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ONTOLOGY REPORT - ANNOTATIONS


Term:vitamin binding
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Accession:GO:0019842 term browser browse the term
Definition:Interacting selectively and non-covalently with a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.


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vitamin binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cblif cobalamin binding intrinsic factor JBrowse link 1 228,118,048 228,132,296 RGD:61608
G Ggcx gamma-glutamyl carboxylase JBrowse link 4 100,277,345 100,293,097 RGD:1582507
RGD:13792537
G Pank3 pantothenate kinase 3 JBrowse link 10 20,591,432 20,615,258 RGD:1624291
G Pygl glycogen phosphorylase L JBrowse link 6 92,597,759 92,643,734 RGD:1624291
G Ttpa alpha tocopherol transfer protein JBrowse link 5 34,007,926 34,029,315 RGD:730016
11-cis retinal binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Opn4 opsin 4 JBrowse link 16 10,943,353 10,966,602 RGD:1624291
RGD:1600115
G Opn5 opsin 5 JBrowse link 9 21,045,457 21,092,517 RGD:1624291
G Rho rhodopsin JBrowse link 4 147,832,136 147,837,298 RGD:1600115
G Rlbp1 retinaldehyde binding protein 1 JBrowse link 1 141,097,789 141,111,375 RGD:1624291
all-trans retinal binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide JBrowse link 2 243,702,035 243,720,063 RGD:1624291
all-trans-retinol binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rbp1 retinol binding protein 1 JBrowse link 8 106,449,321 106,470,842 RGD:1624291
RGD:1600115
biotin binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acaca acetyl-CoA carboxylase alpha JBrowse link 10 71,519,392 71,719,910 RGD:1601566
G Acacb acetyl-CoA carboxylase beta JBrowse link 12 48,127,149 48,238,969 RGD:1601566
G Hlcs holocarboxylase synthetase JBrowse link 11 34,357,372 34,537,798 RGD:1624291
G Pc pyruvate carboxylase JBrowse link 1 219,759,157 219,859,854 RGD:1601566
RGD:1600115
calcidiol binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gc GC, vitamin D binding protein JBrowse link 14 20,267,023 20,302,577 RGD:1600115
RGD:1624291
calcitriol binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:8158087
RGD:13792537
RGD:1624291
RGD:1600115
cobalamin binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cblif cobalamin binding intrinsic factor JBrowse link 1 228,118,048 228,132,296 RGD:1624372
RGD:1624291
RGD:1600115
G Cd320 CD320 molecule JBrowse link 7 18,700,445 18,706,244 RGD:1624291
G Cubn cubilin JBrowse link 17 80,584,921 80,807,181 RGD:1600115
G Lmbrd1 LMBR1 domain containing 1 JBrowse link 9 30,939,555 31,038,381 RGD:1600115
G Mmab metabolism of cobalamin associated B JBrowse link 12 47,920,712 47,935,438 RGD:1624291
G Mmut methylmalonyl-CoA mutase JBrowse link 9 23,323,934 23,352,144 RGD:1624291
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase JBrowse link 17 66,210,444 66,295,014 RGD:1359026
RGD:1600115
G Tcn2 transcobalamin 2 JBrowse link 14 84,173,992 84,189,299 RGD:1601485
RGD:1624291
RGD:1600115
folic acid binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhfr dihydrofolate reductase JBrowse link 2 21,931,887 21,958,927 RGD:1624291
G Dmgdh dimethylglycine dehydrogenase JBrowse link 2 23,289,376 23,370,360 RGD:1599787
RGD:7245485
