Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:phosphatidylcholine metabolic process
go back to main search page
Accession:GO:0046470 term browser browse the term
Definition:The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes.
Synonyms:exact_synonym: phosphatidylcholine metabolism


show annotations for term's descendants           Sort by:
 
phosphatidylcholine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca3 ATP binding cassette subfamily A member 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:3709444|PMID:17267394)
(PMID:17574245), (PMID:28887056)
UniProt
RGD
PMID:17267394 PMID:17574245 PMID:28887056 GO_REF:0000024 MGI:3709444 NCBI chr10:13,723,365...13,780,558
Ensembl chr10:13,723,405...13,779,963
JBrowse link
G Abhd3 abhydrolase domain containing 3, phospholipase involved_in ISO
IBA
(PMID:21926997)
(MGI:5617348|PMID:21926997)
PMID:21873635
RGD PMID:21926997, PMID:21873635 MGI:5617348, RGD:13792537 NCBI chr18:1,892,413...1,946,840
Ensembl chr18:1,892,413...1,946,840
JBrowse link
G Apoa1 apolipoprotein A1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:50,525,091...50,526,875
Ensembl chr 8:50,525,091...50,526,875
JBrowse link
G Apoa4 apolipoprotein A4 involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:1935934)
Ensembl
RGD
PMID:1935934, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:50,536,983...50,539,371
Ensembl chr 8:50,537,009...50,539,376
JBrowse link
G Apoa5 apolipoprotein A5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:50,559,079...50,561,720
Ensembl chr 8:50,559,126...50,561,736
JBrowse link
G Gpld1 glycosylphosphatidylinositol specific phospholipase D1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr17:42,085,027...42,131,344
Ensembl chr17:42,085,028...42,127,678
JBrowse link
G Hsd3b1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 IEP RGD PMID:2590715 RGD:4889588
G Lcat lecithin cholesterol acyltransferase involved_in ISO
ISS
(PMID:26195816)
GO_REF:0000024
RGD
UniProt
PMID:26195816 GO_REF:0000024 NCBI chr19:37,913,333...37,916,799
Ensembl chr19:37,913,336...37,916,813
JBrowse link
G Lipc lipase C, hepatic type IDA RGD PMID:2223857 RGD:1600650 NCBI chr 8:77,272,582...77,398,485
Ensembl chr 8:77,272,570...77,398,248
JBrowse link
G Mecp2 methyl CpG binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2137311 (MGI:3769075|PMID:17237885)
Ensembl
RGD
PMID:17237885 GO_REF:0000107 MGI:3769075 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Pla2g10 phospholipase A2, group X involved_in ISO
ISS
(PMID:12359733), (PMID:16146426), (PMID:16962371)
(MGI:2446974|PMID:12359733)
GO_REF:0000024
RGD
UniProt
PMID:12359733 PMID:16146426 PMID:16962371 GO_REF:0000024 MGI:2446974 NCBI chr10:1,509,732...1,520,970
Ensembl chr10:1,509,732...1,520,970
JBrowse link
G Pla2g15 phospholipase A2, group XV involved_in IMP
IBA
ISO
ISS
PMID:21873635
(PMID:29724779)
GO_REF:0000024
RGD
UniProt
PMID:29724779, PMID:11238016, PMID:21873635 GO_REF:0000024, RGD:1582127, RGD:13792537 NCBI chr19:38,129,666...38,146,958
Ensembl chr19:38,129,584...38,146,956
JBrowse link
G Pla2g1b phospholipase A2 group IB involved_in ISO (PMID:17603006), (PMID:7060561) RGD PMID:7060561 PMID:17603006 NCBI chr12:46,879,346...46,890,234
Ensembl chr12:46,879,343...46,889,082
JBrowse link
