Slc27a1 (solute carrier family 27 member 1) - Rat Genome Database

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Gene: Slc27a1 (solute carrier family 27 member 1) Heterocephalus glaber
Analyze
Symbol: Slc27a1
Name: solute carrier family 27 member 1
RGD ID: 18910164
Description: ENCODES a protein that exhibits biotin transmembrane transporter activity (ortholog); efflux transmembrane transporter activity (ortholog); icosanoid transmembrane transporter activity (ortholog); INVOLVED IN adiponectin-activated signaling pathway (ortholog); biotin import across plasma membrane (ortholog); biotin transport (ortholog); ASSOCIATED WITH familial hyperlipidemia (ortholog); glucose intolerance (ortholog); hyperinsulinism (ortholog); FOUND IN basal plasma membrane (ortholog); caveola (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: long-chain fatty acid transport protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908531,308 - 549,990 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908531,313 - 549,570 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc27a1Naked Mole-Ratfamilial hyperlipidemia  ISORGD:6209279068941protein:increased expression:soleus muscle, protein:decreased expression:gastrocnemius muscleRGDPMID:15281014|REF_RGD_ID:1642794
Slc27a1Naked Mole-Ratglucose intolerance  ISORGD:6209279068941protein:increased expression:soleus muscle, protein:decreased expression:gastrocnemius muscleRGDPMID:15281014|REF_RGD_ID:1642794
Slc27a1Naked Mole-Rathyperinsulinism  ISORGD:6209279068941protein:increased expression:soleus muscle, protein:decreased expression:gastrocnemius muscleRGDPMID:15281014|REF_RGD_ID:1642794
Slc27a1Naked Mole-RatInsulin Resistance  ISORGD:6209279068941protein::heart:basal level increased but unresponsive to insulin on a high cholesterol, high fructose dietRGDPMID:17400720|REF_RGD_ID:1642795
Slc27a1Naked Mole-RatMetabolic Syndrome susceptibilityISORGD:15531689068941DNA:gene knockout::Slc27a1-/- mice resistant to diet-induced obesity and metabolic syndromeRGDPMID:16611988|REF_RGD_ID:1642790
Slc27a1Naked Mole-Ratmyocardial infarction  ISORGD:6209279068941protein:decreased expression:infarcted heartRGDPMID:17034771|REF_RGD_ID:1642800
Slc27a1Naked Mole-Ratobesity  ISORGD:6209279068941protein:increased expression:soleus muscle, protein:decreased expression:gastrocnemius muscleRGDPMID:15281014|REF_RGD_ID:1642794
Slc27a1Naked Mole-Ratobesity susceptibilityISORGD:15531689068941DNA:gene knockout::Slc27a1-/- mice resistant to diet-induced obesity and metabolic syndromeRGDPMID:16611988|REF_RGD_ID:1642790


