Slc27a1 (solute carrier family 27 member 1)

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Gene: Slc27a1 (solute carrier family 27 member 1) Rattus norvegicus

Analyze

Symbol:

Slc27a1

Name:

solute carrier family 27 member 1

RGD ID:

620927

Description:

Predicted to enable several functions, including fatty acid ligase activity; monocarboxylic acid transmembrane transporter activity; and protein serine/threonine kinase activator activity. Predicted to be involved in several processes, including cellular response to hormone stimulus; glycerophospholipid biosynthetic process; and monocarboxylic acid transport. Predicted to act upstream of or within carboxylic acid transmembrane transport and long-chain fatty acid transport. Located in caveola. Colocalizes with mitochondrial inner membrane. Biomarker of familial hyperlipidemia; glucose intolerance; hyperinsulinism; myocardial infarction; and obesity. Orthologous to human SLC27A1 (solute carrier family 27 member 1); PARTICIPATES IN eicosanoid signaling pathway via peroxisome proliferator-activated receptor gamma; INTERACTS WITH 1,1-dichloroethene; 2,3,7,8-tetrachlorodibenzodioxine; 2-Ethylhexanoic acid.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

arachidonate--CoA ligase; FATP; FATP-1; fatty acid transport protein; fatty acid transport protein 1; long-chain fatty acid transport protein 1; long-chain-fatty-acid--CoA ligase; solute carrier family 27 (fatty acid transporter), member 1; solute carrier family 27, member 1; very long-chain acyl-CoA synthetase

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	18,278,984 - 18,300,173 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	18,278,984 - 18,296,063 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	18,329,890 - 18,346,962 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	19,461,772 - 19,478,909 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	18,382,827 - 18,399,900 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	19,997,823 - 20,016,193 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	19,999,112 - 20,016,190 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	19,859,540 - 19,880,871 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	18,769,909 - 18,786,988 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	18,769,906 - 18,786,985 (+)	NCBI
Celera	16	18,482,929 - 18,499,970 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial hyperlipidemia (IEP)

genetic disease (ISO)

glucose intolerance (IEP)

hyperinsulinism (IEP)

Insulin Resistance (IDA)

Metabolic Syndrome (ISO)

myocardial infarction (IEP)

obesity (IEP,ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (EXP)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-Ethylhexanoic acid (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-Iodothyronamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime (ISO)

9-cis-retinoic acid (EXP,ISO)

actinomycin D (EXP,ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (EXP)

ammonium chloride (EXP)

anthra[1,9-cd]pyrazol-6(2H)-one (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

beta-hexachlorocyclohexane (ISO)

bexarotene (EXP,ISO)

bezafibrate (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

calcitriol (ISO)

captan (ISO)

cisplatin (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

dibutyl phthalate (EXP)

diquat (ISO)

doxorubicin (EXP,ISO)

epoxiconazole (ISO)

ethanol (ISO)

farnesol (ISO)

fenofibrate (ISO)

flutamide (EXP)

folic acid (ISO)

folpet (ISO)

genistein (EXP)

gentamycin (EXP)

GW 4064 (ISO)

GW 7647 (ISO)

indometacin (EXP)

inulin (ISO)

ivermectin (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

methamphetamine (ISO)

methotrexate (ISO)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (EXP)

monosodium L-glutamate (ISO)

nickel atom (ISO)

oleic acid (ISO)

paracetamol (EXP,ISO)

perfluorododecanoic acid (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

perfluoroundecanoic acid (ISO)

permethrin (EXP)

phenformin (EXP)

phenobarbital (ISO)

pioglitazone (ISO)

pirinixic acid (ISO)

rebaudioside A (ISO)

rifampicin (ISO)

rotenone (EXP)

silicon dioxide (ISO)

sodium dodecyl sulfate (ISO)

steviol (ISO)

stevioside (ISO)

streptozocin (EXP)

sulfluramid (ISO)

sulforaphane (ISO)

tamoxifen (ISO)

temozolomide (ISO)

testosterone (ISO)

tetrachloroethene (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

tributylstannane (ISO)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

vanadyl sulfate (EXP)

vinclozolin (EXP)

zinc atom (EXP)

zinc(0) (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adiponectin-activated signaling pathway (IBA,IEA,ISO)

biological_process (ND)

biotin import across plasma membrane (IEA,ISO)

biotin transport (ISO)

cardiolipin biosynthetic process (IBA,IEA,ISO)

export across plasma membrane (IEA,ISO)

fatty acid transport (ISO)

glucose import in response to insulin stimulus (IEA,ISO)

lipid metabolic process (IEA)

lipid transport across blood-brain barrier (IEA,ISO)

long-chain fatty acid import across plasma membrane (IEA,ISO)

long-chain fatty acid import into cell (IBA,ISO,ISS)

long-chain fatty acid metabolic process (IEA)

long-chain fatty acid transport (ISO)

medium-chain fatty acid transport (IBA,IEA,ISO)

negative regulation of phospholipid biosynthetic process (IBA,IEA,ISO)

phosphatidic acid biosynthetic process (IBA,IEA,ISO)

phosphatidylcholine biosynthetic process (IBA,IEA,ISO)

phosphatidylethanolamine biosynthetic process (IBA,IEA,ISO)

phosphatidylglycerol biosynthetic process (ISO)

phosphatidylinositol biosynthetic process (IBA,IEA,ISO)

phosphatidylserine biosynthetic process (IBA,IEA,ISO)

positive regulation of heat generation (IBA,IEA,ISO)

positive regulation of triglyceride biosynthetic process (IEA,ISO,ISS)

response to cold (IBA,IEA,ISO)

response to insulin (IBA,ISO)

Cellular Component

basal plasma membrane (IEA,ISO)

caveola (IDA)

endoplasmic reticulum (IEA,ISO)

mitochondrial inner membrane (IBA,IDA)

plasma membrane (IBA,ISO)

