Slc27a1 (solute carrier family 27 member 1) - Rat Genome Database

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Gene: Slc27a1 (solute carrier family 27 member 1) Heterocephalus glaber
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Symbol: Slc27a1
Name: solute carrier family 27 member 1
RGD ID: 18910164
Description: ENCODES a protein that exhibits biotin transmembrane transporter activity (ortholog); efflux transmembrane transporter activity (ortholog); fatty acid transmembrane transporter activity (ortholog); INVOLVED IN adiponectin-activated signaling pathway (ortholog); biotin import across plasma membrane (ortholog); biotin transport (ortholog); ASSOCIATED WITH familial hyperlipidemia (ortholog); glucose intolerance (ortholog); hyperinsulinism (ortholog); FOUND IN basal plasma membrane (ortholog); caveola (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: long-chain fatty acid transport protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908531,308 - 549,990 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908531,313 - 549,570 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slc27a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908531,308 - 549,990 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908531,313 - 549,570 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC27A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,468,767 - 17,506,168 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,468,769 - 17,506,168 (+)EnsemblGRCh38hg38GRCh38
GRCh371917,581,333 - 17,616,977 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,442,300 - 17,477,977 (+)NCBINCBI36Build 36hg18NCBI36
Celera1917,482,907 - 17,518,593 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1917,146,725 - 17,182,058 (+)NCBIHuRef
CHM1_11917,580,668 - 17,616,359 (+)NCBICHM1_1
T2T-CHM13v2.01917,602,871 - 17,640,805 (+)NCBIT2T-CHM13v2.0
Slc27a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,021,372 - 72,039,951 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl872,021,526 - 72,039,946 (+)EnsemblGRCm39 Ensembl
GRCm38871,568,728 - 71,587,307 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,568,882 - 71,587,302 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,092,826 - 74,110,607 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36874,497,916 - 74,515,697 (+)NCBIMGSCv36mm8
Celera874,083,284 - 74,101,015 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.43NCBI
Slc27a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,311,859 - 18,337,024 (+)NCBIGRCr8
mRatBN7.21618,278,984 - 18,300,173 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,278,984 - 18,296,063 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,329,890 - 18,346,962 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,461,772 - 19,478,909 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,382,827 - 18,399,900 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,997,823 - 20,016,193 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,999,112 - 20,016,190 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,859,540 - 19,880,871 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,769,909 - 18,786,988 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11618,769,906 - 18,786,985 (+)NCBI
Celera1618,482,929 - 18,499,970 (+)NCBICelera
Cytogenetic Map16p14NCBI
Slc27a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955524805,014 - 821,838 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955524803,793 - 821,920 (-)NCBIChiLan1.0ChiLan1.0
SLC27A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22022,340,328 - 22,376,533 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11921,345,812 - 21,383,151 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01916,956,000 - 16,993,429 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11917,929,785 - 17,966,171 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1917,929,785 - 17,966,171 (+)Ensemblpanpan1.1panPan2
SLC27A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,309,094 - 45,341,101 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,310,088 - 45,340,230 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,223,163 - 45,255,236 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,796,156 - 45,828,264 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,796,156 - 45,829,217 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12045,032,656 - 45,064,717 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,442,740 - 45,474,725 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,718,788 - 45,750,750 (-)NCBIUU_Cfam_GSD_1.0
Slc27a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,877,674 - 203,901,327 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,427,874 - 3,449,489 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,426,807 - 3,451,259 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC27A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,203,388 - 60,235,588 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,203,374 - 60,235,689 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,752,658 - 59,771,672 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC27A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,967,126 - 15,995,039 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660743,430,291 - 3,458,931 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000004503   ⟹   ENSHGLP00000004441
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624908531,308 - 549,990 (-)Ensembl
RefSeq Acc Id: XM_004873219   ⟹   XP_004873276
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624908531,313 - 548,517 (-)NCBI
RefSeq Acc Id: XM_013068674   ⟹   XP_012924128
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624908531,313 - 549,290 (-)NCBI
RefSeq Acc Id: XM_013068675   ⟹   XP_012924129
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624908531,313 - 548,711 (-)NCBI
RefSeq Acc Id: XM_013068676   ⟹   XP_012924130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624908531,313 - 548,897 (-)NCBI
RefSeq Acc Id: XM_013068677   ⟹   XP_012924131
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624908531,313 - 549,570 (-)NCBI
RefSeq Acc Id: XM_021251079   ⟹   XP_021106738
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624908531,313 - 548,518 (-)NCBI
RefSeq Acc Id: XP_012924131   ⟸   XM_013068677
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012924128   ⟸   XM_013068674
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012924130   ⟸   XM_013068676
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012924129   ⟸   XM_013068675
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021106738   ⟸   XM_021251079
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004873276   ⟸   XM_004873219
- Peptide Label: isoform X1
Ensembl Acc Id: ENSHGLP00000004441   ⟸   ENSHGLT00000004503


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003247 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004503 ENTREZGENE
NCBI Gene Slc27a1 ENTREZGENE