Abhd3 (abhydrolase domain containing 3, phospholipase) - Rat Genome Database

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Gene: Abhd3 (abhydrolase domain containing 3, phospholipase) Rattus norvegicus
Analyze
Symbol: Abhd3
Name: abhydrolase domain containing 3, phospholipase
RGD ID: 1310655
Description: Predicted to enable carboxylic ester hydrolase activity. Predicted to be involved in medium-chain fatty acid biosynthetic process; medium-chain fatty acid catabolic process; and phosphatidylcholine metabolic process. Predicted to be located in membrane. Orthologous to human ABHD3 (abhydrolase domain containing 3, phospholipase); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; aflatoxin B1; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: abhydrolase domain containing 3; abhydrolase domain-containing protein 3; LOC291793; phospholipase ABHD3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8181,996,010 - 2,051,311 (-)NCBIGRCr8
mRatBN7.2181,723,203 - 1,778,488 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl181,720,718 - 1,803,428 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx181,952,568 - 2,008,143 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0182,740,264 - 2,795,850 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0181,954,460 - 2,010,020 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0181,892,413 - 1,946,840 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,892,413 - 1,946,840 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,925,174 - 1,979,805 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,027,477 - 2,082,082 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1182,027,474 - 2,106,019 (-)NCBI
Celera181,603,943 - 1,659,266 (-)NCBICelera
Cytogenetic Map18p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2-palmitoylglycerol  (ISO)
7,12-dimethyltetraphene  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (EXP,ISO)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
chlordecone  (ISO)
ciglitazone  (ISO)
cisplatin  (ISO)
Clofop  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
GW 501516  (ISO)
inulin  (ISO)
mercury dibromide  (ISO)
methyl methanesulfonate  (ISO)
ochratoxin A  (EXP)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:21926997  


Genomics

Comparative Map Data
Abhd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8181,996,010 - 2,051,311 (-)NCBIGRCr8
mRatBN7.2181,723,203 - 1,778,488 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl181,720,718 - 1,803,428 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx181,952,568 - 2,008,143 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0182,740,264 - 2,795,850 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0181,954,460 - 2,010,020 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0181,892,413 - 1,946,840 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,892,413 - 1,946,840 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,925,174 - 1,979,805 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,027,477 - 2,082,082 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1182,027,474 - 2,106,019 (-)NCBI
Celera181,603,943 - 1,659,266 (-)NCBICelera
Cytogenetic Map18p13NCBI
ABHD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381821,650,901 - 21,704,774 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1821,650,901 - 21,704,780 (-)EnsemblGRCh38hg38GRCh38
GRCh371819,230,862 - 19,284,735 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361817,484,856 - 17,538,724 (-)NCBINCBI36Build 36hg18NCBI36
Build 341817,484,855 - 17,538,724NCBI
Celera1816,036,856 - 16,090,764 (-)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1816,077,990 - 16,131,762 (-)NCBIHuRef
CHM1_11819,157,962 - 19,211,880 (-)NCBICHM1_1
T2T-CHM13v2.01821,835,996 - 21,889,881 (-)NCBIT2T-CHM13v2.0
Abhd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391810,644,411 - 10,706,784 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1810,642,092 - 10,706,771 (-)EnsemblGRCm39 Ensembl
GRCm381810,644,411 - 10,706,783 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1810,642,092 - 10,706,771 (-)EnsemblGRCm38mm10GRCm38
MGSCv371810,644,409 - 10,706,694 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361810,644,409 - 10,706,694 (-)NCBIMGSCv36mm8
Celera1810,674,408 - 10,736,690 (-)NCBICelera
Cytogenetic Map18A1NCBI
cM Map185.28NCBI
Abhd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540210,316,297 - 10,356,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540210,316,881 - 10,355,760 (-)NCBIChiLan1.0ChiLan1.0
ABHD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21739,049,242 - 39,123,372 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11824,741,836 - 24,815,967 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01814,888,915 - 14,944,295 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11818,526,670 - 18,578,874 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1818,527,364 - 18,578,736 (-)Ensemblpanpan1.1panPan2
ABHD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1766,331,687 - 66,383,443 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl766,332,410 - 66,382,942 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha765,785,702 - 65,837,429 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0766,395,969 - 66,447,789 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl766,397,119 - 66,447,792 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1766,061,627 - 66,113,117 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0766,084,767 - 66,136,553 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0766,385,056 - 66,437,451 (+)NCBIUU_Cfam_GSD_1.0
Abhd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494462,408,000 - 62,451,161 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365501,359,606 - 1,407,925 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365501,359,570 - 1,408,080 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABHD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6106,851,627 - 106,917,531 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16106,851,625 - 106,917,720 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2699,355,413 - 99,401,087 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABHD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11858,795,497 - 58,842,714 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1858,795,865 - 58,842,824 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605033,573,847 - 33,619,867 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abhd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477010,073,444 - 10,113,235 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477010,073,462 - 10,126,062 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Abhd3
584 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:348
Count of miRNA genes:206
Interacting mature miRNAs:247
Transcripts:ENSRNOT00000041878
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat

Markers in Region
BE102283  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2181,765,985 - 1,766,139 (+)MAPPERmRatBN7.2
Rnor_6.0181,934,308 - 1,934,461NCBIRnor6.0
Rnor_5.0181,967,157 - 1,967,310UniSTSRnor5.0
RGSC_v3.4182,069,770 - 2,069,923UniSTSRGSC3.4
Celera181,647,077 - 1,647,230UniSTS
RH 3.4 Map1810.4UniSTS
Cytogenetic Map18p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000041878   ⟹   ENSRNOP00000047416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl181,723,203 - 1,803,428 (-)Ensembl
Rnor_6.0 Ensembl181,892,413 - 1,946,840 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110127   ⟹   ENSRNOP00000081406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl181,720,718 - 1,778,488 (-)Ensembl
RefSeq Acc Id: NM_001106162   ⟹   NP_001099632
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8181,996,010 - 2,051,289 (-)NCBI
mRatBN7.2181,723,203 - 1,778,488 (-)NCBI
Rnor_6.0181,892,413 - 1,946,840 (-)NCBI
Rnor_5.0181,925,174 - 1,979,805 (-)NCBI
RGSC_v3.4182,027,477 - 2,082,082 (-)RGD
Celera181,603,943 - 1,659,266 (-)RGD
Sequence:
RefSeq Acc Id: XM_063277269   ⟹   XP_063133339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,002,741 - 2,051,307 (-)NCBI
RefSeq Acc Id: XM_063277270   ⟹   XP_063133340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,002,741 - 2,051,311 (-)NCBI
RefSeq Acc Id: XM_063277271   ⟹   XP_063133341
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,002,284 - 2,051,310 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001099632 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133339 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133340 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133341 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL86673 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000047416.5
  ENSRNOP00000081406.1
RefSeq Acc Id: NP_001099632   ⟸   NM_001106162
- UniProtKB: A6KNE8 (UniProtKB/TrEMBL),   A0A8I5ZSG0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000047416   ⟸   ENSRNOT00000041878
Ensembl Acc Id: ENSRNOP00000081406   ⟸   ENSRNOT00000110127
RefSeq Acc Id: XP_063133341   ⟸   XM_063277271
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063133340   ⟸   XM_063277270
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133339   ⟸   XM_063277269
- Peptide Label: isoform X1
Protein Domains
AB hydrolase-1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A3D4-F1-model_v2 AlphaFold D4A3D4 1-411 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700631
Promoter ID:EPDNEW_R11155
Type:initiation region
Name:Abhd3_1
Description:abhydrolase domain containing 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0181,946,839 - 1,946,899EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310655 AgrOrtholog
BioCyc Gene G2FUF-8409 BioCyc
Ensembl Genes ENSRNOG00000029370 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041878.5 UniProtKB/TrEMBL
  ENSRNOT00000110127.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
InterPro AB-Hydro_YheT UniProtKB/TrEMBL
  AB_hydrolase UniProtKB/TrEMBL
  AB_hydrolase_1 UniProtKB/TrEMBL
  AB_hydrolase_4_sf UniProtKB/TrEMBL
  UPF0017_hydro-like_CS UniProtKB/TrEMBL
KEGG Report rno:291793 UniProtKB/TrEMBL
NCBI Gene 291793 ENTREZGENE
PANTHER ABHYDROLASE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PHOSPHOLIPASE ABHD3 UniProtKB/TrEMBL
Pfam Abhydrolase_1 UniProtKB/TrEMBL
PhenoGen Abhd3 PhenoGen
PIRSF Ab_hydro_YheT UniProtKB/TrEMBL
PROSITE UPF0017 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000029370 RatGTEx
Superfamily-SCOP SSF53474 UniProtKB/TrEMBL
UniProt A0A8I5ZSG0 ENTREZGENE, UniProtKB/TrEMBL
  A6KNE8 ENTREZGENE, UniProtKB/TrEMBL
  D4A3D4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-13 Abhd3  abhydrolase domain containing 3, phospholipase  Abhd3  abhydrolase domain containing 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Abhd3  abhydrolase domain containing 3   Abhd3_predicted  abhydrolase domain containing 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Abhd3_predicted  abhydrolase domain containing 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED