Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:vitamin B6 binding
go back to main search page
Accession:GO:0070279 term browser browse the term
Definition:Binding to a vitamin B6 compound: pyridoxal, pyridoxamine, pyridoxine, or the active form, pyridoxal phosphate.


show annotations for term's descendants           Sort by:
vitamin B6 binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scly selenocysteine lyase enables IDA PMID:20164179 CAFA PMID:20164179 RGD:12793035 NCBI chr 9:91,890,269...91,910,947
Ensembl chr 9:91,890,306...91,910,941 		JBrowse link
pyridoxal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase IDA RGD PMID:6255956 RGD:2303024 NCBI chr20:10,210,276...10,232,314
Ensembl chr20:10,210,289...10,232,110 		JBrowse link
pyridoxal phosphate binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07011698.1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 2:153,941,154...153,942,719 JBrowse link
G Aadat aminoadipate aminotransferase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:29,509,392...29,544,332
Ensembl chr16:29,509,394...29,544,332 		JBrowse link
G Abat 4-aminobutyrate aminotransferase enables ISS
ISO
IEA
IBA 		GO_REF:0000024
(PMID:15650327)
(PMID:6470007)
GO_REF:0000002
GO_REF:0000033
GO_REF:0000107 		UniProt
RGD
InterPro
GO_Central
Ensembl		 PMID:6470007 PMID:15650327 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:6,996,688...7,092,835
Ensembl chr10:6,999,819...7,092,835 		JBrowse link
G Accs 1-aminocyclopropane-1-carboxylate synthase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:79,805,254...79,820,830
Ensembl chr 3:79,806,587...79,820,835 		JBrowse link
G Accsl 1-aminocyclopropane-1-carboxylate synthase-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:79,826,464...79,841,163
Ensembl chr 3:79,826,464...79,841,163 		JBrowse link
G Agxt alanine--glyoxylate aminotransferase enables ISO (PMID:15802217), (PMID:17696873), (PMID:20133649) RGD PMID:15802217 PMID:17696873 PMID:20133649 NCBI chr 9:93,675,384...93,685,337
Ensembl chr 9:93,675,384...93,685,336 		JBrowse link
G Agxt2 alanine-glyoxylate aminotransferase 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:59,336,252...59,377,664
Ensembl chr 2:59,336,283...59,377,926 		JBrowse link
G Alas1 5'-aminolevulinate synthase 1 enables IEA GO_REF:0000104
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr 8:106,876,514...106,889,917
Ensembl chr 8:106,876,514...106,889,917 		JBrowse link
G Alas2 5'-aminolevulinate synthase 2 enables IEA GO_REF:0000002
GO_REF:0000104 		InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr  X:19,463,146...19,486,526
Ensembl chr  X:19,463,171...19,486,519 		JBrowse link
G Alb albumin enables ISS
ISO
IEA 		GO_REF:0000024
(PMID:16201370)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:16201370 GO_REF:0000024 GO_REF:0000107 NCBI chr14:17,891,564...17,907,043
Ensembl chr14:17,607,381...17,622,836 		JBrowse link
G Cbs cystathionine beta synthase enables TAS
ISO
ISS
IEA 		(PMID:18776696), (PMID:7929220)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:7929220 PMID:18776696 PMID:10801907 GO_REF:0000024 GO_REF:0000107, RGD:1359025 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Cisd1 CDGSH iron sulfur domain 1 enables ISS
ISO 		GO_REF:0000024
(PMID:36194135) 		UniProt
RGD		 PMID:36194135 GO_REF:0000024 NCBI chr20:17,255,302...17,268,688
Ensembl chr20:17,255,151...17,284,924 		JBrowse link
G Csad cysteine sulfinic acid decarboxylase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:133,308,571...133,337,914
Ensembl chr 7:133,308,574...133,337,615 		JBrowse link
G Cth cystathionine gamma-lyase enables TAS
ISS
IEA
ISO
IBA 		GO_REF:0000024
GO_REF:0000002
(PMID:10212249), (PMID:19019829)
GO_REF:0000107
GO_REF:0000033 		UniProt
InterPro
RGD
Ensembl
GO_Central		 PMID:10212249 PMID:19019829 PMID:10801907 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:1359025 NCBI chr 2:246,975,888...247,002,234
Ensembl chr 2:246,975,894...247,002,234 		JBrowse link
G Ddc dopa decarboxylase enables TAS
IDA
IEA 		GO_REF:0000002 InterPro
RGD		 PMID:7567987 PMID:8422386 GO_REF:0000002, RGD:727686, RGD:4139896 NCBI chr14:86,378,685...86,469,189
Ensembl chr14:86,378,685...86,469,208 		JBrowse link
G ENSRNOG00000064101 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:9,679,203...9,680,482 JBrowse link