G Pla2g2a phospholipase A2 group IIA involved_in ISO
ISS
(PMID:25082876)
GO_REF:0000024
RGD
UniProt
PMID:25082876 GO_REF:0000024 NCBI chr 5:157,282,650...157,285,295
Ensembl chr 5:157,282,669...157,285,328
JBrowse link
G Pla2g2d phospholipase A2, group IID involved_in ISO (PMID:10681567)
(MGI:1346886|PMID:10531313)
RGD PMID:10531313 PMID:10681567 MGI:1346886 NCBI chr 5:157,222,636...157,228,795
Ensembl chr 5:157,222,636...157,228,791
JBrowse link
G Pla2g2e phospholipase A2, group IIE involved_in ISO (MGI:1346886|PMID:10531313) RGD PMID:10531313 MGI:1346886 NCBI chr 5:157,327,657...157,333,039
Ensembl chr 5:157,327,657...157,333,039
JBrowse link
G Pla2g3 phospholipase A2, group III involved_in
acts_upstream_of_or_within
ISO (PMID:28947740)
MGI:4461174 (MGI:4459354|PMID:20424323)
RGD PMID:20424323 PMID:28947740 MGI:4459354 NCBI chr14:83,724,828...83,730,614
Ensembl chr14:83,724,933...83,730,614
JBrowse link
G Plaat1 phospholipase A and acyltransferase 1 involved_in ISO (PMID:21880860) RGD PMID:21880860 NCBI chr11:75,125,951...75,145,868
Ensembl chr11:75,125,952...75,144,903
JBrowse link
G Pnpla6 patatin-like phospholipase domain containing 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:2,068,749...2,098,139
Ensembl chr12:2,069,959...2,097,904
JBrowse link
G Pon1 paraoxonase 1 involved_in ISO (PMID:15721011) RGD PMID:15721011 NCBI chr 4:30,249,749...30,276,297
Ensembl chr 4:30,249,742...30,276,372
JBrowse link
CDP-choline pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cept1 choline/ethanolamine phosphotransferase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:209,118,140...209,162,071
Ensembl chr 2:209,118,922...209,160,653
JBrowse link
G Chka choline kinase alpha involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:219,076,618...219,126,221
Ensembl chr 1:219,077,771...219,126,220
JBrowse link
G Chkb choline kinase beta involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:130,404,818...130,408,813
Ensembl chr 7:130,404,832...130,408,187
JBrowse link
G Chpt1 choline phosphotransferase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:29,019,518...29,070,928
Ensembl chr 7:29,043,916...29,070,928
JBrowse link
G Pcyt1a phosphate cytidylyltransferase 1A, choline involved_in IDA
ISO
PMID:19783652
(MGI:2667298|PMID:12842190)
PMID:8185307
(PMID:10480912)
PMID:8381041
RGD PMID:10480912 PMID:12842190, PMID:19783652, PMID:8185307, PMID:8381041 MGI:2667298, RGD:8553740, RGD:39458015, RGD:729578 NCBI chr11:71,547,865...71,592,037
Ensembl chr11:71,548,222...71,591,502
JBrowse link
G Pcyt1b phosphate cytidylyltransferase 1B, choline involved_in IEA
ISO
ISS
GO_REF:0000107
GO_REF:0000002
(MGI:2667298|PMID:12842190)
GO_REF:0000024
(PMID:10480912)
Ensembl
InterPro
RGD
UniProt
PMID:10480912 PMID:12842190 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107 MGI:2667298 NCBI chr  X:62,727,691...62,821,199
Ensembl chr  X:62,727,755...62,818,522
JBrowse link
G Phka1 phosphorylase kinase regulatory subunit alpha 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:72,377,020...72,515,385
Ensembl chr  X:72,377,021...72,515,366
JBrowse link
negative regulation of phosphatidylcholine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of_or_within ISO (MGI:4460850|PMID:20018880) RGD PMID:20018880 MGI:4460850 NCBI chr 1:32,379,431...32,429,917