Biological Process
1 to 20 of 24 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc27a1Naked Mole-Ratadiponectin-activated signaling pathway acts_upstream_of_or_withinISORGD:15531689068941 PMID:20667975MGIPMID:20667975
Slc27a1Naked Mole-Ratbiotin import across plasma membrane involved_inISORGD:16049409068941 PMID:28035674ARUK-UCLPMID:28035674
Slc27a1Naked Mole-Ratbiotin transport involved_inISORGD:16049409068941 PMID:28035674ARUK-UCLPMID:28035674
Slc27a1Naked Mole-Ratexport across plasma membrane involved_inISORGD:16049409068941 PMID:28035674ARUK-UCLPMID:28035674
Slc27a1Naked Mole-Ratexport across plasma membrane involved_inISORGD:16049409068941 PMID:31091338ARUK-UCLPMID:31091338
Slc27a1Naked Mole-Ratfatty acid metabolic process involved_inIEAUniProtKB-KW:KW-0276150520179 UniProtGO_REF:0000043
Slc27a1Naked Mole-Ratfatty acid transport acts_upstream_of_or_withinISORGD:15531689068941 PMID:12533547, PMID:9671728MGIPMID:12533547|PMID:9671728
Slc27a1Naked Mole-Ratfatty acid transport acts_upstream_of_or_withinISOMGI:30387019068941 PMID:17130465MGIPMID:17130465
Slc27a1Naked Mole-Ratglucose import in response to insulin stimulus involved_inISORGD:15531689068941 PMID:23024797ARUK-UCLPMID:23024797
Slc27a1Naked Mole-Ratlipid metabolic process involved_inIEAUniProtKB-KW:KW-0443150520179 UniProtGO_REF:0000043
Slc27a1Naked Mole-Ratlipid transport involved_inIEAUniProtKB-KW:KW-0445150520179 UniProtGO_REF:0000043
Slc27a1Naked Mole-Ratlipid transport across blood-brain barrier involved_inISORGD:16049409068941 PMID:21395585ARUK-UCLPMID:21395585
Slc27a1Naked Mole-Ratlong-chain fatty acid import across plasma membrane involved_inISORGD:16049409068941 PMID:28035674ARUK-UCLPMID:28035674
Slc27a1Naked Mole-Ratlong-chain fatty acid import into cell involved_inIEAPANTHER:PTN000645430150520179 TreeGrafterGO_REF:0000118
Slc27a1Naked Mole-Ratlong-chain fatty acid metabolic process involved_inIEAPANTHER:PTN000645430150520179 TreeGrafterGO_REF:0000118
Slc27a1Naked Mole-Ratlong-chain fatty acid transport involved_inISORGD:16049409068941 PMID:28035674ARUK-UCLPMID:28035674
Slc27a1Naked Mole-Ratlong-chain fatty acid transport acts_upstream_of_or_withinISOMGI:30387019068941 PMID:16611988MGIPMID:16611988
Slc27a1Naked Mole-Ratlong-chain fatty acid transport involved_inISORGD:16049409068941 PMID:21395585, PMID:31091338ARUK-UCLPMID:21395585|PMID:31091338
Slc27a1Naked Mole-Ratmedium-chain fatty acid transport acts_upstream_of_or_withinISOSGD:S000000245|SGD:S0000058449068941 PMID:18258213MGIPMID:18258213
Slc27a1Naked Mole-Ratmedium-chain fatty acid transport involved_inIEAPANTHER:PTN000645430150520179 TreeGrafterGO_REF:0000118
1 to 20 of 24 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc27a1Naked Mole-Ratbasal plasma membrane located_inISORGD:15531689068941 PMID:28035674ARUK-UCLPMID:28035674
Slc27a1Naked Mole-Ratcaveola  ISORGD:6209279068941adipocytesRGDPMID:16803459|REF_RGD_ID:1642797
Slc27a1Naked Mole-Ratendoplasmic reticulum located_inISORGD:15531689068941 PMID:23024797ARUK-UCLPMID:23024797
Slc27a1Naked Mole-Ratendoplasmic reticulum located_inISORGD:15531689068941 PMID:15496455MGIPMID:15496455
Slc27a1Naked Mole-Ratendoplasmic reticulum membrane located_inIEAPANTHER:PTN000645430150520179 TreeGrafterGO_REF:0000118
Slc27a1Naked Mole-Ratmitochondrial inner membrane located_inIEAPANTHER:PTN000645430150520179 TreeGrafterGO_REF:0000118
Slc27a1Naked Mole-Ratplasma membrane located_inIEAPANTHER:PTN000645430150520179 TreeGrafterGO_REF:0000118

