993Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10101150611130694993Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10101150611130694993Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101661259130694993Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101661259130694993Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102671003130694993Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10103011947130694993Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10103066603130694993Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103407822130694993Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104274116130694993Mouse
14746996Manh69_mmandible shape 69 (mouse)10104927733130694993Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105205399130694993Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105205399130694993Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105205399130694993Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105343808130694993Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105343808130694993Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105343808130694993Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108680038130694993Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108680038130694993Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108739225130694993Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108739225130694993Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108739225130694993Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108739225130694993Mouse
12911218Frct3a_mfear conditioning traits 3a (mouse)10122950065129631127Mouse
12911220Frct3c_mfear conditioning traits 3c (mouse)10122950065129631127Mouse
12879490Frct3_mfear conditioning traits 3 (mouse)10122950065129631127Mouse
12904001Opfaq10_mopen field activity QTL 10 (mouse)10125797802129630506Mouse
12911219Frct3b_mfear conditioning traits 3b (mouse)10127839705129631127Mouse
12911221Frct3d_mfear conditioning traits 3d (mouse)10127839705129631127Mouse
12904000Opfaq7_mopen field activity QTL 7 (mouse)10127910449129630506Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:687
Count of miRNA genes:378
Interacting mature miRNAs:435
Transcripts:ENSMUST00000026459, ENSMUST00000123803, ENSMUST00000124993, ENSMUST00000125992, ENSMUST00000126040, ENSMUST00000126751, ENSMUST00000127439, ENSMUST00000139295, ENSMUST00000144918
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_016774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC131120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF030559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ403100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000026459   ⟹   ENSMUSP00000026459
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl10128,083,273 - 128,090,391 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123803
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl10128,088,491 - 128,089,681 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124993
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl10128,086,230 - 128,089,152 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125992
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl10128,089,041 - 128,090,272 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126040
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl10128,085,746 - 128,090,160 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126751
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl10128,088,552 - 128,090,273 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127439
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl10128,083,306 - 128,084,086 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139295
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl10128,084,433 - 128,085,949 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144918
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl10128,087,681 - 128,089,051 (+)Ensembl
RefSeq Acc Id: NM_016774   ⟹   NP_058054
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910127,919,176 - 127,926,257 (+)NCBI
GRCm3810128,083,307 - 128,090,388 (+)ENTREZGENE
MGSCv3710127,520,363 - 127,527,444 (+)RGD
Celera10130,478,043 - 130,485,124 (+)RGD
cM Map10 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_058054 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB86421 (Get FASTA)   NCBI Sequence Viewer  
  AAH18392 (Get FASTA)   NCBI Sequence Viewer  