Ensembl chr 1:32,379,432...32,429,917
JBrowse link
negative regulation of phosphatidylcholine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoc1 apolipoprotein C1 involved_in ISO (PMID:2302419) RGD PMID:2302419 NCBI chr 1:80,606,638...80,609,921
Ensembl chr 1:80,606,638...80,609,921
JBrowse link
phosphatidylcholine acyl-chain remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbi diazepam binding inhibitor, acyl-CoA binding protein involved_in ISO (PMID:21079819) RGD PMID:21079819 NCBI chr13:36,147,667...36,156,076
Ensembl chr13:36,117,119...36,174,908
JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 involved_in ISO (PMID:21498505) RGD PMID:21498505 NCBI chr 1:32,379,431...32,429,917
Ensembl chr 1:32,379,432...32,429,917
JBrowse link
G Lpcat2 lysophosphatidylcholine acyltransferase 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:21498505)
Ensembl
RGD
PMID:21498505 GO_REF:0000107 NCBI chr19:15,470,177...15,540,704
Ensembl chr19:15,469,303...15,540,773
JBrowse link
G Lpcat3 lysophosphatidylcholine acyltransferase 3 involved_in ISO
ISS
(PMID:18195019), (PMID:18772128), (PMID:18782225)
(MGI:5548036|PMID:24206663), (MGI:5636535|PMID:25806685), (MGI:5751339|PMID:25898003), (MGI:5927299|PMID:28846071), (MGI:6436389|PMID:18287005)
GO_REF:0000024
RGD
UniProt
PMID:18195019 PMID:18287005 PMID:18772128 PMID:18782225 PMID:24206663 PMID:25806685 PMID:25898003 PMID:28846071 GO_REF:0000024 MGI:5548036 MGI:5636535 MGI:5751339 MGI:5927299 MGI:6436389 NCBI chr 4:157,181,722...157,222,997
Ensembl chr 4:157,181,795...157,222,996
JBrowse link
G Lpcat4 lysophosphatidylcholine acyltransferase 4 involved_in ISO (PMID:18458083)
(MGI:3772495|PMID:18156367)
RGD PMID:18156367 PMID:18458083 MGI:3772495 NCBI chr 3:103,725,762...103,733,888
Ensembl chr 3:103,726,238...103,733,354
JBrowse link
G Mboat2 membrane bound O-acyltransferase domain containing 2 involved_in ISO
ISS
(PMID:18772128)
(MGI:6436389|PMID:18287005)
GO_REF:0000024
RGD
UniProt
PMID:18287005 PMID:18772128 GO_REF:0000024 MGI:6436389 NCBI chr 6:44,009,872...44,135,501
Ensembl chr 6:44,009,872...44,131,387
JBrowse link
G Mboat7 membrane bound O-acyltransferase domain containing 7 involved_in ISO (PMID:18772128) RGD PMID:18772128 NCBI chr 1:64,100,159...64,114,437
Ensembl chr 1:64,101,018...64,113,792
JBrowse link
G Nr1h2 nuclear receptor subfamily 1, group H, member 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5548036|PMID:24206663)
UniProt
RGD
PMID:24206663 GO_REF:0000024 MGI:5548036 NCBI chr 1:100,554,577...100,559,896
Ensembl chr 1:100,554,544...100,559,942
JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5548036|PMID:24206663)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:24206663 GO_REF:0000024 GO_REF:0000107 MGI:5548036 NCBI chr 3:80,004,130...80,014,197
Ensembl chr 3:80,004,130...80,012,750
JBrowse link
G Pla2g2f phospholipase A2, group IIF involved_in ISO (PMID:11112443) RGD PMID:11112443 NCBI chr 5:157,192,047...157,217,265
Ensembl chr 5:157,193,053...157,199,441
JBrowse link
G Pla2g4a phospholipase A2 group IVA involved_in ISO
IEA
(PMID:16617059)
GO_REF:0000107
RGD
Ensembl
PMID:16617059 GO_REF:0000107 NCBI chr13:67,062,252...67,206,688
Ensembl chr13:66,988,937...67,206,693
JBrowse link