G Folr1 folate receptor alpha JBrowse link 1 166,934,457 166,945,864 RGD:1358236
RGD:1624291
G Folr2 folate receptor beta JBrowse link 1 166,915,045 166,933,377 RGD:1624291
G Ftcd formimidoyltransferase cyclodeaminase JBrowse link 20 12,806,957 12,820,466 RGD:1600115
G Gnmt glycine N-methyltransferase JBrowse link 9 16,565,274 16,568,626 RGD:1545057
RGD:7242951
G Izumo1r IZUMO1 receptor, JUNO JBrowse link 8 13,416,418 13,418,907 RGD:1624291
G Mthfs methenyltetrahydrofolate synthetase JBrowse link 8 96,564,877 96,614,386 RGD:1624291
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase JBrowse link 17 66,210,444 66,295,014 RGD:1601423
G Sardh sarcosine dehydrogenase JBrowse link 3 5,737,203 5,802,153 RGD:7245485
G Slc19a1 solute carrier family 19 member 1 JBrowse link 20 12,334,675 12,354,517 RGD:735239
RGD:13792537
G Slc46a1 solute carrier family 46 member 1 JBrowse link 10 65,728,508 65,741,708 RGD:1600115
G Tyms thymidylate synthetase JBrowse link 9 121,918,875 121,931,564 RGD:2317419
L-ascorbic acid binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07004992.1 RGD:1600115
G Dbh dopamine beta-hydroxylase JBrowse link 3 5,709,236 5,731,895 RGD:1600115
G Egln1 egl-9 family hypoxia-inducible factor 1 JBrowse link 19 57,660,194 57,701,158 RGD:1600115
G Egln2 egl-9 family hypoxia-inducible factor 2 JBrowse link 1 83,969,456 83,977,665 RGD:1600115
G Egln3 egl-9 family hypoxia-inducible factor 3 JBrowse link 6 75,050,329 75,075,795 RGD:1600115
G Ogfod1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 JBrowse link 19 11,425,301 11,451,085 RGD:1600115
G Ogfod2 2-oxoglutarate and iron-dependent oxygenase domain containing 2 JBrowse link 12 37,907,130 37,910,446 RGD:1600115
G Ogfod3 2-oxoglutarate and iron-dependent oxygenase domain containing 3 JBrowse link 10 110,378,533 110,406,377 RGD:1600115
G P3h1 prolyl 3-hydroxylase 1 JBrowse link 5 138,279,597 138,294,280 RGD:1600115
G P3h2 prolyl 3-hydroxylase 2 JBrowse link 11 78,028,885 78,169,746 RGD:1600115
G P3h3 prolyl 3-hydroxylase 3 JBrowse link 4 157,359,331 157,375,186 RGD:1600115
G P4ha1 prolyl 4-hydroxylase subunit alpha 1 JBrowse link 20 28,920,616 28,972,576 RGD:1600115
G P4ha2 prolyl 4-hydroxylase subunit alpha 2 JBrowse link 10 39,435,227 39,464,134 RGD:1600115
G P4ha3 prolyl 4-hydroxylase subunit alpha 3 JBrowse link 1 165,295,835 165,330,922 RGD:1600115
G P4htm prolyl 4-hydroxylase, transmembrane JBrowse link 8 117,364,895 117,383,275 RGD:1600115
G Pam peptidylglycine alpha-amidating monooxygenase JBrowse link 9 111,028,543 111,177,588 RGD:1600115
G Phyh phytanoyl-CoA 2-hydroxylase JBrowse link 17 77,287,580 77,304,482 RGD:1600115
G Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 JBrowse link 5 164,720,629 164,747,071 RGD:1599090
RGD:1600115
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 JBrowse link 8 99,977,334 100,059,736 RGD:1600115
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 JBrowse link 12 22,716,421 22,726,982 RGD:1600115
phosphopantetheine binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fasn fatty acid synthase JBrowse link 10 109,987,735 110,005,901 RGD:1600115
pyridoxal binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pdxk pyridoxal kinase JBrowse link 20 10,930,651 10,952,194 RGD:2303024
pyridoxal phosphate binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07028989.1 RGD:1600115