Molecular Function

arachidonate-CoA ligase activity (IEA)

biotin transmembrane transporter activity (IEA,ISO)

efflux transmembrane transporter activity (IEA,ISO)

fatty acid transmembrane transporter activity (IBA,IEA,ISO,NAS)

identical protein binding (IEA,ISO)

long-chain fatty acid transporter activity (IBA,IEA,ISO)

long-chain fatty acid-CoA ligase activity (IBA,ISO,ISS)

nucleotide binding (IEA)

oleate transmembrane transporter activity (IEA)

oleoyl-CoA ligase activity (IEA,ISO)

protein binding (IPI,ISO)

protein serine/threonine kinase activator activity (IEA,ISO)

very long-chain fatty acid-CoA ligase activity (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

eicosanoid signaling pathway via peroxisome proliferator-activated receptor gamma (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	The subcellular compartmentation of fatty acid transporters is regulated differently by insulin and by AICAR.	Chabowski A, etal., FEBS Lett. 2005 Apr 25;579(11):2428-32.
2.	Impairment of cardiac insulin signaling and myocardial contractile performance in high-cholesterol/fructose-fed rats.	Deng JY, etal., Am J Physiol Heart Circ Physiol. 2007 Aug;293(2):H978-87. Epub 2007 Mar 30.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Fatty acid transporter levels and palmitate oxidation rate correlate with ejection fraction in the infarcted rat heart.	Heather LC, etal., Cardiovasc Res. 2006 Dec 1;72(3):430-7. Epub 2006 Sep 1.
5.	Fiber type- and fatty acid composition-dependent effects of high-fat diets on rat muscle triacylglyceride and fatty acid transporter protein-1 content.	Marotta M, etal., Metabolism. 2004 Aug;53(8):1032-6.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	Separation and characterization of caveolae subclasses in the plasma membrane of primary adipocytes; segregation of specific proteins and functions.	Ortegren U, etal., FEBS J. 2006 Jul;273(14):3381-92. Epub 2006 Jun 26.
9.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
10.	GOA pipeline	RGD automated data pipeline
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Comprehensive gene review and curation	RGD comprehensive gene curation
13.	Molecular cloning of fatty acid-transport protein cDNA from rat.	Schaap FG, etal., Biochim Biophys Acta 1997 Oct 9;1354(1):29-34.
14.	Novel role of FATP1 in mitochondrial fatty acid oxidation in skeletal muscle cells.	Sebastian D, etal., J Lipid Res. 2009 May 9.
15.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
16.	FATP1 is an insulin-sensitive fatty acid transporter involved in diet-induced obesity.	Wu Q, etal., Mol Cell Biol. 2006 May;26(9):3455-67.

Additional References at PubMed

PMID:7954810	PMID:9671728	PMID:10593920	PMID:12235169	PMID:12533547	PMID:12566451	PMID:14991074	PMID:15496455	PMID:17130465	PMID:18258213	PMID:19523918	PMID:19560442
PMID:19946888	PMID:20667975	PMID:21395585	PMID:21442160	PMID:28035674	PMID:28178239	PMID:30053369	PMID:31091338

Genomics

Comparative Map Data

Slc27a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	18,278,984 - 18,300,173 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	18,278,984 - 18,296,063 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	18,329,890 - 18,346,962 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	19,461,772 - 19,478,909 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	18,382,827 - 18,399,900 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	19,997,823 - 20,016,193 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	19,999,112 - 20,016,190 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	19,859,540 - 19,880,871 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	18,769,909 - 18,786,988 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	18,769,906 - 18,786,985 (+)	NCBI
Celera	16	18,482,929 - 18,499,970 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

SLC27A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	17,468,767 - 17,506,168 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	17,468,769 - 17,506,168 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	17,581,333 - 17,616,977 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	17,442,300 - 17,477,977 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	17,482,907 - 17,518,593 (+)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	17,146,725 - 17,182,058 (+)	NCBI		HuRef
CHM1_1	19	17,580,668 - 17,616,359 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	17,602,871 - 17,640,805 (+)	NCBI		T2T-CHM13v2.0

Slc27a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	72,021,372 - 72,039,951 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	72,021,526 - 72,039,946 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	71,568,728 - 71,587,307 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	71,568,882 - 71,587,302 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	74,092,826 - 74,110,607 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	74,497,916 - 74,515,697 (+)	NCBI		MGSCv36	mm8
Celera	8	74,083,284 - 74,101,015 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.43	NCBI

Slc27a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	805,014 - 821,838 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	803,793 - 821,920 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC27A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	19	21,345,812 - 21,383,151 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	16,956,000 - 16,993,429 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	17,929,785 - 17,966,171 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	17,929,785 - 17,966,171 (+)	Ensembl	panpan1.1		panPan2

SLC27A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	45,309,094 - 45,341,101 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	45,310,088 - 45,340,230 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	45,223,163 - 45,255,236 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	45,796,156 - 45,828,264 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	45,796,156 - 45,829,217 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	45,032,656 - 45,064,717 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	45,442,740 - 45,474,725 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	45,718,788 - 45,750,750 (-)	NCBI		UU_Cfam_GSD_1.0

Slc27a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	203,877,674 - 203,901,327 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	3,427,874 - 3,449,489 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936596	3,426,807 - 3,451,259 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC27A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	60,203,388 - 60,235,588 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	60,203,374 - 60,235,689 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	59,752,658 - 59,771,672 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC27A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	15,967,126 - 15,995,039 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666074	3,430,291 - 3,458,931 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc27a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	531,308 - 549,990 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	531,313 - 549,570 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc27a1
181 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	179
Count of miRNA genes:	119
Interacting mature miRNAs:	144
Transcripts:	ENSRNOT00000024659
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	22477621	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26727669	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26727669	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	26727669	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	30836262	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	32139025	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33418960	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3380150	21361552	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	16	4227609	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4227609	43025077	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
631517	Scl9	Serum cholesterol level QTL 9	3.3		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	16	15726433	21034895	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat

Markers in Region

RH127318

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	18,288,679 - 18,288,883 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	20,008,807 - 20,009,010	NCBI	Rnor6.0
Rnor_5.0	16	19,869,235 - 19,869,438	UniSTS	Rnor5.0
RGSC_v3.4	16	18,779,604 - 18,779,807	UniSTS	RGSC3.4
Celera	16	18,492,586 - 18,492,789	UniSTS
Cytogenetic Map	16	p14	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	26	16	5	6	5			64	26	40	8
Low	1	17	41	36	13	36	8	11	10	9	1	3	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC122603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC074014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U89529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000024659 ⟹ ENSRNOP00000024659

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	18,278,984 - 18,296,063 (+)	Ensembl
Rnor_6.0 Ensembl	16	19,999,112 - 20,016,190 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000095535 ⟹ ENSRNOP00000077487

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	18,280,289 - 18,296,063 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101879 ⟹ ENSRNOP00000083160

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	18,279,789 - 18,296,042 (+)	Ensembl

RefSeq Acc Id:

NM_053580 ⟹ NP_446032

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	18,278,984 - 18,296,064 (+)	NCBI
Rnor_6.0	16	19,999,112 - 20,016,191 (+)	NCBI
Rnor_5.0	16	19,859,540 - 19,880,871 (+)	NCBI
RGSC_v3.4	16	18,769,909 - 18,786,988 (+)	RGD
Celera	16	18,482,929 - 18,499,970 (+)	RGD

