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ONTOLOGY REPORT - ANNOTATIONS


Term:vitamin binding
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Accession:GO:0019842 term browser browse the term
Definition:Binding to a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.


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vitamin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cblif cobalamin binding intrinsic factor TAS RGD PMID:3422425 RGD:61608 NCBI chr 1:228,118,048...228,132,296
Ensembl chr 1:228,118,048...228,132,404
JBrowse link
G Ggcx gamma-glutamyl carboxylase enables IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:12754193, PMID:21873635 RGD:1582507, RGD:13792537 NCBI chr 4:100,277,345...100,293,097
Ensembl chr 4:100,277,391...100,293,250
JBrowse link
G Pank3 pantothenate kinase 3 enables ISO (PMID:27555321) RGD PMID:27555321 NCBI chr10:20,591,432...20,615,258
Ensembl chr10:20,591,432...20,615,258
JBrowse link
G Pygl glycogen phosphorylase L enables ISO (PMID:12204691) RGD PMID:12204691 NCBI chr 6:92,597,759...92,643,734
Ensembl chr 6:92,597,706...92,643,847
JBrowse link
G Ttpa alpha tocopherol transfer protein IDA RGD PMID:8349655 RGD:730016 NCBI chr 5:34,007,926...34,029,315
Ensembl chr 5:34,007,920...34,028,452
JBrowse link
11-cis retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 enables ISO (PMID:23144455) RGD PMID:23144455 NCBI chr 2:225,645,539...225,783,288
Ensembl chr 2:225,645,568...225,783,287
JBrowse link
G Opn3 opsin 3 enables ISO (PMID:31097585) RGD PMID:31097585 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994
JBrowse link
G Opn4 opsin 4 enables ISO
ISS
(PMID:15674244)
GO_REF:0000024
RGD
UniProt
PMID:15674244 GO_REF:0000024 NCBI chr16:10,943,353...10,966,602
Ensembl chr16:10,943,341...10,952,549
JBrowse link
G Opn5 opsin 5 enables ISO (PMID:22043319)
(MGI:5582695|PMID:24403072), (MGI:6230806|PMID:22043319)
RGD PMID:22043319 PMID:24403072 MGI:5582695 MGI:6230806 NCBI chr 9:21,045,457...21,092,517
Ensembl chr 9:21,045,457...21,093,172
JBrowse link
G Rho rhodopsin enables ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
G Rlbp1 retinaldehyde binding protein 1 enables ISO (MGI:1097298|PMID:9326942) RGD PMID:9326942 MGI:1097298 NCBI chr 1:141,097,789...141,111,375
Ensembl chr 1:141,097,695...141,111,400
JBrowse link
all-trans retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 enables ISO (PMID:20404325), (PMID:29847635), (PMID:33375396) RGD PMID:20404325 PMID:29847635 PMID:33375396 NCBI chr 2:225,645,539...225,783,288
Ensembl chr 2:225,645,568...225,783,287
JBrowse link
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide enables ISO (PMID:15369820) RGD PMID:15369820 NCBI chr 2:243,702,035...243,720,063
Ensembl chr 2:243,700,784...243,740,899
JBrowse link
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 enables ISO (PMID:26936974) RGD PMID:26936974 NCBI chr12:17,382,749...17,387,909
Ensembl chr12:17,383,159...17,387,879
JBrowse link
G Opn3 opsin 3 enables ISO (PMID:31097585) RGD PMID:31097585 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994
JBrowse link
all-trans-retinol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 enables ISO (PMID:26936974) RGD PMID:26936974 NCBI chr12:17,382,749...17,387,909
Ensembl chr12:17,383,159...17,387,879
JBrowse link
G Rbp1 retinol binding protein 1 enables ISO
ISS
(PMID:28057518)
GO_REF:0000024
RGD
UniProt
PMID:28057518 GO_REF:0000024 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842
JBrowse link
biotin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acaca acetyl-CoA carboxylase alpha IDA RGD PMID:12949377 RGD:1601566 NCBI chr10:71,519,392...71,719,910
Ensembl chr10:71,536,533...71,719,910
JBrowse link
G Acacb acetyl-CoA carboxylase beta IDA RGD PMID:12949377 RGD:1601566 NCBI chr12:48,127,149...48,238,969
Ensembl chr12:48,127,149...48,238,887
JBrowse link
G Hlcs holocarboxylase synthetase enables ISO (PMID:14613969) RGD PMID:14613969 NCBI chr11:34,357,372...34,537,798
