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ONTOLOGY REPORT - ANNOTATIONS


Term:pyridoxal phosphate binding
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Accession:GO:0030170 term browser browse the term
Definition:Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.


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pyridoxal phosphate binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028989.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr10:1,622,573...1,674,701 JBrowse link
G Aadat aminoadipate aminotransferase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:32,832,001...32,868,680
Ensembl chr16:32,832,061...32,868,702
JBrowse link
G Abat 4-aminobutyrate aminotransferase enables ISS
ISO
IBA
GO_REF:0000024
(PMID:6470007)
(PMID:15650327)
PMID:21873635
UniProt
RGD
PMID:6470007 PMID:15650327, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:7,093,406...7,200,439
Ensembl chr10:7,093,405...7,200,499
JBrowse link
G Accs 1-aminocyclopropane-1-carboxylate synthase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:82,742,830...82,757,273
Ensembl chr 3:82,742,831...82,757,204
JBrowse link
G Accsl 1-aminocyclopropane-1-carboxylate synthase-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:82,762,861...82,777,814
Ensembl chr 3:82,762,862...82,777,814
JBrowse link
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase enables ISO (PMID:15802217), (PMID:17696873), (PMID:20133649) RGD PMID:15802217 PMID:17696873 PMID:20133649 NCBI chr 9:100,281,339...100,291,292
Ensembl chr 9:100,281,339...100,291,291
JBrowse link
G Agxt2 alanine-glyoxylate aminotransferase 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:60,337,667...60,379,144
Ensembl chr 2:60,337,667...60,379,420
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 enables IEA GO_REF:0000104
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr 8:114,927,704...114,941,038
Ensembl chr 8:114,927,722...114,940,177
JBrowse link
G Alas2 5'-aminolevulinate synthase 2 enables IEA GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chr  X:23,167,576...23,187,356
Ensembl chr  X:23,167,696...23,187,341
JBrowse link
G Alb albumin enables ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:16201370)
UniProt
Ensembl
RGD
PMID:16201370 GO_REF:0000024 GO_REF:0000107 NCBI chr14:19,176,275...19,191,793
Ensembl chr14:19,176,277...19,191,863
JBrowse link
G Cbs cystathionine beta synthase enables TAS
ISS
ISO
IBA
GO_REF:0000024
(PMID:18776696), (PMID:7929220)
PMID:21873635
UniProt
RGD
PMID:7929220 PMID:18776696, PMID:10801907, PMID:21873635 GO_REF:0000024, RGD:1359025, RGD:13792537 NCBI chr20:10,361,987...10,386,663
Ensembl chr20:10,361,988...10,386,751
JBrowse link
G Csad cysteine sulfinic acid decarboxylase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:143,781,520...143,810,880
Ensembl chr 7:143,781,702...143,793,970
JBrowse link
G Cth cystathionine gamma-lyase enables TAS
ISO
IBA
IEA
ISS
(PMID:10212249), (PMID:19019829)
PMID:21873635
GO_REF:0000002
GO_REF:0000024
RGD
InterPro
UniProt
PMID:10212249 PMID:19019829, PMID:10801907, PMID:21873635 GO_REF:0000002 GO_REF:0000024, RGD:1359025, RGD:13792537 NCBI chr 2:264,266,959...264,293,040
Ensembl chr 2:264,266,984...264,293,046
JBrowse link
G Ddc dopa decarboxylase enables TAS
IEA
IDA
GO_REF:0000002 InterPro PMID:7567987, PMID:8422386 GO_REF:0000002, RGD:727686, RGD:4139896 NCBI chr14:91,905,919...91,996,816
Ensembl chr14:91,905,919...91,996,774
JBrowse link
G Etnppl ethanolamine-phosphate phospho-lyase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:235,738,377...235,760,351
Ensembl chr 2:235,738,416...235,760,352
JBrowse link
G Gad1 glutamate decarboxylase 1 enables IDA
IEA
GO_REF:0000002 InterPro PMID:1880546 GO_REF:0000002, RGD:6480263 NCBI chr 3:56,861,440...56,902,139
