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ONTOLOGY REPORT - ANNOTATIONS


Term:pyridoxal phosphate binding
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Accession:GO:0030170 term browser browse the term
Definition:Binding to pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.



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pyridoxal phosphate binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07011698.1 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 2:153,941,154...153,942,719 JBrowse link
G Aadat aminoadipate aminotransferase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:29,509,392...29,544,332
Ensembl chr16:29,509,394...29,544,332
JBrowse link
G Abat 4-aminobutyrate aminotransferase enables ISS
ISO
IEA
IBA
GO_REF:0000024
(PMID:15650327)
(PMID:6470007)
GO_REF:0000002
GO_REF:0000118
GO_REF:0000033
UniProt
RGD
InterPro
TreeGrafter
GO_Central
PMID:6470007 PMID:15650327 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr10:6,996,688...7,092,835
Ensembl chr10:6,999,819...7,092,835
JBrowse link
G Accs 1-aminocyclopropane-1-carboxylate synthase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:79,805,254...79,820,830
Ensembl chr 3:79,806,587...79,820,835
JBrowse link
G Accsl 1-aminocyclopropane-1-carboxylate synthase-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:79,826,464...79,841,163
Ensembl chr 3:79,826,464...79,841,163
JBrowse link
G Agxt alanine--glyoxylate aminotransferase enables ISO (PMID:15802217), (PMID:17696873), (PMID:20133649) RGD PMID:15802217 PMID:17696873 PMID:20133649 NCBI chr 9:93,675,384...93,685,337
Ensembl chr 9:93,675,384...93,685,336
JBrowse link
G Agxt2 alanine-glyoxylate aminotransferase 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:59,336,252...59,377,664
Ensembl chr 2:59,336,283...59,377,926
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 enables IEA GO_REF:0000104
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr 8:106,876,514...106,889,917
Ensembl chr 8:106,876,514...106,889,917
JBrowse link
G Alas2 5'-aminolevulinate synthase 2 enables IEA GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chr  X:19,463,146...19,486,526
Ensembl chr  X:19,463,171...19,486,519
JBrowse link
G Alb albumin enables ISS
ISO
IEA
GO_REF:0000024
(PMID:16201370)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:16201370 GO_REF:0000024 GO_REF:0000107 NCBI chr14:17,607,397...17,622,814
Ensembl chr14:17,607,381...17,622,836
JBrowse link
G Cbs cystathionine beta synthase enables TAS
ISO
ISS
(PMID:18776696), (PMID:7929220)
GO_REF:0000024
RGD
UniProt
PMID:7929220 PMID:18776696 PMID:10801907 GO_REF:0000024, RGD:1359025 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764
JBrowse link
G Cisd1 CDGSH iron sulfur domain 1 enables ISS
ISO
GO_REF:0000024
(PMID:36194135)
UniProt
RGD
PMID:36194135 GO_REF:0000024 NCBI chr20:17,255,302...17,268,688
Ensembl chr20:17,255,151...17,284,924
JBrowse link
G Csad cysteine sulfinic acid decarboxylase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:133,308,571...133,337,914
Ensembl chr 7:133,308,574...133,337,615
JBrowse link
G Cth cystathionine gamma-lyase enables TAS
ISS
IEA
ISO
IBA
GO_REF:0000024
GO_REF:0000002
(PMID:10212249), (PMID:19019829)
GO_REF:0000107
GO_REF:0000118
GO_REF:0000033
UniProt
InterPro
RGD
Ensembl
TreeGrafter
GO_Central
PMID:10212249 PMID:19019829 PMID:10801907 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118, RGD:1359025 NCBI chr 2:246,975,888...247,002,234
Ensembl chr 2:246,975,894...247,002,234
JBrowse link
G Ddc dopa decarboxylase enables TAS
IDA
IEA
GO_REF:0000002 InterPro
RGD
PMID:7567987 PMID:8422386 GO_REF:0000002, RGD:727686, RGD:4139896 NCBI chr14:86,378,685...86,469,189
Ensembl chr14:86,378,685...86,469,208
JBrowse link
G ENSRNOG00000064101 enables IEA GO_REF:0000002
GO_REF:0000118
InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 Ensembl chr 3:9,679,203...9,680,482 JBrowse link
G ENSRNOG00000065410 enables IEA GO_REF:0000002
GO_REF:0000118
InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 Ensembl chr 2:178,497,468...178,499,169 JBrowse link
G Etnppl ethanolamine-phosphate phospho-lyase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:219,173,048...219,194,646
Ensembl chr 2:219,172,978...219,192,212
JBrowse link
G Gad1 glutamate decarboxylase 1 enables IDA