Ensembl chr11:34,352,287...34,526,931
JBrowse link
G Pc pyruvate carboxylase enables IMP
IEA
IDA
GO_REF:0000002 InterPro PMID:12949377, PMID:12949377 GO_REF:0000002, RGD:1601566, RGD:1601566 NCBI chr 1:219,759,157...219,859,854
Ensembl chr 1:219,759,183...219,859,848
JBrowse link
calcidiol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gc GC, vitamin D binding protein enables ISO
IEA
(PMID:11799400)
GO_REF:0000107
RGD
Ensembl
PMID:11799400 GO_REF:0000107 NCBI chr14:20,267,023...20,302,577
Ensembl chr14:20,266,891...20,302,581
JBrowse link
calcitriol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vdr vitamin D receptor enables IDA
IEA
ISO
GO_REF:0000107
(PMID:10678179), (PMID:12016314), (PMID:28698609)
Ensembl
RGD
PMID:10678179 PMID:12016314 PMID:28698609, PMID:8179318 GO_REF:0000107, RGD:8158087 NCBI chr 7:139,344,452...139,394,138
Ensembl chr 7:139,342,063...139,394,166
JBrowse link
cobalamin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cblif cobalamin binding intrinsic factor enables IDA
IEA
ISO
IBA
GO_REF:0000107
(PMID:14695536)
PMID:21873635
Ensembl
RGD
PMID:14695536, PMID:7150665, PMID:21873635 GO_REF:0000107, RGD:1624372, RGD:13792537 NCBI chr 1:228,118,048...228,132,296
Ensembl chr 1:228,118,048...228,132,404
JBrowse link
G Cd320 CD320 molecule enables ISO (PMID:18779389) RGD PMID:18779389 NCBI chr 7:18,700,445...18,706,244
Ensembl chr 7:18,700,344...18,706,244
JBrowse link
G Cubn cubilin enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:80,584,921...80,807,181
Ensembl chr17:80,584,878...80,807,243
JBrowse link
G Lmbrd1 LMBR1 domain containing 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:30,939,555...31,038,381
Ensembl chr 9:30,939,555...31,038,379
JBrowse link
G Mmab metabolism of cobalamin associated B enables ISO (PMID:28497574) RGD PMID:28497574 NCBI chr12:47,920,712...47,935,438
Ensembl chr12:47,920,743...47,935,525
JBrowse link
G Mmachc metabolism of cobalamin associated C enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:135,555,587...135,561,723
Ensembl chr 5:135,555,565...135,561,914
JBrowse link
G Mmut methylmalonyl-CoA mutase enables ISO (PMID:1978672), (PMID:20876572), (PMID:21138732), (PMID:28943303) RGD PMID:1978672 PMID:20876572 PMID:21138732 PMID:28943303 NCBI chr 9:23,323,934...23,352,144
Ensembl chr 9:23,323,936...23,352,668
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase enables TAS
IEA
GO_REF:0000104 UniProt PMID:15845641 GO_REF:0000104, RGD:1359026 NCBI chr17:66,210,444...66,295,014
Ensembl chr17:66,210,461...66,295,014
JBrowse link
G Tcn2 transcobalamin 2 enables IDA
IBA
ISO
IEA
PMID:21873635
(PMID:16537422), (PMID:27411955), (PMID:8443384)
GO_REF:0000107
RGD
Ensembl
PMID:8443384 PMID:16537422 PMID:27411955, PMID:11287214, PMID:21873635 GO_REF:0000107, RGD:1601485, RGD:13792537 NCBI chr14:84,173,992...84,189,299
Ensembl chr14:84,174,138...84,189,266
JBrowse link
D3 vitamins binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2r1 cytochrome P450, family 2, subfamily r, polypeptide 1 enables ISO (PMID:18511070) RGD PMID:18511070 NCBI chr 1:184,060,521...184,106,604
Ensembl chr 1:184,093,920...184,106,200
JBrowse link
folic acid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhfr dihydrofolate reductase enables ISO (PMID:2303423) RGD PMID:2303423 NCBI chr 2:21,931,887...21,958,927
Ensembl chr 2:21,931,493...21,962,453
JBrowse link
G Dmgdh dimethylglycine dehydrogenase IDA RGD PMID:6159630, PMID:6163778 RGD:1599787, RGD:7245485 NCBI chr 2:23,289,376...23,370,360
Ensembl chr 2:23,289,374...23,370,477
JBrowse link
G Folr1 folate receptor alpha enables IDA
ISO
(PMID:10787414), (PMID:14722620), (PMID:23851396), (PMID:2527252) RGD PMID:2527252 PMID:10787414 PMID:14722620 PMID:23851396, PMID:10751329 RGD:1358236 NCBI chr 1:166,934,457...166,945,864
Ensembl chr 1:166,934,460...166,943,592
JBrowse link