Sequence:

show sequence

GGGACGGACAGGGCAGAGGCACGCAGGGGCGCAGTGAGAAGCGCCTAGGACTTTGCAAAGGGCT
CATCCCCTGAAGGGACCCACCAGCTAGGCCCGAGCTCAGAAGTTCCCACTCCAGACTTCTGCGA
GAACCCGTGAGGAAGCAGCGAGAACCGGGGGTTTGCAAGCCAGAGAAGGATGCGGACTCCGGGA
GCAGGAACAGCCTCTGTGGCCTCATTGGGGCTGCTTTGGCTTCTGGGACTTCCGTGGACCTGGA
GCGCGGCGGCGGCGTTCGGTGTGTACGTGGGTAGCGGTGGCTGGCGCTTTCTGCGTATCGTCTG
CAAGACGGCGAGGCGAGACCTCTTTGGCCTCTCTGTTCTGATCCGCGTGCGGCTAGAGCTACGA
CGACACCGGCGAGCAGGAGACACGATCCCACGCATCTTCCAGGCCGTGGCCCAGCGACAGCCGG
AGCGCCTGGCGCTGGTAGATGCGAGTAGCGGTATCTGCTGGACCTTCGCACAGCTAGACACCTA
CTCCAATGCTGTGGCCAATCTGTTCCTCCAGCTGGGCTTTGCGCCAGGCGATGTGGTGGCTGTG
TTCCTGGAAGGCCGGCCCGAGTTCGTGGGACTGTGGCTGGGCCTGGCCAAGGCCGGTGTAGTGG
CTGCGCTTCTCAATGTCAACCTGAGGCGGGAGCCCCTTGCCTTCTGCTTGGGCACATCAGCTGC
CAAGGCCCTCATTTATGGCGGGGAGATGGCAGCGGCGGTGGCGGAGGTGAGTGAGCAGCTGGGG
AAGAGCCTGCTCAAGTTCTGCTCTGGAGATCTGGGGCCTGAGAGCGTCCTGCCTGACACGCAGC
TTCTGGACCCCATGCTTGCTGAGGCGCCCACCACACCCCTGGCACAGGCCCCAGGCAAGGGCAT
GGATGATCGGCTATTTTACATCTATACTTCTGGGACCACCGGACTTCCTAAGGCGGCCATTGTG
GTGCACAGCAGGTACTACCGCATTGCAGCCTTCGGCCACCATTCCTACAGCATGCGGGCCAACG
ATGTGCTCTATGACTGCCTACCTCTCTACCACTCAGCAGGGAACATCATGGGCGTGGGACAGTG
TATCATCTACGGGTTAACGGTGGTACTGCGCAAGAAGTTCTCCGCCAGCCGCTTCTGGGACGAC
TGTGTCAAATATAATTGCACGGTAGTGCAGTACATCGGTGAAATATGCCGCTACCTGCTAAGGC
AGCCGGTTCGCGATGTAGAGCGGCGGCACCACGTGCGCCTGGCCGTGGGTAACGGACTGCGGCC
AGCCATCTGGGAGGAGTTCACGCAGCGTTTCGGTGTGCGACAGATTGGCGAGTTCTACGGCGCC
ACCGAGTGCAACTGCAGCATTGCCAACATGGACGGCAAGGTCGGCTCCTGCGGCTTCAACAGCC
GTATCCTCACGCATGTGTACCCCATCCGTCTGGTCAAGGTCAACGAGGACACGATGGAGCCACT
GAGGGACTCCCAAGGCCTCTGCATCCCGTGCCAGCCCGGGGAACCTGGCCTTCTCGTGGGCCAG
ATCAACCAGCAAGACCCTCTGCGGCGCTTCGATGGCTATGTTAGTGACAGCGCCACCAACAAGA
AGATTGCCCACAGCGTGTTCCGAAAGGGGGACAGCGCCTACCTTTCAGGTGACGTGCTAGTGAT
GGACGAGCTGGGGTACATGTACTTCCGTGACCGCAGCGGGGATACCTTCCGATGGCGCGGCGAG
AACGTATCCACCACGGAGGTGGAAGCCGTGCTGAGCCGCCTGTTGGGCCAGACGGACGTGGCTG
TGTATGGAGTGGCTGTGCCAGGAGTGGAGGGGAAAGCCGGCATGGCGGCCATTGCAGACCCCCA
CAACCAGCTGGACCCTAACTCAATGTACCAGGAATTGCAGAAGGTTCTTGCATCCTATGCCCAG
CCCATCTTCCTGCGTCTTCTGCCCCAAGTGGATACAACAGGCACCTTCAAGATCCAGAAGACCC
GGCTACAGCGTGAAGGCTTTGACCCCCGCCAGACCTCAGACCGGCTCTTCTTTCTAGACCTGAA
ACAGGGACGCTACCTACCCCTGGATGAGAGAGTCCATGCCCGCATCTGCGCAGGCGACTTCTCA
CTCTGAGCCTGGTGAGTGGGATGGCCCTGGACTTGTGAGACCAGGGAGCCGGACACCCCTGTTC
AGGTGTTTCTCCTGCCTGGCCACGTGGCCAGCAGCACCTGTGGGTGCAGGAAACTGGAACCTGA
GTGGCCGGGTGTCCCTTTCCTACAACCCACTATGCACACATCTAGCCTCTGCCTTGGTCTTTTT
CTCCATCTCTTTCCTCCGTGCCCAGCAGGAGCCCCACAGACACATTGGCTGCTGTGTCCTGCAG
TGGGACCGGTGTCTAGGGGTCCATGCTGCAGGCTGTGACCCGCACTGGTGCCCACCTCCCTTCC
CCATTGTGCCTTAGGTTCCTCCACTGTTTGCCGGTGAAGCAAGTGGGGACCCACATAGCTGTTG
TCCCTGCTGAGGGTTGGTAGCAAATGCACCCTCATGTCAGCTGGGAGACACATGCAGTCTCCCA
CTGACCCCCAATCAACTGAAGATACTGTTTTGTATTATTGTTTTGAGATAGGGTCTCACTGTGG
AGGCCAAGCTGGCCTCAGGCTCACCACTCTACTGCCTCCGGGCACCAGCCTGCAGTTTGATGAC
ATGTATGCACTATTGTTCTAAGGGTCTTCTGAGTCCCTGCTTTCCCCTCATGTCCTAAAACCTT
CCAGAACTGACTCTGATCACTTGGATGTAGCTAGTGTTGGCCCTGCCCACGTGTGTCAATTCAG
GGGTCCCCAGGCATCATCTCTGGAGGCCCTAACCTTGGCAAAGCTTGGATGTCCTCACATCACA
GCAGGAGACCCAGGAAGGTTGCTGTGGTGTTCTCTTGGGCACCCCCTGGCGGCAGCCCTGGACA
TGCTTCCCTGCTGTGGATAGCCCAAACCGTTGCCTATGACATTTGAGGTCTACCCTTCTGGCTC
CCATGGTCCCCATTGAGATCTTTGGTGACTCACCTCAGCCACCAAGCCAGGCCTCTGCCTTCCT
TCAGCTCTAAGGGCATGAAGGGTGTGGACAGAGCAGCCACAGGCTGCCCACAGTCACCCACATG
CAAGTGTTATTTCCTTGTTTGTTTTAAAAAAATAAACATGCTGAGCCTTGAAAAAAAAAAAAAA
AAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006252953 ⟹ XP_006253015

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	18,280,507 - 18,296,064 (+)	NCBI
Rnor_6.0	16	20,000,567 - 20,016,193 (+)	NCBI
Rnor_5.0	16	19,859,540 - 19,880,871 (+)	NCBI

Sequence:

show sequence

CAGGCTTGGAGGGCTGAAGCTCAGGGGTGGAGCTTGGCCGTGGGAGTGTCTAACCACGTGGTCA
ATGCTTGGAGAGAAGAATCTGGCTTTGATGGGCGGAGGGCAAAGATTGAAGAAGTAGCCAATCC
CAGACCTTGAGGCGGGCAACGCTAAGTAAACTGGTTGAAATTGGCTTCCCTAGATAGAGCCTTG
CTCTGCGGCGGCGGGGCGGGGCCTGATGCCAAGGATGCGGACTCCGGGAGCAGGAACAGCCTCT
GTGGCCTCATTGGGGCTGCTTTGGCTTCTGGGACTTCCGTGGACCTGGAGCGCGGCGGCGGCGT
TCGGTGTGTACGTGGGTAGCGGTGGCTGGCGCTTTCTGCGTATCGTCTGCAAGACGGCGAGGCG
AGACCTCTTTGGCCTCTCTGTTCTGATCCGCGTGCGGCTAGAGCTACGACGACACCGGCGAGCA
GGAGACACGATCCCACGCATCTTCCAGGCCGTGGCCCAGCGACAGCCGGAGCGCCTGGCGCTGG
TAGATGCGAGTAGCGGTATCTGCTGGACCTTCGCACAGCTAGACACCTACTCCAATGCTGTGGC
CAATCTGTTCCTCCAGCTGGGCTTTGCGCCAGGCGATGTGGTGGCTGTGTTCCTGGAAGGCCGG
CCCGAGTTCGTGGGACTGTGGCTGGGCCTGGCCAAGGCCGGTGTAGTGGCTGCGCTTCTCAATG
TCAACCTGAGGCGGGAGCCCCTTGCCTTCTGCTTGGGCACATCAGCTGCCAAGGCCCTCATTTA
TGGCGGGGAGATGGCAGCGGCGGTGGCGGAGGTGAGTGAGCAGCTGGGGAAGAGCCTGCTCAAG
TTCTGCTCTGGAGATCTGGGGCCTGAGAGCGTCCTGCCTGACACGCAGCTTCTGGACCCCATGC
TTGCTGAGGCGCCCACCACACCCCTGGCACAGGCCCCAGGCAAGGGCATGGATGATCGGCTATT
TTACATCTATACTTCTGGGACCACCGGACTTCCTAAGGCGGCCATTGTGGTGCACAGCAGGTAC
TACCGCATTGCAGCCTTCGGCCACCATTCCTACAGCATGCGGGCCAACGATGTGCTCTATGACT
GCCTACCTCTCTACCACTCAGCAGGGAACATCATGGGCGTGGGACAGTGTATCATCTACGGGTT
AACGGTGGTACTGCGCAAGAAGTTCTCCGCCAGCCGCTTCTGGGACGACTGTGTCAAATATAAT
TGCACGGTAGTGCAGTACATCGGTGAAATATGCCGCTACCTGCTAAGGCAGCCGGTTCGCGATG
TAGAGCGGCGGCACCACGTGCGCCTGGCCGTGGGTAACGGACTGCGGCCAGCCATCTGGGAGGA
GTTCACGCAGCGTTTCGGTGTGCGACAGATTGGCGAGTTCTACGGCGCCACCGAGTGCAACTGC
AGCATTGCCAACATGGACGGCAAGGTCGGCTCCTGCGGCTTCAACAGCCGTATCCTCACGCATG
TGTACCCCATCCGTCTGGTCAAGGTCAACGAGGACACGATGGAGCCACTGAGGGACTCCCAAGG
CCTCTGCATCCCGTGCCAGCCCGGGGAACCTGGCCTTCTCGTGGGCCAGATCAACCAGCAAGAC
CCTCTGCGGCGCTTCGATGGCTATGTTAGTGACAGCGCCACCAACAAGAAGATTGCCCACAGCG
TGTTCCGAAAGGGGGACAGCGCCTACCTTTCAGGTGACGTGCTAGTGATGGACGAGCTGGGGTA
CATGTACTTCCGTGACCGCAGCGGGGATACCTTCCGATGGCGCGGCGAGAACGTATCCACCACG
GAGGTGGAAGCCGTGCTGAGCCGCCTGTTGGGCCAGACGGACGTGGCTGTGTATGGAGTGGCTG
TGCCAGGAGTGGAGGGGAAAGCCGGCATGGCGGCCATTGCAGACCCCCACAACCAGCTGGACCC
TAACTCAATGTACCAGGAATTGCAGAAGGTTCTTGCATCCTATGCCCAGCCCATCTTCCTGCGT
CTTCTGCCCCAAGTGGATACAACAGGCACCTTCAAGATCCAGAAGACCCGGCTACAGCGTGAAG
GCTTTGACCCCCGCCAGACCTCAGACCGGCTCTTCTTTCTAGACCTGAAACAGGGACGCTACCT
ACCCCTGGATGAGAGAGTCCATGCCCGCATCTGCGCAGGCGACTTCTCACTCTGAGCCTGGTGA
GTGGGATGGCCCTGGACTTGTGAGACCAGGGAGCCGGACACCCCTGTTCAGGTGTTTCTCCTGC
CTGGCCACGTGGCCAGCAGCACCTGTGGGTGCAGGAAACTGGAACCTGAGTGGCCGGGTGTCCC
TTTCCTACAACCCACTATGCACACATCTAGCCTCTGCCTTGGTCTTTTTCTCCATCTCTTTCCT
CCGTGCCCAGCAGGAGCCCCACAGACACATTGGCTGCTGTGTCCTGCAGTGGGACCGGTGTCTA
GGGGTCCATGCTGCAGGCTGTGACCCGCACTGGTGCCCACCTCCCTTCCCCATTGTGCCTTAGG
TTCCTCCACTGTTTGCCGGTGAAGCAAGTGGGGACCCACATAGCTGTTGTCCCTGCTGAGGGTT
GGTAGCAAATGCACCCTCATGTCAGCTGGGAGACACATGCAGTCTCCCACTGACCCCCAATCAA
CTGAAGATACTGTTTTGTATTATTGTTTTGAGATAGGGTCTCACTGTGGAGGCCAAGCTGGCCT
CAGGCTCACCACTCTACTGCCTCCGGGCACCAGCCTGCAGTTTGATGACATGTATGCACTATTG
TTCTAAGGGTCTTCTGAGTCCCTGCTTTCCCCTCATGTCCTAAAACCTTCCAGAACTGACTCTG
ATCACTTGGATGTAGCTAGTGTTGGCCCTGCCCACGTGTGTCAATTCAGGGGTCCCCAGGCATC
ATCTCTGGAGGCCCTAACCTTGGCAAAGCTTGGATGTCCTCACATCACAGCAGGAGACCCAGGA
AGGTTGCTGTGGTGTTCTCTTGGGCACCCCCTGGCGGCAGCCCTGGACATGCTTCCCTGCTGTG
GATAGCCCAAACCGTTGCCTATGACATTTGAGGTCTACCCTTCTGGCTCCCATGGTCCCCATTG
AGATCTTTGGTGACTCACCTCAGCCACCAAGCCAGGCCTCTGCCTTCCTTCAGCTCTAAGGGCA
TGAAGGGTGTGGACAGAGCAGCCACAGGCTGCCCACAGTCACCCACATGCAAGTGTTATTTCCT
TGTTTGTTTTAAAAAAATAAACATGCTGAGCCTTGACA

hide sequence

RefSeq Acc Id:

XM_006252954 ⟹ XP_006253016

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	18,279,786 - 18,296,064 (+)	NCBI
Rnor_6.0	16	19,999,914 - 20,016,191 (+)	NCBI
Rnor_5.0	16	19,859,540 - 19,880,871 (+)	NCBI

Sequence:

show sequence

TCCGGAAGGGGGTCGACTGGTGCGGAGCAGGGTTGCGGGGCGATAGGGTTTGGCGGTAGATTGG
AAGGTTTGGGGCGGAGCTAGGCGCTGGGTGAGCCGCACTGACCCGGCCTTTCCGTGAGCAGTGA
CTGACAAGACCTGGAGGCGGCGCGGGAGGCTCAGGATGCGGACTCCGGGAGCAGGAACAGCCTC
TGTGGCCTCATTGGGGCTGCTTTGGCTTCTGGGACTTCCGTGGACCTGGAGCGCGGCGGCGGCG
TTCGGTGTGTACGTGGGTAGCGGTGGCTGGCGCTTTCTGCGTATCGTCTGCAAGACGGCGAGGC
GAGACCTCTTTGGCCTCTCTGTTCTGATCCGCGTGCGGCTAGAGCTACGACGACACCGGCGAGC
AGGAGACACGATCCCACGCATCTTCCAGGCCGTGGCCCAGCGACAGCCGGAGCGCCTGGCGCTG
GTAGATGCGAGTAGCGGTATCTGCTGGACCTTCGCACAGCTAGACACCTACTCCAATGCTGTGG
CCAATCTGTTCCTCCAGCTGGGCTTTGCGCCAGGCGATGTGGTGGCTGTGTTCCTGGAAGGCCG
GCCCGAGTTCGTGGGACTGTGGCTGGGCCTGGCCAAGGCCGGTGTAGTGGCTGCGCTTCTCAAT
GTCAACCTGAGGCGGGAGCCCCTTGCCTTCTGCTTGGGCACATCAGCTGCCAAGGCCCTCATTT
ATGGCGGGGAGATGGCAGCGGCGGTGGCGGAGGTGAGTGAGCAGCTGGGGAAGAGCCTGCTCAA
GTTCTGCTCTGGAGATCTGGGGCCTGAGAGCGTCCTGCCTGACACGCAGCTTCTGGACCCCATG
CTTGCTGAGGCGCCCACCACACCCCTGGCACAGGCCCCAGGCAAGGGCATGGATGATCGGCTAT
TTTACATCTATACTTCTGGGACCACCGGACTTCCTAAGGCGGCCATTGTGGTGCACAGCAGGTA
CTACCGCATTGCAGCCTTCGGCCACCATTCCTACAGCATGCGGGCCAACGATGTGCTCTATGAC
TGCCTACCTCTCTACCACTCAGCAGGGAACATCATGGGCGTGGGACAGTGTATCATCTACGGGT
TAACGGTGGTACTGCGCAAGAAGTTCTCCGCCAGCCGCTTCTGGGACGACTGTGTCAAATATAA
TTGCACGGTAGTGCAGTACATCGGTGAAATATGCCGCTACCTGCTAAGGCAGCCGGTTCGCGAT
GTAGAGCGGCGGCACCACGTGCGCCTGGCCGTGGGTAACGGACTGCGGCCAGCCATCTGGGAGG
AGTTCACGCAGCGTTTCGGTGTGCGACAGATTGGCGAGTTCTACGGCGCCACCGAGTGCAACTG
CAGCATTGCCAACATGGACGGCAAGGTCGGCTCCTGCGGCTTCAACAGCCGTATCCTCACGCAT
GTGTACCCCATCCGTCTGGTCAAGGTCAACGAGGACACGATGGAGCCACTGAGGGACTCCCAAG
GCCTCTGCATCCCGTGCCAGCCCGGGGAACCTGGCCTTCTCGTGGGCCAGATCAACCAGCAAGA
CCCTCTGCGGCGCTTCGATGGCTATGTTAGTGACAGCGCCACCAACAAGAAGATTGCCCACAGC
GTGTTCCGAAAGGGGGACAGCGCCTACCTTTCAGGTGACGTGCTAGTGATGGACGAGCTGGGGT
ACATGTACTTCCGTGACCGCAGCGGGGATACCTTCCGATGGCGCGGCGAGAACGTATCCACCAC
GGAGGTGGAAGCCGTGCTGAGCCGCCTGTTGGGCCAGACGGACGTGGCTGTGTATGGAGTGGCT
GTGCCAGGAGTGGAGGGGAAAGCCGGCATGGCGGCCATTGCAGACCCCCACAACCAGCTGGACC
CTAACTCAATGTACCAGGAATTGCAGAAGGTTCTTGCATCCTATGCCCAGCCCATCTTCCTGCG
TCTTCTGCCCCAAGTGGATACAACAGGCACCTTCAAGATCCAGAAGACCCGGCTACAGCGTGAA
GGCTTTGACCCCCGCCAGACCTCAGACCGGCTCTTCTTTCTAGACCTGAAACAGGGACGCTACC
TACCCCTGGATGAGAGAGTCCATGCCCGCATCTGCGCAGGCGACTTCTCACTCTGAGCCTGGTG
AGTGGGATGGCCCTGGACTTGTGAGACCAGGGAGCCGGACACCCCTGTTCAGGTGTTTCTCCTG
CCTGGCCACGTGGCCAGCAGCACCTGTGGGTGCAGGAAACTGGAACCTGAGTGGCCGGGTGTCC
CTTTCCTACAACCCACTATGCACACATCTAGCCTCTGCCTTGGTCTTTTTCTCCATCTCTTTCC
TCCGTGCCCAGCAGGAGCCCCACAGACACATTGGCTGCTGTGTCCTGCAGTGGGACCGGTGTCT
AGGGGTCCATGCTGCAGGCTGTGACCCGCACTGGTGCCCACCTCCCTTCCCCATTGTGCCTTAG
GTTCCTCCACTGTTTGCCGGTGAAGCAAGTGGGGACCCACATAGCTGTTGTCCCTGCTGAGGGT
TGGTAGCAAATGCACCCTCATGTCAGCTGGGAGACACATGCAGTCTCCCACTGACCCCCAATCA
ACTGAAGATACTGTTTTGTATTATTGTTTTGAGATAGGGTCTCACTGTGGAGGCCAAGCTGGCC
TCAGGCTCACCACTCTACTGCCTCCGGGCACCAGCCTGCAGTTTGATGACATGTATGCACTATT
GTTCTAAGGGTCTTCTGAGTCCCTGCTTTCCCCTCATGTCCTAAAACCTTCCAGAACTGACTCT
GATCACTTGGATGTAGCTAGTGTTGGCCCTGCCCACGTGTGTCAATTCAGGGGTCCCCAGGCAT
CATCTCTGGAGGCCCTAACCTTGGCAAAGCTTGGATGTCCTCACATCACAGCAGGAGACCCAGG
AAGGTTGCTGTGGTGTTCTCTTGGGCACCCCCTGGCGGCAGCCCTGGACATGCTTCCCTGCTGT
GGATAGCCCAAACCGTTGCCTATGACATTTGAGGTCTACCCTTCTGGCTCCCATGGTCCCCATT
GAGATCTTTGGTGACTCACCTCAGCCACCAAGCCAGGCCTCTGCCTTCCTTCAGCTCTAAGGGC
ATGAAGGGTGTGGACAGAGCAGCCACAGGCTGCCCACAGTCACCCACATGCAAGTGTTATTTCC
TTGTTTGTTTTAAAAAAATAAACATGCTGAGCCTTGA

hide sequence

RefSeq Acc Id:

XM_008771156 ⟹ XP_008769378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	18,280,393 - 18,300,173 (+)	NCBI
Rnor_6.0	16	20,000,414 - 20,016,193 (+)	NCBI

Sequence:

show sequence

GGGGATAGATAGAACACCCATCCTCTGATGCTAGATAAGCATGAGGATAGCGTGTGAATTTTGA
GACTCAGAGGAGGGATAAGGTGACATTAGGGCATGGCCTGGACCATTTGCAGCGTAGGGCCTAG
GATGCGGACTCCGGGAGCAGGAACAGCCTCTGTGGCCTCATTGGGGCTGCTTTGGCTTCTGGGA
CTTCCGTGGACCTGGAGCGCGGCGGCGGCGTTCGGTGTGTACGTGGGTAGCGGTGGCTGGCGCT
TTCTGCGTATCGTCTGCAAGACGGCGAGGCGAGACCTCTTTGGCCTCTCTGTTCTGATCCGCGT
GCGGCTAGAGCTACGACGACACCGGCGAGCAGGAGACACGATCCCACGCATCTTCCAGGCCGTG
GCCCAGCGACAGCCGGAGCGCCTGGCGCTGGTAGATGCGAGTAGCGGTATCTGCTGGACCTTCG
CACAGCTAGACACCTACTCCAATGCTGTGGCCAATCTGTTCCTCCAGCTGGGCTTTGCGCCAGG
CGATGTGGTGGCTGTGTTCCTGGAAGGCCGGCCCGAGTTCGTGGGACTGTGGCTGGGCCTGGCC
AAGGCCGGTGTAGTGGCTGCGCTTCTCAATGTCAACCTGAGGCGGGAGCCCCTTGCCTTCTGCT
TGGGCACATCAGCTGCCAAGGCCCTCATTTATGGCGGGGAGATGGCAGCGGCGGTGGCGGAGGT
GAGTGAGCAGCTGGGGAAGAGCCTGCTCAAGTTCTGCTCTGGAGATCTGGGGCCTGAGAGCGTC
CTGCCTGACACGCAGCTTCTGGACCCCATGCTTGCTGAGGCGCCCACCACACCCCTGGCACAGG
CCCCAGGCAAGGGCATGGATGATCGGCTATTTTACATCTATACTTCTGGGACCACCGGACTTCC
TAAGGCGGCCATTGTGGTGCACAGCAGGTACTACCGCATTGCAGCCTTCGGCCACCATTCCTAC
AGCATGCGGGCCAACGATGTGCTCTATGACTGCCTACCTCTCTACCACTCAGCAGGGAACATCA
TGGGCGTGGGACAGTGTATCATCTACGGGTTAACGGTGGTACTGCGCAAGAAGTTCTCCGCCAG
CCGCTTCTGGGACGACTGTGTCAAATATAATTGCACGGTAGTGCAGTACATCGGTGAAATATGC
CGCTACCTGCTAAGGCAGCCGGTTCGCGATGTAGAGCGGCGGCACCACGTGCGCCTGGCCGTGG
GTAACGGACTGCGGCCAGCCATCTGGGAGGAGTTCACGCAGCGTTTCGGTGTGCGACAGATTGG
CGAGTTCTACGGCGCCACCGAGTGCAACTGCAGCATTGCCAACATGGACGGCAAGGTCGGCTCC
TGCGGCTTCAACAGCCGTATCCTCACGCATGTGTACCCCATCCGTCTGGTCAAGGTCAACGAGG
ACACGATGGAGCCACTGAGGGACTCCCAAGGCCTCTGCATCCCGTGCCAGCCCGGGGAACCTGG
CCTTCTCGTGGGCCAGATCAACCAGCAAGACCCTCTGCGGCGCTTCGATGGCTATGTTAGTGAC
AGCGCCACCAACAAGAAGATTGCCCACAGCGTGTTCCGAAAGGGGGACAGCGCCTACCTTTCAG
GTGACGTGCTAGTGATGGACGAGCTGGGGTACATGTACTTCCGTGACCGCAGCGGGGATACCTT
CCGATGGCGCGGCGAGAACGTATCCACCACGGAGGTGGAAGCCGTGCTGAGCCGCCTGTTGGGC
CAGACGGACGTGGCTGTGTATGGAGTGGCTGTGCCAGGAGTGGAGGGGAAAGCCGGCATGGCGG
CCATTGCAGACCCCCACAACCAGCTGGACCCTAACTCAATGTACCAGGAATTGCAGAAGGTTCT
TGCATCCTATGCCCAGCCCATCTTCCTGCGTCTTCTGCCCCAAGTGGATACAACAGGCACCTTC
AAGATCCAGAAGACCCGGCTACAGCGTGAAGGCTTTGACCCCCGCCAGACCTCAGACCGGCTCT
TCTTTCTAGACCTGAAACAGGGACGCTACCTACCCCTGGATGAGAGAGTCCATGCCCGCATCTG
CGCAGGCGACTTCTCACTCTGAGCCTGGTGAGTGGGATGGCCCTGGACTTGTGAGACCAGGGAG
CCGGACACCCCTGTTCAGGTGTTTCTCCTGCCTGGCCACGTGGCCAGCAGCACCTGTGGGTGCA
GGAAACTGGAACCTGAGTGGCCGGGTGTCCCTTTCCTACAACCCACTATGCACACATCTAGCCT
CTGCCTTGGTCTTTTTCTCCATCTCTTTCCTCCGTGCCCAGCAGGAGCCCCACAGACACATTGG
CTGCTGTGTCCTGCAGTGGGACCGGTGTCTAGGGGTCCATGCTGCAGGCTGTGACCCGCACTGG
TGCCCACCTCCCTTCCCCATTGTGCCTTAGGTTCCTCCACTGTTTGCCGGTGAAGCAAGTGGGG
ACCCACATAGCTGTTGTCCCTGCTGAGGGTTGGTAGCAAATGCACCCTCATGTCAGCTGGGAGA
CACATGCAGTCTCCCACTGACCCCCAATCAACTGAAGATACTGTTTTGTATTATTGTTTTGAGA
TAGGGTCTCACTGTGGAGGCCAAGCTGGCCTCAGGCTCACCACTCTACTGCCTCCGGGCACCAG
CCTGCAGTTTGATGACATGTATGCACTATTGTTCTAAGGGTCTTCTGAGTCCCTGCTTTCCCCT
CATGTCCTAAAACCTTCCAGAACTGACTCTGATCACTTGGATGTAGCTAGTGTTGGCCCTGCCC
ACGTGTGTCAATTCAGGGGTCCCCAGGCATCATCTCTGGAGGCCCTAACCTTGGCAAAGCTTGG
ATGTCCTCACATCACAGCAGGAGACCCAGGAAGGTTGCTGTGGTGTTCTCTTGGGCACCCCCTG
GCGGCAGCCCTGGACATGCTTCCCTGCTGTGGATAGCCCAAACCGTTGCCTATGACATTTGAGG
TCTACCCTTCTGGCTCCCATGGTCCCCATTGAGATCTTTGGTGACTCACCTCAGCCACCAAGCC
AGGCCTCTGCCTTCCTTCAGCTCTAAGGGCATGAAGGGTGTGGACAGAGCAGCCACAGGCTGCC
CACAGTCACCCACATGCAAGTGTTATTTCCTTGTTTGTTTTAAAAAAATAAACATGCTGAGCCT
TGACA