  AAH37127 (Get FASTA)   NCBI Sequence Viewer  
  AAH46616 (Get FASTA)   NCBI Sequence Viewer  
  ABD77233 (Get FASTA)   NCBI Sequence Viewer  
  BAB22802 (Get FASTA)   NCBI Sequence Viewer  
  BAB26846 (Get FASTA)   NCBI Sequence Viewer  
  BAC39095 (Get FASTA)   NCBI Sequence Viewer  
  BAE26587 (Get FASTA)   NCBI Sequence Viewer  
  BAE28692 (Get FASTA)   NCBI Sequence Viewer  
  BAE29691 (Get FASTA)   NCBI Sequence Viewer  
  BAE30095 (Get FASTA)   NCBI Sequence Viewer  
  BAE30540 (Get FASTA)   NCBI Sequence Viewer  
  BAE31497 (Get FASTA)   NCBI Sequence Viewer  
  BAE31630 (Get FASTA)   NCBI Sequence Viewer  
  BAE31720 (Get FASTA)   NCBI Sequence Viewer  
  BAE35088 (Get FASTA)   NCBI Sequence Viewer  
  BAE35331 (Get FASTA)   NCBI Sequence Viewer  
  BAE35529 (Get FASTA)   NCBI Sequence Viewer  
  BAE35689 (Get FASTA)   NCBI Sequence Viewer  
  BAE35911 (Get FASTA)   NCBI Sequence Viewer  
  BAE37764 (Get FASTA)   NCBI Sequence Viewer  
  BAE38829 (Get FASTA)   NCBI Sequence Viewer  
  BAE38888 (Get FASTA)   NCBI Sequence Viewer  
  BAE39161 (Get FASTA)   NCBI Sequence Viewer  
  BAE39267 (Get FASTA)   NCBI Sequence Viewer  
  BAE39301 (Get FASTA)   NCBI Sequence Viewer  
  BAE39769 (Get FASTA)   NCBI Sequence Viewer  
  BAE39797 (Get FASTA)   NCBI Sequence Viewer  
  BAE40537 (Get FASTA)   NCBI Sequence Viewer  
  BAE40749 (Get FASTA)   NCBI Sequence Viewer  
  BAE40961 (Get FASTA)   NCBI Sequence Viewer  
  EDL24542 (Get FASTA)   NCBI Sequence Viewer  
  P56480 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_058054   ⟸   NM_016774
- Peptide Label: precursor
- UniProtKB: P56480 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000026459   ⟸   ENSMUST00000026459

Promoters
RGD ID:6819024
Promoter ID:MM_KWN:5953
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000057840,   OTTMUST00000057841
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610127,519,971 - 127,520,471 (+)MPROMDB
RGD ID:6819605
Promoter ID:MM_KWN:5954
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000082844,   NR_030442,   OTTMUST00000057842
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610127,520,231 - 127,521,632 (+)MPROMDB
RGD ID:6819025
Promoter ID:MM_KWN:5955
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   Brain,   Kidney,   Liver,   MEF_B6
Transcripts:OTTMUST00000057844,   OTTMUST00000057845
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610127,522,331 - 127,523,407 (+)MPROMDB
RGD ID:6819029
Promoter ID:MM_KWN:5956
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000057843,   OTTMUST00000057847,   OTTMUST00000057848
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610127,524,921 - 127,526,172 (+)MPROMDB
RGD ID:8673566
Promoter ID:EPDNEW_M14813
Type:initiation region
Name:Atp5b_1
Description:Mus musculus ATP synthase, H+ transporting mitochondrial F1 complex,beta subunit , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810128,083,306 - 128,083,366EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107801 AgrOrtholog
Ensembl Genes ENSMUSG00000025393 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000026459 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000026459 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.1140.10 UniProtKB/Swiss-Prot
InterPro AAA+_ATPase UniProtKB/Swiss-Prot
  ATP_synth_F1_bsu UniProtKB/Swiss-Prot
  ATPase_a/bsu_AS UniProtKB/Swiss-Prot
  ATPase_F1/V1/A1_a/bsu_N UniProtKB/Swiss-Prot
  ATPase_F1/V1/A1_a/bsu_N_sf UniProtKB/Swiss-Prot
  ATPase_F1/V1/A1_a/bsu_nucl-bd UniProtKB/Swiss-Prot
  ATPase_F1/V1_b/a_C UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
KEGG Report mmu:11947 UniProtKB/Swiss-Prot
MGD MGI:107801 ENTREZGENE
NCBI Gene 11947 ENTREZGENE
Pfam ATP-synt_ab UniProtKB/Swiss-Prot
  ATP-synt_ab_N UniProtKB/Swiss-Prot
PhenoGen Atp5b PhenoGen
PROSITE ATPASE_ALPHA_BETA UniProtKB/Swiss-Prot
SMART AAA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50615 UniProtKB/Swiss-Prot
  SSF52540 UniProtKB/Swiss-Prot
TIGRFAMs atpD UniProtKB/Swiss-Prot
UniProt ATPB_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q0QEP4 UniProtKB/Swiss-Prot
  Q3TFD7 UniProtKB/Swiss-Prot
  Q3TIP9 UniProtKB/Swiss-Prot
  Q3TK44 UniProtKB/Swiss-Prot
  Q3TWD5 UniProtKB/Swiss-Prot
  Q3TX28 UniProtKB/Swiss-Prot
  Q3U6U4 UniProtKB/Swiss-Prot
  Q3U774 UniProtKB/Swiss-Prot
  Q3UB69 UniProtKB/Swiss-Prot
  Q3UF69 UniProtKB/Swiss-Prot
  Q8CI65 UniProtKB/Swiss-Prot
  Q8VEJ5 UniProtKB/Swiss-Prot
  Q9CTI7 UniProtKB/Swiss-Prot
  Q9CWX7 UniProtKB/Swiss-Prot