G Aadat aminoadipate aminotransferase JBrowse link 16 32,832,001 32,868,680 RGD:1600115
G Abat 4-aminobutyrate aminotransferase JBrowse link 10 7,093,406 7,200,439 RGD:1624291
RGD:13792537
RGD:1600115
G Accs 1-aminocyclopropane-1-carboxylate synthase JBrowse link 3 82,742,830 82,757,273 RGD:1600115
G Accsl 1-aminocyclopropane-1-carboxylate synthase-like JBrowse link 3 82,762,861 82,777,814 RGD:1600115
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase JBrowse link 9 100,281,339 100,291,292 RGD:1624291
G Agxt2 alanine-glyoxylate aminotransferase 2 JBrowse link 2 60,337,667 60,379,144 RGD:1600115
G Alas1 5'-aminolevulinate synthase 1 JBrowse link 8 114,927,704 114,941,038 RGD:1600115
G Alas2 5'-aminolevulinate synthase 2 JBrowse link X 23,167,576 23,187,356 RGD:1600115
G Alb albumin JBrowse link 14 19,176,275 19,191,793 RGD:1600115
RGD:1624291
G Cbs cystathionine beta synthase JBrowse link 20 10,361,987 10,386,663 RGD:1359025
RGD:13792537
RGD:1624291
RGD:1600115
G Csad cysteine sulfinic acid decarboxylase JBrowse link 7 143,781,520 143,810,880 RGD:1600115
G Cth cystathionine gamma-lyase JBrowse link 2 264,266,959 264,293,040 RGD:1359025
RGD:13792537
RGD:1624291
RGD:1600115
G Ddc dopa decarboxylase JBrowse link 14 91,905,919 91,996,816 RGD:727686
RGD:1600115
RGD:4139896
G Etnppl ethanolamine-phosphate phospho-lyase JBrowse link 2 235,738,377 235,760,351 RGD:1600115
G Gad1 glutamate decarboxylase 1 JBrowse link 3 56,861,440 56,902,139 RGD:6480263
RGD:1600115
G Gad2 glutamate decarboxylase 2 JBrowse link 17 89,171,576 89,234,770 RGD:6480263
G Gcat glycine C-acetyltransferase JBrowse link 7 120,263,068 120,269,365 RGD:1600115
G Gldc glycine decarboxylase JBrowse link 1 248,295,140 248,377,122 RGD:1642728
RGD:13792537
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link 1 263,246,248 263,269,762 RGD:1600115
G Got1l1 glutamic-oxaloacetic transaminase 1-like 1 JBrowse link 16 69,022,756 69,035,507 RGD:1600115
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link 19 9,587,637 9,613,323 RGD:1582383
RGD:2289396
G Gpt glutamic--pyruvic transaminase JBrowse link 7 117,759,083 117,761,932 RGD:1625222
G Gpt2 glutamic--pyruvic transaminase 2 JBrowse link 19 22,599,003 22,633,529 RGD:1600115
G Hdc histidine decarboxylase JBrowse link 3 119,057,524 119,075,599 RGD:2303726
RGD:1600115
RGD:2303735
RGD:2303734
RGD:2303733
RGD:2303728
RGD:2303727
G Kyat1 kynurenine aminotransferase 1 JBrowse link 3 8,752,289 8,785,617 RGD:1600115
G Kyat3 kynurenine aminotransferase 3 JBrowse link 2 248,644,473 248,690,289 RGD:1600115
G Kynu kynureninase JBrowse link 3 28,416,926 28,566,939 RGD:2290547
G LOC100910481 MOSC domain-containing protein 2, mitochondrial-like RGD:1600115
G LOC103690164 5-phosphohydroxy-L-lysine phospho-lyase JBrowse link 10 37,032,035 37,054,347 RGD:1600115
G LOC103691744 cystathionine gamma-lyase JBrowse link 2 264,747,068 264,765,112 RGD:1600115
G Mocos molybdenum cofactor sulfurase JBrowse link 18 16,590,086 16,636,312 RGD:1600115
G Mtarc1 mitochondrial amidoxime reducing component 1 JBrowse link 13 102,693,679 102,724,120 RGD:1600115
G Mtarc2 mitochondrial amidoxime reducing component 2 JBrowse link 13 102,724,266 102,755,511 RGD:1600115
G Nfs1 NFS1 cysteine desulfurase JBrowse link 3 151,665,813 151,688,151 RGD:1600115