G Folr2 folate receptor beta enables ISO (PMID:19116913), (PMID:25015955), (PMID:4066659) RGD PMID:4066659 PMID:19116913 PMID:25015955 NCBI chr 1:166,915,045...166,933,377
Ensembl chr 1:166,915,045...166,919,302
JBrowse link
G Ftcd formimidoyltransferase cyclodeaminase enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:12,806,957...12,820,466
Ensembl chr20:12,806,957...12,820,466
JBrowse link
G Gnmt glycine N-methyltransferase TAS
IDA
RGD PMID:8278367, PMID:17158459 RGD:1545057, RGD:7242951 NCBI chr 9:16,565,274...16,568,626
Ensembl chr 9:16,565,225...16,568,627
JBrowse link
G Izumo1r IZUMO1 receptor, JUNO NOT|enables ISO (MGI:5568137|PMID:24739963) RGD PMID:24739963 MGI:5568137 NCBI chr 8:13,416,418...13,418,907
Ensembl chr 8:13,416,393...13,420,439
JBrowse link
G Mthfs methenyltetrahydrofolate synthetase enables ISO (PMID:19738041), (PMID:7766710) RGD PMID:7766710 PMID:19738041 NCBI chr 8:96,564,877...96,614,386
Ensembl chr 8:96,564,877...96,614,348
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase IDA RGD PMID:11730351 RGD:1601423 NCBI chr17:66,210,444...66,295,014
Ensembl chr17:66,210,461...66,295,014
JBrowse link
G Sardh sarcosine dehydrogenase IDA RGD PMID:6163778 RGD:7245485 NCBI chr 3:5,737,203...5,802,153
Ensembl chr 3:5,737,200...5,802,129
JBrowse link
G Slc19a1 solute carrier family 19 member 1 enables IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:11600421, PMID:21873635 RGD:735239, RGD:13792537 NCBI chr20:12,334,675...12,354,517
Ensembl chr20:12,334,676...12,352,377
JBrowse link
G Slc46a1 solute carrier family 46 member 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:65,728,508...65,741,708
Ensembl chr10:65,733,991...65,740,828
JBrowse link
G Tyms thymidylate synthetase IDA RGD PMID:7537805 RGD:2317419 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link
G Uros uroporphyrinogen III synthase IDA RGD PMID:6466301 RGD:2303402 NCBI chr 1:205,755,766...205,778,170
Ensembl chr 1:205,756,640...205,777,167
JBrowse link
L-ascorbic acid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07004992.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 1:173,275,336...173,284,941 JBrowse link
G Dbh dopamine beta-hydroxylase enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:5,709,236...5,731,895
Ensembl chr 3:5,709,236...5,731,898
JBrowse link
G Egln1 egl-9 family hypoxia-inducible factor 1 enables IEA GO_REF:0000043
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr19:57,660,194...57,701,158
Ensembl chr19:57,662,278...57,699,113
JBrowse link
G Egln2 egl-9 family hypoxia-inducible factor 2 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:83,969,456...83,977,665
Ensembl chr 1:83,969,457...83,977,236
JBrowse link
G Egln3 egl-9 family hypoxia-inducible factor 3 enables IEA GO_REF:0000043
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr 6:75,050,329...75,075,795
Ensembl chr 6:75,050,329...75,075,795
JBrowse link
G Ogfod1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:11,425,301...11,451,085
Ensembl chr19:11,425,105...11,451,278
JBrowse link
G Ogfod2 2-oxoglutarate and iron-dependent oxygenase domain containing 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:37,907,130...37,910,446
Ensembl chr12:37,907,130...37,910,439
JBrowse link
G Ogfod3 2-oxoglutarate and iron-dependent oxygenase domain containing 3 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:110,378,533...110,406,377
Ensembl chr10:110,378,534...110,406,377
JBrowse link
G P3h1 prolyl 3-hydroxylase 1 enables IEA GO_REF:0000002
GO_REF:0000043
InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr 5:138,279,597...138,294,280
Ensembl chr 5:138,279,506...138,294,262
JBrowse link
G P3h2 prolyl 3-hydroxylase 2 enables IEA GO_REF:0000002
GO_REF:0000043
InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr11:78,028,885...78,169,746
Ensembl chr11:78,029,038...78,169,648
JBrowse link
G P3h3 prolyl 3-hydroxylase 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:157,359,331...157,375,186
Ensembl chr 4:157,359,332...157,372,861