hide sequence

RefSeq Acc Id:

XM_039094877 ⟹ XP_038950805

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	18,280,393 - 18,296,705 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_446032	(Get FASTA)	NCBI Sequence Viewer
	XP_006253015	(Get FASTA)	NCBI Sequence Viewer
	XP_006253016	(Get FASTA)	NCBI Sequence Viewer
	XP_008769378	(Get FASTA)	NCBI Sequence Viewer
	XP_038950805	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC53424	(Get FASTA)	NCBI Sequence Viewer
	AAH74014	(Get FASTA)	NCBI Sequence Viewer
	EDL90773	(Get FASTA)	NCBI Sequence Viewer
	EDL90774	(Get FASTA)	NCBI Sequence Viewer
	EDL90775	(Get FASTA)	NCBI Sequence Viewer
	EDL90776	(Get FASTA)	NCBI Sequence Viewer
	P97849	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_446032 ⟸ NM_053580

- UniProtKB:

P97849 (UniProtKB/Swiss-Prot), Q6GMM8 (UniProtKB/TrEMBL), F7EPC1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRTPGAGTASVASLGLLWLLGLPWTWSAAAAFGVYVGSGGWRFLRIVCKTARRDLFGLSVLIRV
RLELRRHRRAGDTIPRIFQAVAQRQPERLALVDASSGICWTFAQLDTYSNAVANLFLQLGFAPG
DVVAVFLEGRPEFVGLWLGLAKAGVVAALLNVNLRREPLAFCLGTSAAKALIYGGEMAAAVAEV
SEQLGKSLLKFCSGDLGPESVLPDTQLLDPMLAEAPTTPLAQAPGKGMDDRLFYIYTSGTTGLP
KAAIVVHSRYYRIAAFGHHSYSMRANDVLYDCLPLYHSAGNIMGVGQCIIYGLTVVLRKKFSAS
RFWDDCVKYNCTVVQYIGEICRYLLRQPVRDVERRHHVRLAVGNGLRPAIWEEFTQRFGVRQIG
EFYGATECNCSIANMDGKVGSCGFNSRILTHVYPIRLVKVNEDTMEPLRDSQGLCIPCQPGEPG
LLVGQINQQDPLRRFDGYVSDSATNKKIAHSVFRKGDSAYLSGDVLVMDELGYMYFRDRSGDTF
RWRGENVSTTEVEAVLSRLLGQTDVAVYGVAVPGVEGKAGMAAIADPHNQLDPNSMYQELQKVL
ASYAQPIFLRLLPQVDTTGTFKIQKTRLQREGFDPRQTSDRLFFLDLKQGRYLPLDERVHARIC
AGDFSL

hide sequence

RefSeq Acc Id:	XP_006253016 ⟸ XM_006252954
- Peptide Label:	isoform X1
- UniProtKB:	P97849 (UniProtKB/Swiss-Prot), Q6GMM8 (UniProtKB/TrEMBL), F7EPC1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRTPGAGTASVASLGLLWLLGLPWTWSAAAAFGVYVGSGGWRFLRIVCKTARRDLFGLSVLIRV RLELRRHRRAGDTIPRIFQAVAQRQPERLALVDASSGICWTFAQLDTYSNAVANLFLQLGFAPG DVVAVFLEGRPEFVGLWLGLAKAGVVAALLNVNLRREPLAFCLGTSAAKALIYGGEMAAAVAEV SEQLGKSLLKFCSGDLGPESVLPDTQLLDPMLAEAPTTPLAQAPGKGMDDRLFYIYTSGTTGLP KAAIVVHSRYYRIAAFGHHSYSMRANDVLYDCLPLYHSAGNIMGVGQCIIYGLTVVLRKKFSAS RFWDDCVKYNCTVVQYIGEICRYLLRQPVRDVERRHHVRLAVGNGLRPAIWEEFTQRFGVRQIG EFYGATECNCSIANMDGKVGSCGFNSRILTHVYPIRLVKVNEDTMEPLRDSQGLCIPCQPGEPG LLVGQINQQDPLRRFDGYVSDSATNKKIAHSVFRKGDSAYLSGDVLVMDELGYMYFRDRSGDTF RWRGENVSTTEVEAVLSRLLGQTDVAVYGVAVPGVEGKAGMAAIADPHNQLDPNSMYQELQKVL ASYAQPIFLRLLPQVDTTGTFKIQKTRLQREGFDPRQTSDRLFFLDLKQGRYLPLDERVHARIC AGDFSL hide sequence