G Oat ornithine aminotransferase JBrowse link 1 204,562,289 204,582,070 RGD:13792537
G Pdxdc1 pyridoxal-dependent decarboxylase domain containing 1 JBrowse link 10 3,232,794 3,321,438 RGD:1600115
G Pdxk pyridoxal kinase JBrowse link 20 10,930,651 10,952,194 RGD:1624291
G Phykpl 5-phosphohydroxy-L-lysine phospho-lyase JBrowse link 10 34,938,661 34,960,661 RGD:1600115
G Plpbp pyridoxal phosphate binding protein JBrowse link 16 69,164,654 69,176,245 RGD:13792537
G Pnpo pyridoxamine 5'-phosphate oxidase JBrowse link 10 84,874,926 84,881,190 RGD:1624291
G Pygb glycogen phosphorylase B JBrowse link 3 146,581,063 146,629,504 RGD:1600115
RGD:13792537
G Pygl glycogen phosphorylase L JBrowse link 6 92,597,759 92,643,734 RGD:13792537
G Pygm glycogen phosphorylase, muscle associated JBrowse link 1 221,756,325 221,771,142 RGD:1599897
RGD:13792537
RGD:1600115
G Sds serine dehydratase JBrowse link 12 41,620,429 41,627,741 RGD:1600115
RGD:1624291
G Sgpl1 sphingosine-1-phosphate lyase 1 JBrowse link 20 30,699,936 30,769,178 RGD:1600115
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link 10 47,030,813 47,059,216 RGD:1359815
RGD:13792537
RGD:1624291
RGD:2300383
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:1359815
RGD:13792537
RGD:1624291
RGD:2300383
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 JBrowse link 17 11,856,525 11,895,566 RGD:1600115
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 JBrowse link 6 111,334,408 111,417,960 RGD:1600115
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 JBrowse link 3 132,560,437 132,689,313 RGD:1600115
G Srr serine racemase JBrowse link 10 61,756,138 61,772,327 RGD:2302218
RGD:13792537
RGD:1624291
RGD:8554326
G Tat tyrosine aminotransferase JBrowse link 19 41,675,639 41,686,195 RGD:1600115
G Thnsl2 threonine synthase-like 2 JBrowse link 4 98,976,559 98,997,187 RGD:1624291
RGD:13792537
retinal binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akr1b10 aldo-keto reductase family 1 member B10 JBrowse link 4 61,813,265 61,830,371 RGD:6903952
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 JBrowse link 8 77,640,234 77,719,488 RGD:724800
G Crabp1 cellular retinoic acid binding protein 1 JBrowse link 8 59,344,097 59,352,135 RGD:1600115
G Crabp2 cellular retinoic acid binding protein 2 JBrowse link 2 187,322,416 187,326,794 RGD:1600115
G Rbp1 retinol binding protein 1 JBrowse link 8 106,449,321 106,470,842 RGD:1600115
G Rbp2 retinol binding protein 2 JBrowse link 8 106,479,253 106,527,726 RGD:1600115
G Rbp4 retinol binding protein 4 JBrowse link 1 256,806,476 256,813,678 RGD:1600115
G Rho rhodopsin JBrowse link 4 147,832,136 147,837,298 RGD:6893558
RGD:6893595
G Stra6 signaling receptor and transporter of retinol STRA6 JBrowse link 8 62,925,364 62,944,438 RGD:1600115
retinol binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide JBrowse link 2 243,702,035 243,720,063 RGD:1624291
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide JBrowse link 2 243,500,540 243,516,865 RGD:631904
RGD:1624291
RGD:1600115
G Crabp1 cellular retinoic acid binding protein 1 JBrowse link 8 59,344,097 59,352,135 RGD:1600115
G Crabp2 cellular retinoic acid binding protein 2 JBrowse link 2 187,322,416 187,326,794 RGD:1600115
G Lrat lecithin retinol acyltransferase JBrowse link 2 181,896,304 181,905,366 RGD:1599831