Ensembl chr 3:56,861,396...56,902,157
JBrowse link
G Gad2 glutamate decarboxylase 2 IDA RGD PMID:1880546 RGD:6480263 NCBI chr17:89,171,576...89,234,770
Ensembl chr17:89,171,250...89,238,040
JBrowse link
G Gcat glycine C-acetyltransferase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:120,263,068...120,269,365
Ensembl chr 7:120,263,054...120,269,451
JBrowse link
G Gldc glycine decarboxylase enables IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:6778858, PMID:21873635 RGD:1642728, RGD:13792537 NCBI chr 1:248,295,140...248,377,122
Ensembl chr 1:248,297,331...248,377,093
JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:263,246,248...263,269,762
Ensembl chr 1:263,246,248...263,269,762
JBrowse link
G Got1l1 glutamic-oxaloacetic transaminase 1-like 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:69,022,756...69,035,507
Ensembl chr16:69,022,784...69,028,179
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 IDA
IMP
RGD PMID:14522984, PMID:12686151 RGD:1582383, RGD:2289396 NCBI chr19:9,587,637...9,613,323
Ensembl chr19:9,587,653...9,613,340
JBrowse link
G Gpt glutamic--pyruvic transaminase NAS RGD PMID:2043642 RGD:1625222 NCBI chr 7:117,759,083...117,761,932
Ensembl chr 7:117,759,083...117,761,931
JBrowse link
G Gpt2 glutamic--pyruvic transaminase 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:22,599,003...22,633,529
Ensembl chr19:22,590,881...22,632,071
JBrowse link
G Hdc histidine decarboxylase enables IDA
IEA
GO_REF:0000002 InterPro PMID:4449071, PMID:9525922, PMID:12204113, PMID:14622303, PMID:7075603, PMID:5898 GO_REF:0000002, RGD:2303726, RGD:2303735, RGD:2303734, RGD:2303733, RGD:2303728, RGD:2303727 NCBI chr 3:119,057,524...119,075,599
Ensembl chr 3:119,057,517...119,075,619
JBrowse link
G Kyat1 kynurenine aminotransferase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:8,752,289...8,785,617
Ensembl chr 3:8,752,625...8,766,433
JBrowse link
G Kyat3 kynurenine aminotransferase 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:248,644,473...248,690,289
Ensembl chr 2:248,649,441...248,690,089
JBrowse link
G Kynu kynureninase IDA RGD PMID:7451426 RGD:2290547 NCBI chr 3:28,416,926...28,566,939
Ensembl chr 3:28,416,954...28,566,928
JBrowse link
G LOC100910481 MOSC domain-containing protein 2, mitochondrial-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002
G LOC103690164 5-phosphohydroxy-L-lysine phospho-lyase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:37,032,035...37,054,347
Ensembl chr10:37,032,043...37,051,519
Ensembl chr10:37,032,043...37,051,519
JBrowse link
G Mocos molybdenum cofactor sulfurase enables IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr18:16,590,086...16,636,312
Ensembl chr18:16,590,197...16,636,084
JBrowse link
G Mtarc1 mitochondrial amidoxime reducing component 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:102,693,679...102,724,120
Ensembl chr13:102,698,546...102,721,218
JBrowse link
G Mtarc2 mitochondrial amidoxime reducing component 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:102,724,266...102,755,511
Ensembl chr13:102,724,348...102,756,174
JBrowse link
G Nfs1 NFS1 cysteine desulfurase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:151,665,813...151,688,151
Ensembl chr 3:151,665,814...151,688,149
Ensembl chr 3:151,665,814...151,688,149
JBrowse link
G Oat ornithine aminotransferase enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:204,562,289...204,582,070
Ensembl chr 1:204,562,289...204,582,070
JBrowse link
G Pdxdc1 pyridoxal-dependent decarboxylase domain containing 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:3,232,794...3,321,438
Ensembl chr10:3,232,794...3,321,412
JBrowse link
