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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Alzheimer's disease | | ISO | TNF (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Alzheimer disease and protection against | ClinVar | PMID:10400991 and PMID:16908746 | asthma | | ISO | TNF (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Asthma and susceptibility to | ClinVar | PMID:10450718 more ... | COVID-19 | | ISO | TNF (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Susceptibility to severe coronavirus disease (COVID-19) | ClinVar | PMID:10450718 more ... | endometriosis | | ISO | TNF (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Endometriosis | ClinVar | PMID:10450718 more ... | malaria | | ISO | TNF (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Malaria more ... | ClinVar | PMID:10369255 more ... | megacolon | | ISO | TNF (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Megacolon | ClinVar | PMID:21681106 | migraine | | ISO | TNF (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Migraine with or without aura more ... | ClinVar | PMID:25741868 | proteasome-associated autoinflammatory syndrome 1 | | ISO | TNF (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Proteasome-associated autoinflammatory syndrome 1 | ClinVar | PMID:28492532 | psoriatic arthritis | | ISO | TNF (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Psoriatic arthritis and susceptibility to | ClinVar | PMID:10450718 more ... | systemic lupus erythematosus | | ISO | TNF (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Systemic lupus erythematosus and susceptibility to | ClinVar | PMID:10450718 more ... | |
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PMID:1503261 | PMID:1680808 | PMID:1874444 | PMID:2216741 | PMID:2478420 | PMID:11169259 | PMID:16034134 | PMID:16365405 | PMID:16606437 | PMID:16857205 | PMID:17098266 | PMID:17170366 |
PMID:17903420 | PMID:19261619 | PMID:19324350 | PMID:19520150 | PMID:19558791 | PMID:19605905 | PMID:19642909 | PMID:20027315 | PMID:20701940 | PMID:21152396 | PMID:21205430 | PMID:21314908 |
PMID:21471537 | PMID:22301074 | PMID:22497732 | PMID:22699004 | PMID:22768175 | PMID:22994292 | PMID:23090779 | PMID:23102097 | PMID:24066302 | PMID:24098322 | PMID:24139936 | PMID:25708177 |
PMID:26724939 | PMID:27125399 | PMID:27408333 | PMID:27618228 | PMID:27660103 | PMID:28683436 | PMID:30032202 | PMID:30317108 | PMID:30782567 | PMID:31213269 | PMID:34445450 |
TNF (Sus scrofa - pig) |
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TNF (Homo sapiens - human) |
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Tnf (Mus musculus - house mouse) |
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Tnf (Rattus norvegicus - Norway rat) |
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Tnf (Chinchilla lanigera - long-tailed chinchilla) |
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TNF (Pan paniscus - bonobo/pygmy chimpanzee) |
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TNF (Canis lupus familiaris - dog) |
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Tnf (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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TNF (Chlorocebus sabaeus - green monkey) |
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Tnf (Heterocephalus glaber - naked mole-rat) |
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Variants in TNF
56 total Variants |
alimentary part of gastrointestinal system | circulatory system | hemolymphoid system | nervous system | reproductive system | respiratory system | |
High | ||||||
Medium | ||||||
Low | 7 | 2 | 5 | 1 | 1 | 3 |
Below cutoff | 3 | 8 | 1 |
RefSeq Transcripts | NM_214022 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
GenBank Nucleotide | AEMK02000053 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AJ251914 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AY572787 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BX548169 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CU467793 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
EU682384 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GFLN01060898 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GQ339058 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JF831365 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JX482568 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
M29079 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
X54001 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
X54859 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
X57321 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSSSCT00000001533 ⟹ ENSSSCP00000001491 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSSSCT00000067500 ⟹ ENSSSCP00000062245 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSSSCT00000096809 ⟹ ENSSSCP00000079669 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSSSCT00000104535 ⟹ ENSSSCP00000075411 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_214022 ⟹ NP_999187 | ||||||||