G ENSRNOG00000065410 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 2:178,497,468...178,499,169 JBrowse link
G Etnppl ethanolamine-phosphate phospho-lyase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:219,173,048...219,194,646
Ensembl chr 2:219,172,978...219,192,212 		JBrowse link
G Gad1 glutamate decarboxylase 1 enables IDA
IEA 		GO_REF:0000002 InterPro
RGD		 PMID:1880546 GO_REF:0000002, RGD:6480263 NCBI chr 3:55,369,704...55,410,335
Ensembl chr 3:55,369,704...55,410,333 		JBrowse link
G Gad2 glutamate decarboxylase 2 enables IDA
IEA 		GO_REF:0000002 InterPro
RGD		 PMID:1880546 GO_REF:0000002, RGD:6480263 NCBI chr17:84,763,630...84,826,155
Ensembl chr17:84,763,628...84,826,155 		JBrowse link
G Gadl1 glutamate decarboxylase-like 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:115,605,609...115,785,676
Ensembl chr 8:115,605,873...115,784,410 		JBrowse link
G Gcat glycine C-acetyltransferase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:112,475,572...112,481,920
Ensembl chr 7:110,595,091...110,601,473 		JBrowse link
G Gldc glycine decarboxylase enables IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:6778858 GO_REF:0000033, RGD:1642728 NCBI chr 1:227,883,249...227,962,119
Ensembl chr 1:227,883,249...227,962,097 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Got1l1 glutamic-oxaloacetic transaminase 1-like 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:64,860,308...64,873,656
Ensembl chr16:64,860,704...64,866,162 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 enables IDA
IMP
IEA 		GO_REF:0000002 InterPro
RGD		 PMID:14522984 PMID:12686151 GO_REF:0000002, RGD:1582383, RGD:2289396 NCBI chr19:9,180,428...9,206,113
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
G Got2-ps6 glutamic-oxaloacetic transaminase 2, pseudogene 6 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:60,551,686...60,552,959
Ensembl chr  X:60,551,686...60,552,959 		JBrowse link
G Gpt glutamic--pyruvic transaminase enables NAS
IEA 		GO_REF:0000002 InterPro
RGD		 PMID:2043642 GO_REF:0000002, RGD:1625222 NCBI chr 7:110,295,599...110,300,134
Ensembl chr 7:108,416,642...108,419,494 		JBrowse link
G Gpt2 glutamic--pyruvic transaminase 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:21,526,800...21,561,314
Ensembl chr19:21,517,621...21,560,610 		JBrowse link
G Hdc histidine decarboxylase enables IDA
IEA 		GO_REF:0000002 InterPro
RGD		 PMID:4449071 PMID:5898 PMID:7075603 PMID:14622303 PMID:12204113 More... GO_REF:0000002, RGD:2303726, RGD:2303727, RGD:2303728, RGD:2303733, RGD:2303734, RGD:2303735 NCBI chr 3:113,847,256...113,865,334
Ensembl chr 3:113,847,260...113,865,341 		JBrowse link
G Kyat1 kynurenine aminotransferase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:33,857,407...33,891,153
Ensembl chr 3:13,459,591...13,493,355 		JBrowse link
G Kyat3 kynurenine aminotransferase 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:231,701,881...231,747,462
Ensembl chr 2:231,701,963...231,747,227 		JBrowse link
G Kynu kynureninase enables IDA
IEA 		GO_REF:0000104
GO_REF:0000002 		UniProt
InterPro
RGD		 PMID:7451426 GO_REF:0000002 GO_REF:0000104, RGD:2290547 NCBI chr 3:27,778,646...27,929,470
Ensembl chr 3:27,778,772...27,929,488 		JBrowse link
G Mocos molybdenum cofactor sulfurase enables IEA GO_REF:0000104
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr18:15,931,659...15,977,415
Ensembl chr18:15,931,654...15,977,187 		JBrowse link
G Mtarc1 mitochondrial amidoxime reducing component 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:96,324,377...96,362,677
Ensembl chr13:96,339,757...96,397,796 		JBrowse link
G Mtarc2 mitochondrial amidoxime reducing component 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:96,362,810...96,397,284 JBrowse link
G Nfs1 NFS1 cysteine desulfurase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:165,097,390...165,119,730
Ensembl chr 3:144,637,309...144,659,666 		JBrowse link
G Oat ornithine aminotransferase enables IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:187,347,862...187,367,644
Ensembl chr 1:187,347,865...187,367,682 		JBrowse link
G Pdxdc1 pyridoxal-dependent decarboxylase domain containing 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:2,025,056...2,113,712
Ensembl chr10:2,025,360...2,113,520 		JBrowse link