G Phykpl 5-phosphohydroxy-L-lysine phospho-lyase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:34,938,661...34,960,661
Ensembl chr10:34,938,667...34,960,840
JBrowse link
G Plpbp pyridoxal phosphate binding protein enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:69,164,654...69,176,245
Ensembl chr16:69,163,577...69,176,036
JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase enables ISO (PMID:12824491) RGD PMID:12824491 NCBI chr10:84,874,926...84,881,190
Ensembl chr10:84,874,927...84,881,190
JBrowse link
G Psat1 phosphoserine aminotransferase 1 enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:233,124,089...233,145,941
Ensembl chr 1:233,124,092...233,145,941
JBrowse link
G Pygb glycogen phosphorylase B enables IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 3:146,581,063...146,629,504
Ensembl chr 3:146,582,752...146,634,535
JBrowse link
G Pygl glycogen phosphorylase L enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:92,597,759...92,643,734
Ensembl chr 6:92,597,706...92,643,847
JBrowse link
G Pygm glycogen phosphorylase, muscle associated enables IDA
IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:11692172, PMID:21873635 GO_REF:0000002, RGD:1599897, RGD:13792537 NCBI chr 1:221,756,325...221,771,142
Ensembl chr 1:221,756,286...221,771,143
JBrowse link
G Sds serine dehydratase enables IEA
ISO
GO_REF:0000107
(PMID:15689518)
Ensembl
RGD
PMID:15689518 GO_REF:0000107 NCBI chr12:41,620,429...41,627,741
Ensembl chr12:41,620,393...41,627,741
JBrowse link
G Sgpl1 sphingosine-1-phosphate lyase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:30,699,936...30,769,178
Ensembl chr20:30,699,872...30,749,940
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 enables TAS
ISO
IBA
IDA
(PMID:17482557), (PMID:24698160)
PMID:21873635
RGD PMID:17482557 PMID:24698160, PMID:15671219, PMID:21873635, PMID:3110140 RGD:1359815, RGD:13792537, RGD:2300383 NCBI chr10:47,030,813...47,059,216
Ensembl chr10:47,031,050...47,059,216
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 enables TAS
ISO
IBA
IDA
(PMID:25619277)
PMID:21873635
RGD PMID:25619277, PMID:15671219, PMID:21873635, PMID:3110140 RGD:1359815, RGD:13792537, RGD:2300383 NCBI chr 7:70,824,718...70,829,822
Ensembl chr 7:70,824,715...70,829,815
JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:11,856,525...11,895,566
Ensembl chr17:11,856,525...11,895,566
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:111,334,408...111,417,960
Ensembl chr 6:111,339,136...111,417,954
JBrowse link
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:132,560,437...132,689,313
Ensembl chr 3:132,560,506...132,692,737
JBrowse link
G Srr serine racemase enables IDA
ISO
IBA
(MGI:1347751|PMID:10557334)
PMID:20106978
(PMID:20106978)
PMID:21873635
RGD PMID:10557334 PMID:20106978, PMID:9892700, PMID:20106978, PMID:21873635 MGI:1347751, RGD:2302218, RGD:8554326, RGD:13792537 NCBI chr10:61,756,138...61,772,327
Ensembl chr10:61,756,138...61,772,293
JBrowse link
G Tat tyrosine aminotransferase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:41,675,639...41,686,195
Ensembl chr19:41,675,355...41,686,229
JBrowse link
G Thnsl2 threonine synthase-like 2 enables IBA
ISO
PMID:21873635
(MGI:3690523|PMID:17034760)
RGD PMID:17034760, PMID:21873635 MGI:3690523, RGD:13792537 NCBI chr 4:98,976,559...98,997,187
Ensembl chr 4:98,976,550...98,995,590
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20083
    binding 17057
      ion binding 5274
        anion binding 2377
          pyridoxal phosphate binding 53
Path 2
Term Annotations click to browse term
  molecular_function 20083
    binding 17057
      small molecule binding 2525
        vitamin binding 142
          vitamin B6 binding 55
            pyridoxal phosphate binding 53
paths to the root