RefSeq Acc Id:	XP_006253015 ⟸ XM_006252953
- Peptide Label:	isoform X2
- UniProtKB:	P97849 (UniProtKB/Swiss-Prot), A0A8I5YCE2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRMRTPGAGTASVASLGLLWLLGLPWTWSAAAAFGVYVGSGGWRFLRIVCKTARRDLFGLSVL IRVRLELRRHRRAGDTIPRIFQAVAQRQPERLALVDASSGICWTFAQLDTYSNAVANLFLQLGF APGDVVAVFLEGRPEFVGLWLGLAKAGVVAALLNVNLRREPLAFCLGTSAAKALIYGGEMAAAV AEVSEQLGKSLLKFCSGDLGPESVLPDTQLLDPMLAEAPTTPLAQAPGKGMDDRLFYIYTSGTT GLPKAAIVVHSRYYRIAAFGHHSYSMRANDVLYDCLPLYHSAGNIMGVGQCIIYGLTVVLRKKF SASRFWDDCVKYNCTVVQYIGEICRYLLRQPVRDVERRHHVRLAVGNGLRPAIWEEFTQRFGVR QIGEFYGATECNCSIANMDGKVGSCGFNSRILTHVYPIRLVKVNEDTMEPLRDSQGLCIPCQPG EPGLLVGQINQQDPLRRFDGYVSDSATNKKIAHSVFRKGDSAYLSGDVLVMDELGYMYFRDRSG DTFRWRGENVSTTEVEAVLSRLLGQTDVAVYGVAVPGVEGKAGMAAIADPHNQLDPNSMYQELQ KVLASYAQPIFLRLLPQVDTTGTFKIQKTRLQREGFDPRQTSDRLFFLDLKQGRYLPLDERVHA RICAGDFSL hide sequence

RefSeq Acc Id:	XP_008769378 ⟸ XM_008771156
- Peptide Label:	isoform X1
- UniProtKB:	P97849 (UniProtKB/Swiss-Prot), Q6GMM8 (UniProtKB/TrEMBL), F7EPC1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAWTICSVGPRMRTPGAGTASVASLGLLWLLGLPWTWSAAAAFGVYVGSGGWRFLRIVCKTARR DLFGLSVLIRVRLELRRHRRAGDTIPRIFQAVAQRQPERLALVDASSGICWTFAQLDTYSNAVA NLFLQLGFAPGDVVAVFLEGRPEFVGLWLGLAKAGVVAALLNVNLRREPLAFCLGTSAAKALIY GGEMAAAVAEVSEQLGKSLLKFCSGDLGPESVLPDTQLLDPMLAEAPTTPLAQAPGKGMDDRLF YIYTSGTTGLPKAAIVVHSRYYRIAAFGHHSYSMRANDVLYDCLPLYHSAGNIMGVGQCIIYGL TVVLRKKFSASRFWDDCVKYNCTVVQYIGEICRYLLRQPVRDVERRHHVRLAVGNGLRPAIWEE FTQRFGVRQIGEFYGATECNCSIANMDGKVGSCGFNSRILTHVYPIRLVKVNEDTMEPLRDSQG LCIPCQPGEPGLLVGQINQQDPLRRFDGYVSDSATNKKIAHSVFRKGDSAYLSGDVLVMDELGY MYFRDRSGDTFRWRGENVSTTEVEAVLSRLLGQTDVAVYGVAVPGVEGKAGMAAIADPHNQLDP NSMYQELQKVLASYAQPIFLRLLPQVDTTGTFKIQKTRLQREGFDPRQTSDRLFFLDLKQGRYL PLDERVHARICAGDFSL hide sequence

RefSeq Acc Id:

ENSRNOP00000024659 ⟸ ENSRNOT00000024659

RefSeq Acc Id:	XP_038950805 ⟸ XM_039094877
- Peptide Label:	isoform X1
- UniProtKB:	P97849 (UniProtKB/Swiss-Prot), Q6GMM8 (UniProtKB/TrEMBL), F7EPC1 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000083160 ⟸ ENSRNOT00000101879

RefSeq Acc Id:

ENSRNOP00000077487 ⟸ ENSRNOT00000095535

Protein Domains

AMP-binding enzyme C-terminal AMP-dependent synthetase/ligase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P97849-F1-model_v2	AlphaFold	P97849	1-646	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620927	AgrOrtholog
BioCyc Gene	G2FUF-11838	BioCyc
Ensembl Genes	ENSRNOG00000018170	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000024659	ENTREZGENE
	ENSRNOP00000024659.3	UniProtKB/TrEMBL
	ENSRNOP00000077487	ENTREZGENE
	ENSRNOP00000077487.1	UniProtKB/TrEMBL
	ENSRNOP00000083160	ENTREZGENE
	ENSRNOP00000083160.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000024659	ENTREZGENE
	ENSRNOT00000024659.5	UniProtKB/TrEMBL
	ENSRNOT00000095535	ENTREZGENE
	ENSRNOT00000095535.1	UniProtKB/TrEMBL
	ENSRNOT00000101879	ENTREZGENE
	ENSRNOT00000101879.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.300.30	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.40.50.12780	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7104661	IMAGE-MGC_LOAD
InterPro	AMP-bd_C	UniProtKB/TrEMBL
	AMP-bd_C_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	AMP-binding_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	AMP-dep_Synth/Lig	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	AMP-dep_Synthh-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:94172	UniProtKB/TrEMBL
MGC_CLONE	MGC:91570	IMAGE-MGC_LOAD
NCBI Gene	94172	ENTREZGENE
PANTHER	LONG-CHAIN FATTY ACID TRANSPORT PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR43107:SF7	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	AMP-binding	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	AMP-binding_C	UniProtKB/TrEMBL
PhenoGen	Slc27a1	PhenoGen
PROSITE	AMP_BINDING	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Acetyl-CoA synthetase-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5YCE2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G8J5_RAT	UniProtKB/TrEMBL
	A6K9W3_RAT	UniProtKB/TrEMBL
	A6K9W4_RAT	UniProtKB/TrEMBL
	F7EPC1	ENTREZGENE, UniProtKB/TrEMBL
	P97849	ENTREZGENE
	Q6GMM8	ENTREZGENE, UniProtKB/TrEMBL
	S27A1_RAT	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc27a1	solute carrier family 27 member 1	Slc27a1	solute carrier family 27 (fatty acid transporter), member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Slc27a1	solute carrier family 27 (fatty acid transporter), member 1		fatty acid transport protein	Name updated	1299863	APPROVED
2002-08-07	Slc27a1	fatty acid transport protein			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_process	involved in myocardial fatty acid utilization	730038

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)