JBrowse link
G P4ha1 prolyl 4-hydroxylase subunit alpha 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:28,920,616...28,972,576
Ensembl chr20:28,920,616...28,971,966
JBrowse link
G P4ha2 prolyl 4-hydroxylase subunit alpha 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:39,435,227...39,464,134
Ensembl chr10:39,435,227...39,464,188
JBrowse link
G P4ha3 prolyl 4-hydroxylase subunit alpha 3 enables IEA GO_REF:0000043
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr 1:165,295,835...165,330,922
Ensembl chr 1:165,295,847...165,330,322
JBrowse link
G P4htm prolyl 4-hydroxylase, transmembrane enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:117,364,895...117,383,275
Ensembl chr 8:117,365,101...117,382,715
JBrowse link
G Pam peptidylglycine alpha-amidating monooxygenase enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:111,028,543...111,177,588
Ensembl chr 9:111,028,575...111,177,602
JBrowse link
G Phyh phytanoyl-CoA 2-hydroxylase enables ISO (PMID:10744784) RGD PMID:10744784 NCBI chr17:77,287,580...77,304,482
Ensembl chr17:77,287,188...77,304,530
JBrowse link
G Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 enables IMP
IEA
GO_REF:0000002 InterPro PMID:11714250 GO_REF:0000002, RGD:1599090 NCBI chr 5:164,720,629...164,747,071
Ensembl chr 5:164,720,587...164,747,083
JBrowse link
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 enables IEA GO_REF:0000043
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr 8:99,977,334...100,059,736
Ensembl chr 8:99,977,334...100,059,736
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:22,716,421...22,726,982
Ensembl chr12:22,716,423...22,726,982
JBrowse link
phosphopantetheine binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fasn fatty acid synthase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:109,987,735...110,005,901
Ensembl chr10:109,987,735...110,005,901
JBrowse link
pyridoxal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase IDA RGD PMID:6255956 RGD:2303024 NCBI chr20:10,930,651...10,952,194
Ensembl chr20:10,930,518...10,952,391
JBrowse link
pyridoxal phosphate binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028989.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr10:1,622,573...1,674,701 JBrowse link
G Aadat aminoadipate aminotransferase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:32,832,001...32,868,680
Ensembl chr16:32,832,061...32,868,702
JBrowse link
G Abat 4-aminobutyrate aminotransferase enables ISS
ISO
IBA
GO_REF:0000024
(PMID:6470007)
(PMID:15650327)
PMID:21873635
UniProt
RGD
PMID:6470007 PMID:15650327, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:7,093,406...7,200,439
Ensembl chr10:7,093,405...7,200,499
JBrowse link
G Accs 1-aminocyclopropane-1-carboxylate synthase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:82,742,830...82,757,273
Ensembl chr 3:82,742,831...82,757,204
JBrowse link
G Accsl 1-aminocyclopropane-1-carboxylate synthase-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:82,762,861...82,777,814
Ensembl chr 3:82,762,862...82,777,814
JBrowse link
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase enables ISO (PMID:15802217), (PMID:17696873), (PMID:20133649) RGD PMID:15802217 PMID:17696873 PMID:20133649 NCBI chr 9:100,281,339...100,291,292
Ensembl chr 9:100,281,339...100,291,291
JBrowse link
G Agxt2 alanine-glyoxylate aminotransferase 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:60,337,667...60,379,144
Ensembl chr 2:60,337,667...60,379,420
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 enables IEA GO_REF:0000104
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr 8:114,927,704...114,941,038
Ensembl chr 8:114,927,722...114,940,177
JBrowse link
G Alas2 5'-aminolevulinate synthase 2 enables IEA GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chr  X:23,167,576...23,187,356
Ensembl chr  X:23,167,696...23,187,341
JBrowse link
G Alb albumin enables ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:16201370)