G Pla2g4b phospholipase A2 group IVB involved_in ISO (PMID:10358058), (PMID:16617059) RGD PMID:10358058 PMID:16617059 NCBI chr 3:111,824,919...111,833,526
Ensembl chr 3:111,825,162...111,834,210
JBrowse link
G Pla2g4c phospholipase A2 group IVC involved_in ISO (PMID:19501189) RGD PMID:19501189 NCBI chr 1:75,440,035...75,481,995
Ensembl chr 1:75,428,027...75,620,911
JBrowse link
phosphatidylcholine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa1 apolipoprotein A1 involved_in ISO (PMID:4335615) RGD PMID:4335615 NCBI chr 8:50,525,091...50,526,875
Ensembl chr 8:50,525,091...50,526,875
JBrowse link
G Apoa2 apolipoprotein A2 involved_in ISO (PMID:14967812) RGD PMID:14967812 NCBI chr13:89,596,872...89,598,805
Ensembl chr13:89,597,138...89,598,802
JBrowse link
G Cept1 choline/ethanolamine phosphotransferase 1 acts_upstream_of_or_within ISO (MGI:4460850|PMID:20018880) RGD PMID:20018880 MGI:4460850 NCBI chr 2:209,118,140...209,162,071
Ensembl chr 2:209,118,922...209,160,653
JBrowse link
G Chka choline kinase alpha involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:3623691|PMID:16371353)
(PMID:19915674)
UniProt
RGD
PMID:16371353 PMID:19915674 GO_REF:0000024 MGI:3623691 NCBI chr 1:219,076,618...219,126,221
Ensembl chr 1:219,077,771...219,126,220
JBrowse link
G Chkb choline kinase beta acts_upstream_of_or_within ISO MGI:3578417 (MGI:3623691|PMID:16371353) RGD PMID:16371353 MGI:3623691 NCBI chr 7:130,404,818...130,408,813
Ensembl chr 7:130,404,832...130,408,187
JBrowse link
G Chpt1 choline phosphotransferase 1 involved_in
acts_upstream_of_or_within
ISO (PMID:10893425)
(MGI:4460850|PMID:20018880)
RGD PMID:10893425 PMID:20018880 MGI:4460850 NCBI chr 7:29,019,518...29,070,928
Ensembl chr 7:29,043,916...29,070,928
JBrowse link
G Dhrs7b dehydrogenase/reductase 7B acts_upstream_of_or_within ISO (MGI:6103958|PMID:28930673) RGD PMID:28930673 MGI:6103958 NCBI chr10:47,065,755...47,111,089
Ensembl chr10:47,065,850...47,111,101
JBrowse link
G Fabp5 fatty acid binding protein 5 acts_upstream_of_or_within ISO MGI:95476 (MGI:3045488|PMID:15164767) RGD PMID:15164767 MGI:3045488 NCBI chr 2:93,981,662...93,985,322
Ensembl chr 2:93,981,656...93,985,378
JBrowse link
G Fgf7 fibroblast growth factor 7 IMP surfactant disaturated phosphatidylcholine (DSPC) synthesis RGD PMID:11316745 RGD:68696 NCBI chr 3:118,315,859...118,368,464
Ensembl chr 3:118,317,761...118,366,872
JBrowse link
G Gpat4 glycerol-3-phosphate acyltransferase 4 involved_in ISO (PMID:18238778) RGD PMID:18238778 NCBI chr16:73,615,949...73,649,769
Ensembl chr16:73,615,949...73,649,767
JBrowse link
G Lcat lecithin cholesterol acyltransferase involved_in ISO (PMID:11966470), (PMID:12354767) RGD PMID:11966470 PMID:12354767 NCBI chr19:37,913,333...37,916,799
Ensembl chr19:37,913,336...37,916,813
JBrowse link
G Lpcat3 lysophosphatidylcholine acyltransferase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,181,722...157,222,997
Ensembl chr 4:157,181,795...157,222,996
JBrowse link
G Pcyt1a phosphate cytidylyltransferase 1A, choline acts_upstream_of_or_within
involved_in
TAS
ISO
IDA
IMP
MGI:2176050|MGI:3027956 (MGI:2159547|PMID:11829742), (MGI:3575987|PMID:15798219)
(MGI:2667298|PMID:12842190)
PMID:8381041
PMID:8185307
(PMID:10480912)