Molecular Function
1 to 19 of 19 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc27a1Naked Mole-Ratbiotin transmembrane transporter activity enablesISORGD:16049409068941 PMID:28035674ARUK-UCLPMID:28035674
Slc27a1Naked Mole-Ratefflux transmembrane transporter activity enablesISORGD:16049409068941 PMID:31091338ARUK-UCLPMID:31091338
Slc27a1Naked Mole-Ratefflux transmembrane transporter activity enablesISORGD:16049409068941 PMID:28035674ARUK-UCLPMID:28035674
Slc27a1Naked Mole-Ratfatty acid transmembrane transporter activity enablesIEAPANTHER:PTN000645430150520179 TreeGrafterGO_REF:0000118
Slc27a1Naked Mole-Raticosanoid transmembrane transporter activity enablesISORGD:15531689068941 PMID:7954810ReactomePMID:7954810
Slc27a1Naked Mole-Ratidentical protein binding enablesISOPR:Q607149068941 PMID:12566451MGIPMID:12566451
Slc27a1Naked Mole-Ratligase activity enablesIEAUniProtKB-KW:KW-0436150520179 UniProtGO_REF:0000043
Slc27a1Naked Mole-Ratlong-chain fatty acid transmembrane transporter activity enablesIEAPANTHER:PTN000645430150520179 TreeGrafterGO_REF:0000118
Slc27a1Naked Mole-Ratlong-chain fatty acid-CoA ligase activity enablesIEAPANTHER:PTN000645430150520179 TreeGrafterGO_REF:0000118
Slc27a1Naked Mole-Ratoleoyl-CoA ligase activity enablesIEAPANTHER:PTN000645430150520179 TreeGrafterGO_REF:0000118
Slc27a1Naked Mole-Ratprotein binding enablesISOUniProtKB:Q8CGC79068941 PMID:28178239UniProtPMID:28178239
Slc27a1Naked Mole-Ratprotein binding  ISORGD:23979068941 RGDPMID:19429947|REF_RGD_ID:2312787
Slc27a1Naked Mole-Ratprotein binding enablesISOUniProtKB:Q96PD79068941 PMID:30970241UniProtPMID:30970241
Slc27a1Naked Mole-Ratprotein binding  ISORGD:23969068941 RGDPMID:19429947|REF_RGD_ID:2312787
Slc27a1Naked Mole-Ratprotein binding enablesISOUniProtKB:P078149068941 PMID:28178239UniProtPMID:28178239
Slc27a1Naked Mole-Ratprotein serine/threonine kinase activator activity enablesISORGD:15531689068941 PMID:19560442MGIPMID:19560442
Slc27a1Naked Mole-Ratprotein serine/threonine kinase activator activity enablesISOMGI:1066759068941 PMID:20667975MGIPMID:20667975
Slc27a1Naked Mole-Ratvery long-chain fatty acid-CoA ligase activity enablesISORGD:15531689068941 PMID:10593920UniProtPMID:10593920
Slc27a1Naked Mole-Ratvery long-chain fatty acid-CoA ligase activity enablesISORGD:15531689068941 PMID:18258213MGIPMID:18258213
1 to 19 of 19 rows

PMID:30032202  



Slc27a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908531,308 - 549,990 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908531,313 - 549,570 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC27A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,468,767 - 17,506,168 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,468,769 - 17,506,168 (+)EnsemblGRCh38hg38GRCh38
GRCh371917,581,333 - 17,616,977 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,442,300 - 17,477,977 (+)NCBINCBI36Build 36hg18NCBI36
Celera1917,482,907 - 17,518,593 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1917,146,725 - 17,182,058 (+)NCBIHuRef
CHM1_11917,580,668 - 17,616,359 (+)NCBICHM1_1
T2T-CHM13v2.01917,602,871 - 17,640,805 (+)NCBIT2T-CHM13v2.0
Slc27a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,021,372 - 72,039,951 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl872,021,526 - 72,039,946 (+)EnsemblGRCm39 Ensembl
GRCm38871,568,728 - 71,587,307 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,568,882 - 71,587,302 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,092,826 - 74,110,607 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36874,497,916 - 74,515,697 (+)NCBIMGSCv36mm8
Celera874,083,284 - 74,101,015 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.43NCBI
Slc27a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,311,859 - 18,337,024 (+)NCBIGRCr8
mRatBN7.21618,278,984 - 18,300,173 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,278,984 - 18,296,063 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,329,890 - 18,346,962 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,461,772 - 19,478,909 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,382,827 - 18,399,900 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,997,823 - 20,016,193 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,999,112 - 20,016,190 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,859,540 - 19,880,871 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,769,909 - 18,786,988 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11618,769,906 - 18,786,985 (+)NCBI
Celera1618,482,929 - 18,499,970 (+)NCBICelera
Cytogenetic Map16p14NCBI
Slc27a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955524805,014 - 821,838 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955524803,793 - 821,920 (-)NCBIChiLan1.0ChiLan1.0
SLC27A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22022,340,328 - 22,376,533 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11921,345,812 - 21,383,151 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01916,956,000 - 16,993,429 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11917,929,785 - 17,966,171 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1917,929,785 - 17,966,171 (+)Ensemblpanpan1.1panPan2
SLC27A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,309,094 - 45,341,101 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,310,088 - 45,340,230 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,223,163 - 45,255,236 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,796,156 - 45,828,264 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,796,156 - 45,829,217 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12045,032,656 - 45,064,717 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,442,740 - 45,474,725 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,718,788 - 45,750,750 (-)NCBIUU_Cfam_GSD_1.0
Slc27a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,877,674 - 203,901,327 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,427,874 - 3,449,489 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,426,807 - 3,451,259 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC27A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,203,388 - 60,235,588 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,203,374 - 60,235,689 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,752,658 - 59,771,672 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC27A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,967,126 - 15,995,039 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660743,430,291 - 3,458,931 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.