RefSeq Status: | PROVISIONAL | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_999187 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | AAA31128 | (Get FASTA) | NCBI Sequence Viewer |
AAS78983 | (Get FASTA) | NCBI Sequence Viewer | |
ACD81655 | (Get FASTA) | NCBI Sequence Viewer | |
AEP25618 | (Get FASTA) | NCBI Sequence Viewer | |
AFV67975 | (Get FASTA) | NCBI Sequence Viewer | |
CAA37949 | (Get FASTA) | NCBI Sequence Viewer | |
CAA38639 | (Get FASTA) | NCBI Sequence Viewer | |
CAA40591 | (Get FASTA) | NCBI Sequence Viewer | |
CAB63852 | (Get FASTA) | NCBI Sequence Viewer | |
CAN59689 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSSSCP00000075411 | ||
ENSSSCP00000075411.1 | |||
ENSSSCP00000079669.1 | |||
ENSSSCP00005031803.1 | |||
ENSSSCP00015031063.1 | |||
ENSSSCP00025048968.1 | |||
ENSSSCP00030042263.1 | |||
ENSSSCP00035009452.1 | |||
ENSSSCP00035009460.1 | |||
ENSSSCP00040043236.1 | |||
ENSSSCP00045046558.1 | |||
ENSSSCP00050003415.1 | |||
ENSSSCP00055045643.1 | |||
ENSSSCP00060025133.1 | |||
ENSSSCP00065014573.1 | |||
ENSSSCP00065014577.1 | |||
ENSSSCP00070040652.1 | |||
GenBank Protein | P23563 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_999187 ⟸ NM_214022 |
- UniProtKB: | A5D9N8 (UniProtKB/Swiss-Prot), P23563 (UniProtKB/Swiss-Prot), B3GDZ6 (UniProtKB/TrEMBL), A0A5G2QEW4 (UniProtKB/TrEMBL), A0A8D0Z2F8 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSSSCP00000001491 ⟸ ENSSSCT00000001533 |
RefSeq Acc Id: | ENSSSCP00000062245 ⟸ ENSSSCT00000067500 |
RefSeq Acc Id: | ENSSSCP00000079669 ⟸ ENSSSCT00000096809 |
RefSeq Acc Id: | ENSSSCP00000075411 ⟸ ENSSSCT00000104535 |
Database | Acc Id | Source(s) |
Ensembl Genes | ENSSSCG00000001404 | Ensembl |
ENSSSCG00000060860 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ENSSSCG00005032154 | UniProtKB/Swiss-Prot | |
ENSSSCG00015057632 | UniProtKB/Swiss-Prot | |
ENSSSCG00025077751 | UniProtKB/Swiss-Prot | |
ENSSSCG00030065721 | UniProtKB/Swiss-Prot | |
ENSSSCG00035019345 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ENSSSCG00040070661 | UniProtKB/Swiss-Prot | |
ENSSSCG00045038014 | UniProtKB/Swiss-Prot | |
ENSSSCG00050005898 | UniProtKB/Swiss-Prot | |
ENSSSCG00055028741 | UniProtKB/Swiss-Prot | |
ENSSSCG00060043262 | UniProtKB/Swiss-Prot | |
ENSSSCG00065026040 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ENSSSCG00070024118 | UniProtKB/Swiss-Prot | |
Ensembl Transcript | ENSSSCT00000096809.1 | UniProtKB/TrEMBL |
ENSSSCT00000104535 | ENTREZGENE | |
ENSSSCT00000104535.1 | UniProtKB/Swiss-Prot | |
ENSSSCT00005051419.1 | UniProtKB/Swiss-Prot | |
ENSSSCT00015077176.1 | UniProtKB/Swiss-Prot | |
ENSSSCT00025108213.1 | UniProtKB/Swiss-Prot | |
ENSSSCT00030091837.1 | UniProtKB/Swiss-Prot | |
ENSSSCT00035025057.1 | UniProtKB/Swiss-Prot | |
ENSSSCT00035025067.1 | UniProtKB/TrEMBL | |
ENSSSCT00040097071.1 | UniProtKB/Swiss-Prot | |
ENSSSCT00045065761.1 | UniProtKB/Swiss-Prot | |
ENSSSCT00050008020.1 | UniProtKB/Swiss-Prot | |
ENSSSCT00055057060.1 | UniProtKB/Swiss-Prot | |
ENSSSCT00060058688.1 | UniProtKB/Swiss-Prot | |
ENSSSCT00065034958.1 | UniProtKB/Swiss-Prot | |
ENSSSCT00065034964.1 | UniProtKB/TrEMBL | |
ENSSSCT00070048157.1 | UniProtKB/Swiss-Prot | |
Gene3D-CATH | 2.60.120.40 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
InterPro | TNF | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
TNF_alpha | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
TNF_CS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
TNF_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Tumour_necrosis_fac-like_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | ssc:397086 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
NCBI Gene | TNF | ENTREZGENE |
PANTHER | PTHR11471:SF23 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
TUMOR NECROSIS FACTOR FAMILY MEMBER | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | TNF | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PRINTS | TNECROSISFCT | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
TNFALPHA | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PROSITE | TNF_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
TNF_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | TNF | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SSF49842 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A5G2QEW4 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8D0Z2F8 | ENTREZGENE, UniProtKB/TrEMBL | |
A5D9N8 | ENTREZGENE | |
B3GDZ6 | ENTREZGENE, UniProtKB/TrEMBL | |
P23563 | ENTREZGENE, UniProtKB/Swiss-Prot | |
UniProt Secondary | A5D9N8 | UniProtKB/Swiss-Prot |
VGNC ID | VGNC:94249 | ENTREZGENE |