RGD:1599829
RGD:1599832
G Rbp1 retinol binding protein 1 JBrowse link 8 106,449,321 106,470,842 RGD:6484697
RGD:6893656
RGD:6484735
G Rbp2 retinol binding protein 2 JBrowse link 8 106,479,253 106,527,726 RGD:729693
RGD:6893656
RGD:6484697
G Rbp3 retinol binding protein 3 JBrowse link 16 10,277,775 10,286,243 RGD:6893658
RGD:13792537
G Rbp4 retinol binding protein 4 JBrowse link 1 256,806,476 256,813,678 RGD:6484695
RGD:1624291
RGD:11567252
G Stra6 signaling receptor and transporter of retinol STRA6 JBrowse link 8 62,925,364 62,944,438 RGD:1600115
riboflavin binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rtbdn retbindin JBrowse link 19 26,065,784 26,073,194 RGD:1624291
RGD:13792537
thiamine binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tpk1 thiamin pyrophosphokinase 1 JBrowse link 4 72,792,252 73,174,179 RGD:1600115
thiamine pyrophosphate binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC141220.4 RGD:1600115
G Dhtkd1 dehydrogenase E1 and transketolase domain containing 1 JBrowse link 17 76,306,585 76,358,058 RGD:1600115
G Hacl1 2-hydroxyacyl-CoA lyase 1 JBrowse link 16 7,720,047 7,758,119 RGD:708588
RGD:13792537
RGD:1624291
G Ilvbl ilvB acetolactate synthase like JBrowse link 7 14,044,586 14,054,639 RGD:1600115
G LOC103693780 2-oxoglutarate dehydrogenase, mitochondrial-like JBrowse link 14 86,599,906 86,614,963 RGD:1600115
G Ogdh oxoglutarate dehydrogenase JBrowse link 14 86,414,924 86,481,903 RGD:1600115
RGD:1624291
G Ogdhl oxoglutarate dehydrogenase-like JBrowse link 16 8,497,495 8,523,552 RGD:1600115
G Tkt transketolase JBrowse link 16 6,609,670 6,634,608 RGD:1580394
vitamin B6 binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Scly selenocysteine lyase JBrowse link 9 98,438,408 98,459,075 RGD:12793035
vitamin D binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Calb1 calbindin 1 JBrowse link 5 29,538,380 29,562,774 RGD:1600115
G Comp cartilage oligomeric matrix protein JBrowse link 16 20,798,437 20,807,070 RGD:1298777
G Gc GC, vitamin D binding protein JBrowse link 14 20,267,023 20,302,577 RGD:731145
RGD:13792537
RGD:2315532
G S100g S100 calcium binding protein G JBrowse link X 33,442,820 33,445,714 RGD:1600115
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:729973
RGD:13792537
vitamin E binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Afm afamin JBrowse link 14 19,078,678 19,132,212 RGD:1600115
RGD:13792537
RGD:1624291
G Ttpa alpha tocopherol transfer protein JBrowse link 5 34,007,926 34,029,315 RGD:1600437
RGD:13792537
RGD:1624291

Term paths to the root
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Term Annotations click to browse term
  molecular_function 19526
    binding 15909
      small molecule binding 2591
        vitamin binding 135
          L-ascorbic acid binding 20
          biotin binding 4
          cobalamin binding 8
          folic acid binding 13
          phosphopantetheine binding 1
          pyrroloquinoline quinone binding 0
          retinal binding + 13
          retinol binding + 10
          riboflavin binding 1
          thiamine binding 1
          thiamine pyrophosphate binding 8
          vitamin B6 binding + 55
          vitamin D binding + 5
          vitamin E binding 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.