G Phykpl 5-phosphohydroxy-L-lysine phospho-lyase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:35,839,965...35,863,631
Ensembl chr10:35,839,983...35,859,508 		JBrowse link
G Plpbp pyridoxal phosphate binding protein enables IBA
IEA 		GO_REF:0000033
GO_REF:0000002
GO_REF:0000104 		GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr16:65,003,292...65,014,886
Ensembl chr16:65,002,223...65,014,886 		JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase enables ISO
IEA 		(PMID:12824491)
GO_REF:0000107 		RGD
Ensembl		 PMID:12824491 GO_REF:0000107 NCBI chr10:81,924,584...81,930,844
Ensembl chr10:81,924,569...81,930,871 		JBrowse link
G Psat1 phosphoserine aminotransferase 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:213,196,709...213,218,564
Ensembl chr 1:213,196,709...213,218,682 		JBrowse link
G Pygb glycogen phosphorylase B enables IEA
IBA 		GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 3:160,072,141...160,118,930
Ensembl chr 3:139,611,749...139,663,553 		JBrowse link
G Pygl glycogen phosphorylase L enables IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 6:94,433,558...94,476,219
Ensembl chr 6:88,697,593...88,740,310 		JBrowse link
G Pygm glycogen phosphorylase, muscle associated enables IDA
IEA
IBA 		GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central
RGD		 PMID:11692172 GO_REF:0000002 GO_REF:0000033, RGD:1599897 NCBI chr 1:213,119,805...213,134,622
Ensembl chr 1:203,690,533...203,705,368 		JBrowse link
G Sds serine dehydratase enables IEA
ISO 		GO_REF:0000107
(PMID:15689518), (PMID:16580895)
GO_REF:0000002 		Ensembl
RGD
InterPro		 PMID:15689518 PMID:16580895 GO_REF:0000002 GO_REF:0000107 NCBI chr12:36,083,226...36,090,540
Ensembl chr12:36,083,229...36,088,203 		JBrowse link
G Sdsl serine dehydratase-like enables IDA PMID:33079132 UniProt PMID:33079132 RGD:407430014 NCBI chr12:36,099,693...36,109,914
Ensembl chr12:36,099,693...36,109,906 		JBrowse link
G Sgpl1 sphingosine-1-phosphate lyase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:29,047,793...29,094,209
Ensembl chr20:29,047,796...29,094,084 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 enables TAS
IEA
IBA
ISO
IDA 		GO_REF:0000002
GO_REF:0000033
(PMID:17482557), (PMID:24698160) 		InterPro
GO_Central
RGD		 PMID:17482557 PMID:24698160 PMID:15671219 PMID:3110140 GO_REF:0000002 GO_REF:0000033, RGD:1359815, RGD:2300383 NCBI chr10:45,968,959...45,990,341
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 enables TAS
IEA
IBA
ISO
IDA 		GO_REF:0000107
GO_REF:0000002
GO_REF:0000033
(PMID:25619277) 		Ensembl
InterPro
GO_Central
RGD		 PMID:25619277 PMID:15671219 PMID:3110140 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107, RGD:1359815, RGD:2300383 NCBI chr 7:65,244,247...65,249,580
Ensembl chr 7:63,358,961...63,364,236 		JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:11,877,249...11,916,295
Ensembl chr17:11,877,249...11,916,295 		JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:106,948,682...107,031,532
Ensembl chr 6:106,950,949...107,031,542 		JBrowse link
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:126,847,878...126,978,010
Ensembl chr 3:126,847,878...126,978,010 		JBrowse link
G Srr serine racemase enables IDA
IEA
ISO
IBA 		GO_REF:0000107
(PMID:10557334)
GO_REF:0000033
GO_REF:0000002
PMID:20106978
(PMID:20106978) 		Ensembl
RGD
GO_Central
InterPro		 PMID:10557334 PMID:20106978 PMID:9892700 PMID:20106978 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107, RGD:2302218, RGD:8554326 NCBI chr10:59,769,563...59,786,688
Ensembl chr10:59,769,571...59,787,011 		JBrowse link
G Tat tyrosine aminotransferase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:37,947,153...37,957,717
Ensembl chr19:37,947,112...37,958,031 		JBrowse link
G Thnsl2 threonine synthase-like 2 enables IEA
ISO
IBA 		GO_REF:0000107
(PMID:17034760)
GO_REF:0000033 		Ensembl
RGD
GO_Central		 PMID:17034760 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:103,112,974...103,132,122
Ensembl chr 4:103,112,963...103,132,017 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21054
    binding 18050
      small molecule binding 6435
        heterocyclic compound binding 2487
          vitamin B6 binding 59
            pyridoxal binding 1
            pyridoxal phosphate binding 57
            pyridoxamine binding 0
            pyridoxine binding 0
paths to the root