UniProt
Ensembl
RGD
PMID:16201370 GO_REF:0000024 GO_REF:0000107 NCBI chr14:19,176,275...19,191,793
Ensembl chr14:19,176,277...19,191,863
JBrowse link
G Cbs cystathionine beta synthase enables TAS
ISS
ISO
GO_REF:0000024
(PMID:18776696), (PMID:7929220)
UniProt
RGD
PMID:7929220 PMID:18776696, PMID:10801907 GO_REF:0000024, RGD:1359025 NCBI chr20:10,361,987...10,386,663
Ensembl chr20:10,361,988...10,386,751
JBrowse link
G Csad cysteine sulfinic acid decarboxylase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:143,781,520...143,810,880
Ensembl chr 7:143,781,702...143,793,970
JBrowse link
G Cth cystathionine gamma-lyase enables TAS
ISO
IBA
IEA
ISS
(PMID:10212249), (PMID:19019829)
PMID:21873635
GO_REF:0000002
GO_REF:0000024
RGD
InterPro
UniProt
PMID:10212249 PMID:19019829, PMID:10801907, PMID:21873635 GO_REF:0000002 GO_REF:0000024, RGD:1359025, RGD:13792537 NCBI chr 2:264,266,959...264,293,040
Ensembl chr 2:264,266,984...264,293,046
JBrowse link
G Ddc dopa decarboxylase enables TAS
IEA
IDA
GO_REF:0000002 InterPro PMID:7567987, PMID:8422386 GO_REF:0000002, RGD:727686, RGD:4139896 NCBI chr14:91,905,919...91,996,816
Ensembl chr14:91,905,919...91,996,774
JBrowse link
G Etnppl ethanolamine-phosphate phospho-lyase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:235,738,377...235,760,351
Ensembl chr 2:235,738,416...235,760,352
JBrowse link
G Gad1 glutamate decarboxylase 1 enables IDA
IEA
GO_REF:0000002 InterPro PMID:1880546 GO_REF:0000002, RGD:6480263 NCBI chr 3:56,861,440...56,902,139
Ensembl chr 3:56,861,396...56,902,157
JBrowse link
G Gad2 glutamate decarboxylase 2 IDA RGD PMID:1880546 RGD:6480263 NCBI chr17:89,171,576...89,234,770
Ensembl chr17:89,171,250...89,238,040
JBrowse link
G Gcat glycine C-acetyltransferase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:120,263,068...120,269,365
Ensembl chr 7:120,263,054...120,269,451
JBrowse link
G Gldc glycine decarboxylase enables IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:6778858, PMID:21873635 RGD:1642728, RGD:13792537 NCBI chr 1:248,295,140...248,377,122
Ensembl chr 1:248,297,331...248,377,093
JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:263,246,248...263,269,762
Ensembl chr 1:263,246,248...263,269,762
JBrowse link
G Got1l1 glutamic-oxaloacetic transaminase 1-like 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:69,022,756...69,035,507
Ensembl chr16:69,022,784...69,028,179
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 IDA
IMP
RGD PMID:14522984, PMID:12686151 RGD:1582383, RGD:2289396 NCBI chr19:9,587,637...9,613,323
Ensembl chr19:9,587,653...9,613,340
JBrowse link
G Gpt glutamic--pyruvic transaminase NAS RGD PMID:2043642 RGD:1625222 NCBI chr 7:117,759,083...117,761,932
Ensembl chr 7:117,759,083...117,761,931
JBrowse link
G Gpt2 glutamic--pyruvic transaminase 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:22,599,003...22,633,529
Ensembl chr19:22,590,881...22,632,071
JBrowse link
G Hdc histidine decarboxylase enables IDA
IEA
GO_REF:0000002 InterPro PMID:4449071, PMID:9525922, PMID:12204113, PMID:14622303, PMID:7075603, PMID:5898 GO_REF:0000002, RGD:2303726, RGD:2303735, RGD:2303734, RGD:2303733, RGD:2303728, RGD:2303727 NCBI chr 3:119,057,524...119,075,599
Ensembl chr 3:119,057,517...119,075,619
JBrowse link
G Kyat1 kynurenine aminotransferase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:8,752,289...8,785,617
Ensembl chr 3:8,752,625...8,766,433
JBrowse link
G Kyat3 kynurenine aminotransferase 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:248,644,473...248,690,289
Ensembl chr 2:248,649,441...248,690,089
JBrowse link
G Kynu kynureninase IDA RGD PMID:7451426 RGD:2290547 NCBI chr 3:28,416,926...28,566,939
Ensembl chr 3:28,416,954...28,566,928
JBrowse link
G LOC100910481 MOSC domain-containing protein 2, mitochondrial-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002
G Mocos molybdenum cofactor sulfurase enables IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr18:16,590,086...16,636,312
