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ONTOLOGY REPORT - ANNOTATIONS


Term:pyridoxal phosphate binding
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Accession:GO:0030170 term browser browse the term
Definition:Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.


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pyridoxal phosphate binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07028989.1 RGD:1600115
G Aadat aminoadipate aminotransferase JBrowse link 16 32,832,001 32,868,680 RGD:1600115
G Abat 4-aminobutyrate aminotransferase JBrowse link 10 7,093,406 7,200,439 RGD:1624291
RGD:13792537
RGD:1600115
G Accs 1-aminocyclopropane-1-carboxylate synthase JBrowse link 3 82,742,830 82,757,273 RGD:1600115
G Accsl 1-aminocyclopropane-1-carboxylate synthase-like JBrowse link 3 82,762,861 82,777,814 RGD:1600115
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase JBrowse link 9 100,281,339 100,291,292 RGD:1624291
G Agxt2 alanine-glyoxylate aminotransferase 2 JBrowse link 2 60,337,667 60,379,144 RGD:1600115
G Alas1 5'-aminolevulinate synthase 1 JBrowse link 8 114,927,704 114,941,038 RGD:1600115
G Alas2 5'-aminolevulinate synthase 2 JBrowse link X 23,167,576 23,187,356 RGD:1600115
G Alb albumin JBrowse link 14 19,176,275 19,191,793 RGD:1600115
RGD:1624291
G Cbs cystathionine beta synthase JBrowse link 20 10,361,987 10,386,663 RGD:1359025
RGD:13792537
RGD:1624291
RGD:1600115
G Csad cysteine sulfinic acid decarboxylase JBrowse link 7 143,781,520 143,810,880 RGD:1600115
G Cth cystathionine gamma-lyase JBrowse link 2 264,266,959 264,293,040 RGD:1359025
RGD:13792537
RGD:1624291
RGD:1600115
G Ddc dopa decarboxylase JBrowse link 14 91,905,919 91,996,816 RGD:727686
RGD:1600115
RGD:4139896
G Etnppl ethanolamine-phosphate phospho-lyase JBrowse link 2 235,738,377 235,760,351 RGD:1600115
G Gad1 glutamate decarboxylase 1 JBrowse link 3 56,861,440 56,902,139 RGD:6480263
RGD:1600115
G Gad2 glutamate decarboxylase 2 JBrowse link 17 89,171,576 89,234,770 RGD:6480263
G Gcat glycine C-acetyltransferase JBrowse link 7 120,263,068 120,269,365 RGD:1600115
G Gldc glycine decarboxylase JBrowse link 1 248,295,140 248,377,122 RGD:1642728
RGD:13792537
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link 1 263,246,248 263,269,762 RGD:1600115
G Got1l1 glutamic-oxaloacetic transaminase 1-like 1 JBrowse link 16 69,022,756 69,035,507 RGD:1600115
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link 19 9,587,637 9,613,323 RGD:1582383
RGD:2289396
G Gpt glutamic--pyruvic transaminase JBrowse link 7 117,759,083 117,761,932 RGD:1625222
G Gpt2 glutamic--pyruvic transaminase 2 JBrowse link 19 22,599,003 22,633,529 RGD:1600115
G Hdc histidine decarboxylase JBrowse link 3 119,057,524 119,075,599 RGD:2303726
RGD:1600115
RGD:2303735
RGD:2303734
RGD:2303733
RGD:2303728
RGD:2303727
G Kyat1 kynurenine aminotransferase 1 JBrowse link 3 8,752,289 8,785,617 RGD:1600115
G Kyat3 kynurenine aminotransferase 3 JBrowse link 2 248,644,473 248,690,289 RGD:1600115
G Kynu kynureninase JBrowse link 3 28,416,926 28,566,939 RGD:2290547
G LOC100910481 MOSC domain-containing protein 2, mitochondrial-like RGD:1600115
G LOC103690164 5-phosphohydroxy-L-lysine phospho-lyase JBrowse link 10 37,032,035 37,054,347 RGD:1600115
G LOC103691744 cystathionine gamma-lyase JBrowse link 2 264,747,068 264,765,112 RGD:1600115
G Mocos molybdenum cofactor sulfurase JBrowse link 18 16,590,086 16,636,312 RGD:1600115
G Mtarc1 mitochondrial amidoxime reducing component 1 JBrowse link 13 102,693,679 102,724,120 RGD:1600115
G Mtarc2 mitochondrial amidoxime reducing component 2 JBrowse link 13 102,724,266 102,755,511 RGD:1600115
G Nfs1 NFS1 cysteine desulfurase JBrowse link 3 151,665,813 151,688,151 RGD:1600115
G Oat ornithine aminotransferase JBrowse link 1 204,562,289 204,582,070 RGD:13792537
G Pdxdc1 pyridoxal-dependent decarboxylase domain containing 1 JBrowse link 10 3,232,794 3,321,438 RGD:1600115
G Pdxk pyridoxal kinase JBrowse link 20 10,930,651 10,952,194 RGD:1624291
G Phykpl 5-phosphohydroxy-L-lysine phospho-lyase JBrowse link 10 34,938,661 34,960,661 RGD:1600115
G Plpbp pyridoxal phosphate binding protein JBrowse link 16 69,164,654 69,176,245 RGD:13792537
G Pnpo pyridoxamine 5'-phosphate oxidase JBrowse link 10 84,874,926 84,881,190 RGD:1624291
G Psat1 phosphoserine aminotransferase 1 JBrowse link 1 233,124,089 233,145,941 RGD:13792537
G Pygb glycogen phosphorylase B JBrowse link 3 146,581,063 146,629,504 RGD:1600115
RGD:13792537
G Pygl glycogen phosphorylase L JBrowse link 6 92,597,759 92,643,734 RGD:13792537
G Pygm glycogen phosphorylase, muscle associated JBrowse link 1 221,756,325 221,771,142 RGD:1599897
RGD:13792537
RGD:1600115
G Sds serine dehydratase JBrowse link 12 41,620,429 41,627,741 RGD:1600115
RGD:1624291
G Sgpl1 sphingosine-1-phosphate lyase 1 JBrowse link 20 30,699,936 30,769,178 RGD:1600115
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link 10 47,030,813 47,059,216 RGD:1359815
RGD:13792537
RGD:1624291
RGD:2300383
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:1359815
RGD:13792537
RGD:1624291
RGD:2300383
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 JBrowse link 17 11,856,525 11,895,566 RGD:1600115
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 JBrowse link 6 111,334,408 111,417,960 RGD:1600115
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 JBrowse link 3 132,560,437 132,689,313 RGD:1600115
G Srr serine racemase JBrowse link 10 61,756,138 61,772,327 RGD:2302218
RGD:13792537
RGD:1624291
RGD:8554326
G Tat tyrosine aminotransferase JBrowse link 19 41,675,639 41,686,195 RGD:1600115
G Thnsl2 threonine synthase-like 2 JBrowse link 4 98,976,559 98,997,187 RGD:1624291
RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19678
    binding 16040
      ion binding 5495
        anion binding 2885
          pyridoxal phosphate binding 55
Path 2
Term Annotations click to browse term
  molecular_function 19678
    binding 16040
      small molecule binding 2614
        vitamin binding 142
          vitamin B6 binding 56
            pyridoxal phosphate binding 55
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.