Ensembl Acc Id: ENSHGLT00000004503   ⟹   ENSHGLP00000004441
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624908531,308 - 549,990 (-)Ensembl
RefSeq Acc Id: XM_004873219   ⟹   XP_004873276
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624908531,313 - 548,517 (-)NCBI
RefSeq Acc Id: XM_013068674   ⟹   XP_012924128
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624908531,313 - 549,290 (-)NCBI
RefSeq Acc Id: XM_013068675   ⟹   XP_012924129
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624908531,313 - 548,711 (-)NCBI
RefSeq Acc Id: XM_013068676   ⟹   XP_012924130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624908531,313 - 548,897 (-)NCBI
RefSeq Acc Id: XM_013068677   ⟹   XP_012924131
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624908531,313 - 549,570 (-)NCBI
RefSeq Acc Id: XM_021251079   ⟹   XP_021106738
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624908531,313 - 548,518 (-)NCBI
Protein RefSeqs XP_004873276 (Get FASTA)   NCBI Sequence Viewer  
  XP_012924128 (Get FASTA)   NCBI Sequence Viewer  
  XP_012924129 (Get FASTA)   NCBI Sequence Viewer  
  XP_012924130 (Get FASTA)   NCBI Sequence Viewer  
  XP_012924131 (Get FASTA)   NCBI Sequence Viewer  
  XP_021106738 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000004441
RefSeq Acc Id: XP_012924131   ⟸   XM_013068677
- Peptide Label: isoform X2
- UniProtKB: A0AAX6QP74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924128   ⟸   XM_013068674
- Peptide Label: isoform X2
- UniProtKB: A0AAX6QP74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924130   ⟸   XM_013068676
- Peptide Label: isoform X2
- UniProtKB: A0AAX6QP74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924129   ⟸   XM_013068675
- Peptide Label: isoform X2
- UniProtKB: A0AAX6QP74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021106738   ⟸   XM_021251079
- Peptide Label: isoform X3
- UniProtKB: A0AAX6SFK0 (UniProtKB/TrEMBL)



1 to 17 of 17 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSHGLG00000003247 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004503 ENTREZGENE
Gene3D-CATH 3.30.300.30 UniProtKB/TrEMBL
  N-terminal domain of ligase-like UniProtKB/TrEMBL
InterPro AMP-bd_C_sf UniProtKB/TrEMBL
  AMP-binding_CS UniProtKB/TrEMBL
  AMP-dep_synth/lig_dom UniProtKB/TrEMBL
  ANL_N_sf UniProtKB/TrEMBL
NCBI Gene Slc27a1 ENTREZGENE
PANTHER LONG-CHAIN FATTY ACID TRANSPORT PROTEIN UniProtKB/TrEMBL
  LONG-CHAIN FATTY ACID TRANSPORT PROTEIN 1 UniProtKB/TrEMBL
Pfam AMP-binding UniProtKB/TrEMBL
PROSITE AMP_BINDING UniProtKB/TrEMBL
Superfamily-SCOP Acetyl-CoA synthetase-like UniProtKB/TrEMBL
UniProt A0AAX6QDH7 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QP74 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SFK0 ENTREZGENE, UniProtKB/TrEMBL
1 to 17 of 17 rows