Ensembl chr18:16,590,197...16,636,084
JBrowse link
G Mtarc1 mitochondrial amidoxime reducing component 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:102,693,679...102,724,120
Ensembl chr13:102,698,546...102,721,218
JBrowse link
G Mtarc2 mitochondrial amidoxime reducing component 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:102,724,266...102,755,511
Ensembl chr13:102,724,348...102,756,174
JBrowse link
G Nfs1 NFS1 cysteine desulfurase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:151,665,813...151,688,151
Ensembl chr 3:151,665,814...151,688,149
Ensembl chr 3:151,665,814...151,688,149
JBrowse link
G Oat ornithine aminotransferase enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:204,562,289...204,582,070
Ensembl chr 1:204,562,289...204,582,070
JBrowse link
G Pdxdc1 pyridoxal-dependent decarboxylase domain containing 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:3,232,794...3,321,438
Ensembl chr10:3,232,794...3,321,412
JBrowse link
G Phykpl 5-phosphohydroxy-L-lysine phospho-lyase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:34,938,661...34,960,661
Ensembl chr10:34,938,667...34,960,840
JBrowse link
G Plpbp pyridoxal phosphate binding protein enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:69,164,654...69,176,245
Ensembl chr16:69,163,577...69,176,036
JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase enables ISO (PMID:12824491) RGD PMID:12824491 NCBI chr10:84,874,926...84,881,190
Ensembl chr10:84,874,927...84,881,190
JBrowse link
G Psat1 phosphoserine aminotransferase 1 enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:233,124,089...233,145,941
Ensembl chr 1:233,124,092...233,145,941
JBrowse link
G Pygb glycogen phosphorylase B enables IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 3:146,581,063...146,629,504
Ensembl chr 3:146,582,752...146,634,535
JBrowse link
G Pygl glycogen phosphorylase L enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:92,597,759...92,643,734
Ensembl chr 6:92,597,706...92,643,847
JBrowse link
G Pygm glycogen phosphorylase, muscle associated enables IDA
IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:11692172, PMID:21873635 GO_REF:0000002, RGD:1599897, RGD:13792537 NCBI chr 1:221,756,325...221,771,142
Ensembl chr 1:221,756,286...221,771,143
JBrowse link
G Sds serine dehydratase enables IEA
ISO
GO_REF:0000107
(PMID:15689518)
Ensembl
RGD
PMID:15689518 GO_REF:0000107 NCBI chr12:41,620,429...41,627,741
Ensembl chr12:41,620,393...41,627,741
JBrowse link
G Sgpl1 sphingosine-1-phosphate lyase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:30,699,936...30,769,178
Ensembl chr20:30,699,872...30,749,940
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 enables TAS
ISO
IBA
IDA
(PMID:17482557), (PMID:24698160)
PMID:21873635
RGD PMID:17482557 PMID:24698160, PMID:15671219, PMID:21873635, PMID:3110140 RGD:1359815, RGD:13792537, RGD:2300383 NCBI chr10:47,030,813...47,059,216
Ensembl chr10:47,031,050...47,059,216
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 enables TAS
ISO
IBA
IDA
(PMID:25619277)
PMID:21873635
RGD PMID:25619277, PMID:15671219, PMID:21873635, PMID:3110140 RGD:1359815, RGD:13792537, RGD:2300383 NCBI chr 7:70,824,718...70,829,822
Ensembl chr 7:70,824,715...70,829,815
JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:11,856,525...11,895,566
Ensembl chr17:11,856,525...11,895,566
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:111,334,408...111,417,960
Ensembl chr 6:111,339,136...111,417,954
JBrowse link
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:132,560,437...132,689,313
Ensembl chr 3:132,560,506...132,692,737
JBrowse link
G Srr serine racemase enables IDA
ISO
IBA
(MGI:1347751|PMID:10557334)
PMID:20106978
(PMID:20106978)
PMID:21873635
RGD PMID:10557334 PMID:20106978, PMID:9892700, PMID:20106978, PMID:21873635 MGI:1347751, RGD:2302218, RGD:8554326, RGD:13792537 NCBI chr10:61,756,138...61,772,327