RGD PMID:10480912 PMID:11829742 PMID:12842190 PMID:15798219, PMID:2166941, PMID:8381041, PMID:8185307, PMID:12718547 MGI:2159547 MGI:2667298 MGI:3575987, RGD:70012, RGD:729578, RGD:39458015, RGD:729598 NCBI chr11:71,547,865...71,592,037
Ensembl chr11:71,548,222...71,591,502
JBrowse link
G Pcyt1b phosphate cytidylyltransferase 1B, choline involved_in ISO
ISS
(PMID:10480912)
(MGI:2667298|PMID:12842190)
GO_REF:0000024
RGD
UniProt
PMID:10480912 PMID:12842190 GO_REF:0000024 MGI:2667298 NCBI chr  X:62,727,691...62,821,199
Ensembl chr  X:62,727,755...62,818,522
JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase involved_in IDA
IBA
IEA
PMID:21873635
GO_REF:0000041
UniProt PMID:8344945, PMID:21873635 GO_REF:0000041, RGD:729486, RGD:13792537 NCBI chr10:46,339,821...46,404,640
Ensembl chr10:46,339,821...46,404,642
JBrowse link
G Phka1 phosphorylase kinase regulatory subunit alpha 1 TAS RGD PMID:12401806 RGD:724642 NCBI chr  X:72,377,020...72,515,385
Ensembl chr  X:72,377,021...72,515,366
JBrowse link
G Slc27a1 solute carrier family 27 member 1 involved_in ISO
IBA
IEA
(PMID:19523918)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:19523918, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr16:19,997,823...20,016,193
Ensembl chr16:19,999,112...20,016,190
JBrowse link
phosphatidylcholine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp2 ectonucleotide pyrophosphatase/phosphodiesterase 2 involved_in IBA
IEA
ISO
IDA
PMID:21873635
GO_REF:0000107
(MGI:5050048|PMID:21240269)
PMID:21240271
(PMID:21240271)
Ensembl
RGD
PMID:21240269 PMID:21240271, PMID:21873635, PMID:21240271 GO_REF:0000107 MGI:5050048, RGD:13792537, RGD:8553522 NCBI chr 7:94,479,931...94,563,086
Ensembl chr 7:94,480,396...94,563,001
JBrowse link
G Gdpd3 glycerophosphodiester phosphodiesterase domain containing 3 involved_in ISO (MGI:5616003|PMID:25528375) RGD PMID:25528375 MGI:5616003 NCBI chr 1:198,199,032...198,209,178
Ensembl chr 1:198,199,622...198,209,150
JBrowse link
G Pla2g10 phospholipase A2, group X involved_in IEA
ISO
GO_REF:0000107
(PMID:12021277)
Ensembl
RGD
PMID:12021277 GO_REF:0000107 NCBI chr10:1,509,732...1,520,970
Ensembl chr10:1,509,732...1,520,970
JBrowse link
G Pla2g15 phospholipase A2, group XV involved_in ISS
ISO
GO_REF:0000024
(MGI:3654404|PMID:16880524), (MGI:3694368|PMID:16837646), (MGI:6392937|PMID:17626977)
UniProt
RGD
PMID:16837646 PMID:16880524 PMID:17626977 GO_REF:0000024 MGI:3654404 MGI:3694368 MGI:6392937 NCBI chr19:38,129,666...38,146,958
Ensembl chr19:38,129,584...38,146,956
JBrowse link
G Pla2g4a phospholipase A2 group IVA involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:1100763|PMID:9403693)
GO_REF:0000024
(PMID:12672805), (PMID:14709560), (PMID:17472963), (PMID:7794891), (PMID:9425121)
Ensembl
RGD
UniProt
PMID:7794891 PMID:9403693 PMID:9425121 PMID:12672805 PMID:14709560 PMID:17472963 GO_REF:0000024 GO_REF:0000107 MGI:1100763 NCBI chr13:67,062,252...67,206,688
Ensembl chr13:66,988,937...67,206,693
JBrowse link
G Pla2g5 phospholipase A2, group V involved_in ISS
ISO
GO_REF:0000024
(PMID:23533611)
UniProt
RGD
PMID:23533611 GO_REF:0000024 NCBI chr 5:157,247,601...157,268,968
Ensembl chr 5:157,247,781...157,268,903
JBrowse link
G Pla2g6 phospholipase A2 group VI involved_in ISS
ISO
GO_REF:0000024
(PMID:20886109)
UniProt
RGD
PMID:20886109 GO_REF:0000024 NCBI chr 7:120,519,479...120,559,716
Ensembl chr 7:120,519,467...120,559,347
JBrowse link
G Pla2g7 phospholipase A2 group VII involved_in ISO (PMID:2040620) RGD PMID:2040620 NCBI chr 9:19,935,754...19,978,013
Ensembl chr 9:19,935,768...19,978,013
JBrowse link
G Plb1 phospholipase B1 involved_in IDA PMID:9442065
PMID:9442064
UniProt PMID:9442065, PMID:9442064 RGD:633237, RGD:30309923 NCBI chr 6:25,375,699...25,507,108
Ensembl chr 6:25,397,537...25,507,073
JBrowse link
G Pnliprp2 pancreatic lipase related protein 2 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:17401110)
Ensembl
UniProt
RGD
PMID:17401110 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:279,896,973...279,927,600
Ensembl chr 1:279,896,973...279,927,600
JBrowse link
G Pnpla7 patatin-like phospholipase domain containing 7 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:6393153|PMID:28887301)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:28887301 GO_REF:0000024 GO_REF:0000107 MGI:6393153 NCBI chr 3:2,182,191...2,261,890
Ensembl chr 3:2,182,957...2,261,878
Ensembl chr 3:2,182,957...2,261,878
JBrowse link
G Pnpla8 patatin-like phospholipase domain containing 8 involved_in ISO (PMID:15695510) RGD PMID:15695510 NCBI chr 6:64,224,870...64,288,465
Ensembl chr 6:64,224,861...64,286,785
JBrowse link
phosphatidylethanolamine acyl-chain remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lpcat3 lysophosphatidylcholine acyltransferase 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:5751339|PMID:25898003), (MGI:6436389|PMID:18287005)
(PMID:18772128), (PMID:18782225)
UniProt
RGD
PMID:18287005 PMID:18772128 PMID:18782225 PMID:25898003 GO_REF:0000024 MGI:5751339 MGI:6436389 NCBI chr 4:157,181,722...157,222,997
Ensembl chr 4:157,181,795...157,222,996
JBrowse link
G Lpcat4 lysophosphatidylcholine acyltransferase 4 involved_in ISO (PMID:18458083) RGD PMID:18458083 NCBI chr 3:103,725,762...103,733,888
Ensembl chr 3:103,726,238...103,733,354
JBrowse link
G Mboat1 membrane bound O-acyltransferase domain containing 1 involved_in ISO (MGI:6436389|PMID:18287005) RGD PMID:18287005 MGI:6436389 NCBI chr17:36,061,775...36,177,457
Ensembl chr17:36,061,775...36,177,457
JBrowse link
G Mboat2 membrane bound O-acyltransferase domain containing 2 involved_in ISO
ISS
(PMID:18772128)
(MGI:6436389|PMID:18287005)
GO_REF:0000024
RGD
UniProt
PMID:18287005 PMID:18772128 GO_REF:0000024 MGI:6436389 NCBI chr 6:44,009,872...44,135,501
Ensembl chr 6:44,009,872...44,131,387
JBrowse link
G Pla2g2f phospholipase A2, group IIF involved_in ISO (PMID:11112443)
(MGI:6467677|PMID:11877435)
RGD PMID:11112443 PMID:11877435 MGI:6467677 NCBI chr 5:157,192,047...157,217,265
Ensembl chr 5:157,193,053...157,199,441
JBrowse link
G Pla2g4b phospholipase A2 group IVB involved_in ISO (PMID:16617059) RGD PMID:16617059 NCBI chr 3:111,824,919...111,833,526
Ensembl chr 3:111,825,162...111,834,210
JBrowse link
G Pla2g4c phospholipase A2 group IVC involved_in ISO (PMID:19501189) RGD PMID:19501189 NCBI chr 1:75,440,035...75,481,995
Ensembl chr 1:75,428,027...75,620,911
JBrowse link
positive regulation of phosphatidylcholine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl3 acyl-CoA synthetase long-chain family member 3 involved_in ISO (PMID:18003621) RGD PMID:18003621 NCBI chr 9:84,569,601...84,593,565
Ensembl chr 9:84,569,597...84,593,565
JBrowse link