Ensembl chr10:61,756,138...61,772,293
JBrowse link
G Tat tyrosine aminotransferase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:41,675,639...41,686,195
Ensembl chr19:41,675,355...41,686,229
JBrowse link
G Thnsl2 threonine synthase-like 2 enables IBA
ISO
PMID:21873635
(MGI:3690523|PMID:17034760)
RGD PMID:17034760, PMID:21873635 MGI:3690523, RGD:13792537 NCBI chr 4:98,976,559...98,997,187
Ensembl chr 4:98,976,550...98,995,590
JBrowse link
retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b10 aldo-keto reductase family 1 member B10 IDA RGD PMID:20709016 RGD:6903952 NCBI chr 4:61,813,265...61,830,371
Ensembl chr 4:61,771,970...61,828,657
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IDA RGD PMID:8663198 RGD:724800 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Crabp1 cellular retinoic acid binding protein 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:59,344,097...59,352,135
Ensembl chr 8:59,344,083...59,352,132
JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:187,322,416...187,326,794
Ensembl chr 2:184,882,969...184,883,505
JBrowse link
G Rbp1 retinol binding protein 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842
JBrowse link
G Rbp2 retinol binding protein 2 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:106,479,253...106,527,726
Ensembl chr 8:106,503,504...106,527,711
JBrowse link
G Rbp4 retinol binding protein 4 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
G Rho rhodopsin IDA 9-cis retinaldehyde
9-cis and 11-cis retinal
RGD PMID:2525480, PMID:8814134 RGD:6893558, RGD:6893595 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
retinol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide enables ISO (PMID:10407146) RGD PMID:10407146 NCBI chr 2:243,702,035...243,720,063
Ensembl chr 2:243,700,784...243,740,899
JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide enables IDA
ISO
(PMID:9228021) RGD PMID:9228021, PMID:10829036 RGD:631904 NCBI chr 2:243,500,540...243,516,865
Ensembl chr 2:243,502,073...243,516,532
JBrowse link
G Crabp1 cellular retinoic acid binding protein 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:59,344,097...59,352,135
Ensembl chr 8:59,344,083...59,352,132
JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:187,322,416...187,326,794
Ensembl chr 2:184,882,969...184,883,505
JBrowse link
G Lrat lecithin retinol acyltransferase IDA RGD PMID:8460936, PMID:2253789, PMID:9244401 RGD:1599831, RGD:1599829, RGD:1599832 NCBI chr 2:181,896,304...181,905,366
Ensembl chr 2:181,896,305...181,905,300
JBrowse link
G Rbp1 retinol binding protein 1 IDA RGD PMID:19965581, PMID:12850148, PMID:16755609 RGD:6484697, RGD:6893656, RGD:6484735 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842
JBrowse link
G Rbp2 retinol binding protein 2 TAS
IDA
RGD PMID:3029082, PMID:12850148, PMID:19965581 RGD:729693, RGD:6893656, RGD:6484697 NCBI chr 8:106,479,253...106,527,726
Ensembl chr 8:106,503,504...106,527,711
JBrowse link
G Rbp3 retinol binding protein 3 enables IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:8282025, PMID:21873635 RGD:6893658, RGD:13792537 NCBI chr16:10,277,775...10,286,243
Ensembl chr16:10,277,775...10,286,243
JBrowse link
G Rbp4 retinol binding protein 4 enables IDA
ISO
IBA
(MGI:3687059|PMID:12484775)
PMID:21873635
(PMID:9757135)
(PMID:571335)
PMID:4708098
RGD PMID:571335 PMID:9757135 PMID:12484775, PMID:9260907, PMID:21873635, PMID:4708098 MGI:3687059, RGD:6484695, RGD:13792537, RGD:11567252 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
thiamine binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpk1 thiamin pyrophosphokinase 1 enables IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 4:72,792,252...73,174,179
Ensembl chr 4:72,792,252...73,174,179
JBrowse link
thiamine pyrophosphate binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC141220.4 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr17:76,306,649...76,374,507 JBrowse link