G Capn2 calpain 2 IMP RGD PMID:9481489 RGD:13792658 NCBI chr13:100,878,649...100,928,811
Ensembl chr13:100,878,650...100,928,811
JBrowse link
G Rab38 RAB38, member RAS oncogene family IDA RGD PMID:28438206 RGD:13524861 NCBI chr 1:152,072,716...152,153,449
Ensembl chr 1:152,072,665...152,153,449
JBrowse link
regulation of phosphatidylcholine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fabp3 fatty acid binding protein 3 acts_upstream_of_or_within ISO MGI:101790 (MGI:3045488|PMID:15164767) RGD PMID:15164767 MGI:3045488 NCBI chr 5:148,528,854...148,535,597
Ensembl chr 5:148,528,725...148,535,565
JBrowse link
regulation of phosphatidylcholine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ldlr low density lipoprotein receptor involved_in IEA
ISO
GO_REF:0000107
(MGI:3784112|PMID:18175806)
Ensembl
RGD
PMID:18175806 GO_REF:0000107 MGI:3784112 NCBI chr 8:22,750,425...22,773,305
Ensembl chr 8:22,750,336...22,774,903
JBrowse link
G Scarb1 scavenger receptor class B, member 1 involved_in ISO (MGI:3784112|PMID:18175806) RGD PMID:18175806 MGI:3784112 NCBI chr12:36,694,952...36,761,445
Ensembl chr12:36,694,960...36,761,455
JBrowse link
regulation of phosphatidylcholine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca3 ATP binding cassette subfamily A member 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:25817392), (PMID:31473345)
UniProt
RGD
PMID:25817392 PMID:31473345 GO_REF:0000024 NCBI chr10:13,723,365...13,780,558
Ensembl chr10:13,723,405...13,779,963
JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A acts_upstream_of ISO (PMID:26005868)
(MGI:6196220|PMID:30074985)
RGD PMID:26005868 PMID:30074985 MGI:6196220 NCBI chr 5:140,642,865...140,657,759
Ensembl chr 5:140,642,885...140,657,745
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    metabolic process 11797
      nitrogen compound metabolic process 10017
        organonitrogen compound metabolic process 6803
          phosphatidylcholine metabolic process 65
            negative regulation of phosphatidylcholine metabolic process + 2
            phosphatidylcholine acyl-chain remodeling 13
            phosphatidylcholine biosynthetic process + 22
            phosphatidylcholine catabolic process + 15
            phosphatidylethanolamine acyl-chain remodeling 7
            positive regulation of phosphatidylcholine metabolic process + 3
            regulation of phosphatidylcholine metabolic process + 10
Path 2
Term Annotations click to browse term
  biological_process 19491
    metabolic process 11797
      primary metabolic process 10565
        lipid metabolic process 1362
          cellular lipid metabolic process 1018
            glycerolipid metabolic process 389
              glycerophospholipid metabolic process 288
                phosphatidylcholine metabolic process 65
                  negative regulation of phosphatidylcholine metabolic process + 2
                  phosphatidylcholine acyl-chain remodeling 13
                  phosphatidylcholine biosynthetic process + 22
                  phosphatidylcholine catabolic process + 15
                  phosphatidylethanolamine acyl-chain remodeling 7
                  positive regulation of phosphatidylcholine metabolic process + 3
                  regulation of phosphatidylcholine metabolic process + 10
paths to the root