G Dhtkd1 dehydrogenase E1 and transketolase domain containing 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:76,306,585...76,358,058
Ensembl chr17:76,306,585...76,358,058
JBrowse link
G Hacl1 2-hydroxyacyl-CoA lyase 1 enables IDA
IBA
ISO
PMID:10468558
PMID:21873635
(PMID:10468558), (PMID:21708296)
RGD PMID:10468558 PMID:21708296, PMID:10468558, PMID:21873635 RGD:708588, RGD:13792537 NCBI chr16:7,720,047...7,758,119
Ensembl chr16:7,714,465...7,758,189
JBrowse link
G Ilvbl ilvB acetolactate synthase like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:14,044,586...14,054,639
Ensembl chr 7:14,044,586...14,054,639
JBrowse link
G Ogdh oxoglutarate dehydrogenase enables ISO
ISS
(PMID:24495017)
GO_REF:0000024
RGD
UniProt
PMID:24495017 GO_REF:0000024 NCBI chr14:86,414,924...86,481,903
Ensembl chr14:86,414,949...86,613,327
JBrowse link
G Ogdhl oxoglutarate dehydrogenase L enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:8,497,495...8,523,552
Ensembl chr16:8,497,569...8,523,557
JBrowse link
G Tkt transketolase enables IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:16116031, PMID:21873635 RGD:1580394, RGD:13792537 NCBI chr16:6,609,670...6,634,608
Ensembl chr16:6,609,668...6,634,595
JBrowse link
G Tktl1 transketolase-like 1 enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:156,507,797...156,540,733
Ensembl chr  X:156,507,797...156,540,733
JBrowse link
G Tktl2 transketolase-like 2 enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:24,944,197...24,951,478
Ensembl chr16:24,949,425...24,951,612
JBrowse link
vitamin B6 binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scly selenocysteine lyase enables IDA PMID:20164179 CAFA PMID:20164179 RGD:12793035 NCBI chr 9:98,438,408...98,459,075
Ensembl chr 9:98,438,439...98,459,080
JBrowse link
vitamin D binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Calb1 calbindin 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:29,538,380...29,562,774
Ensembl chr 5:29,538,380...29,562,773
JBrowse link
G Comp cartilage oligomeric matrix protein IMP RGD PMID:12426368 RGD:1298777 NCBI chr16:20,798,437...20,807,070
Ensembl chr16:20,798,437...20,807,070
JBrowse link
G Gc GC, vitamin D binding protein enables TAS
IBA
IDA
PMID:21873635 RGD
GO_Central
PMID:9774468, PMID:21873635, PMID:49052 RGD:731145, RGD:13792537, RGD:2315532 NCBI chr14:20,267,023...20,302,577
Ensembl chr14:20,266,891...20,302,581
JBrowse link
G S100g S100 calcium binding protein G enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:33,442,820...33,445,714
Ensembl chr  X:33,443,186...33,445,709
JBrowse link
G Vdr vitamin D receptor IMP
IDA
RGD PMID:2829212, PMID:2829212 RGD:729973, RGD:729973 NCBI chr 7:139,344,452...139,394,138
Ensembl chr 7:139,342,063...139,394,166
JBrowse link
vitamin E binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afm afamin enables ISS
IBA
ISO
IEA
GO_REF:0000024
PMID:21873635
CHEBI:18145|CHEBI:18185 (PMID:12463752), (PMID:15952736)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:12463752 PMID:15952736, PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr14:19,078,678...19,132,212
Ensembl chr14:19,078,680...19,132,208
JBrowse link
G Ttpa alpha tocopherol transfer protein enables IDA
ISO
IBA
(MGI:5494336|PMID:23599266)
PMID:21873635
RGD PMID:23599266, PMID:1569384, PMID:21873635 MGI:5494336, RGD:1600437, RGD:13792537 NCBI chr 5:34,007,926...34,029,315
Ensembl chr 5:34,007,920...34,028,452
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19986
    binding 17016
      small molecule binding 2502
        vitamin binding 140
          L-ascorbic acid binding 20
          biotin binding 4
          cobalamin binding 9
          folic acid binding 14
          phosphopantetheine binding 1
          retinal binding + 16
          retinol binding + 11
          thiamine binding 1
          thiamine pyrophosphate binding 9
          vitamin B6 binding + 54
          vitamin D binding + 6
          vitamin E binding 2
paths to the root