IEA
GO_REF:0000002 InterPro
RGD
PMID:1880546 GO_REF:0000002, RGD:6480263 NCBI chr 3:55,369,704...55,410,335
Ensembl chr 3:55,369,704...55,410,333
JBrowse link
G Gad2 glutamate decarboxylase 2 IDA RGD PMID:1880546 RGD:6480263 NCBI chr17:84,763,630...84,826,155
Ensembl chr17:84,763,628...84,826,155
JBrowse link
G Gadl1 glutamate decarboxylase-like 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:115,605,609...115,785,676
Ensembl chr 8:115,605,873...115,784,410
JBrowse link
G Gcat glycine C-acetyltransferase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:110,595,126...110,601,474
Ensembl chr 7:110,595,091...110,601,473
JBrowse link
G Gldc glycine decarboxylase enables IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:6778858 GO_REF:0000033, RGD:1642728 NCBI chr 1:227,883,249...227,962,119
Ensembl chr 1:227,883,249...227,962,097
JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:242,357,293...242,381,535
Ensembl chr 1:242,357,306...242,380,633
JBrowse link
G Got1l1 glutamic-oxaloacetic transaminase 1-like 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:64,860,308...64,873,656
Ensembl chr16:64,860,704...64,866,162
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 enables IDA
IMP
IEA
GO_REF:0000002
GO_REF:0000118
InterPro
TreeGrafter
RGD
PMID:14522984 PMID:12686151 GO_REF:0000002 GO_REF:0000118, RGD:1582383, RGD:2289396 NCBI chr19:9,174,304...9,199,995
Ensembl chr19:9,174,311...9,199,994
JBrowse link
G Got2-ps6 glutamic-oxaloacetic transaminase 2, pseudogene 6 enables IEA GO_REF:0000002
GO_REF:0000118
InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr  X:60,551,686...60,552,959
Ensembl chr  X:60,551,686...60,552,959
JBrowse link
G Gpt glutamic--pyruvic transaminase NAS RGD PMID:2043642 RGD:1625222 NCBI chr 7:108,416,646...108,419,495
Ensembl chr 7:108,416,642...108,419,494
JBrowse link
G Gpt2 glutamic--pyruvic transaminase 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:21,526,800...21,561,314
Ensembl chr19:21,517,621...21,560,610
JBrowse link
G Hdc histidine decarboxylase enables IDA
IEA
GO_REF:0000002 InterPro
RGD
PMID:4449071 PMID:5898 PMID:7075603 PMID:14622303 PMID:12204113 More... GO_REF:0000002, RGD:2303726, RGD:2303727, RGD:2303728, RGD:2303733, RGD:2303734, RGD:2303735 NCBI chr 3:113,847,256...113,865,334
Ensembl chr 3:113,847,260...113,865,341
JBrowse link
G Kyat1 kynurenine aminotransferase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:13,459,598...13,493,308
Ensembl chr 3:13,459,591...13,493,355
JBrowse link
G Kyat3 kynurenine aminotransferase 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:231,701,881...231,747,462
Ensembl chr 2:231,701,963...231,747,227
JBrowse link
G Kynu kynureninase enables IDA
IEA
GO_REF:0000104 UniProt
RGD
PMID:7451426 GO_REF:0000104, RGD:2290547 NCBI chr 3:27,778,646...27,929,470
Ensembl chr 3:27,778,772...27,929,488
JBrowse link
G Mocos molybdenum cofactor sulfurase enables IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr18:15,931,659...15,977,415
Ensembl chr18:15,931,654...15,977,187
JBrowse link
G Mtarc1 mitochondrial amidoxime reducing component 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:96,324,377...96,362,677
Ensembl chr13:96,339,757...96,397,796
JBrowse link
G Mtarc2 mitochondrial amidoxime reducing component 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:96,362,810...96,397,284 JBrowse link
G Nfs1 NFS1 cysteine desulfurase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:144,637,309...144,659,660
Ensembl chr 3:144,637,309...144,659,666
JBrowse link
G Oat ornithine aminotransferase enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:187,347,862...187,367,644
Ensembl chr 1:187,347,865...187,367,682
JBrowse link
G Pdxdc1 pyridoxal-dependent decarboxylase domain containing 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:2,025,056...2,113,712
Ensembl chr10:2,025,360...2,113,520
JBrowse link
G Phykpl 5-phosphohydroxy-L-lysine phospho-lyase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:35,839,965...35,863,631
Ensembl chr10:35,839,983...35,859,508
JBrowse link
G Plpbp pyridoxal phosphate binding protein enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:65,003,292...65,014,886
Ensembl chr16:65,002,223...65,014,886
JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase enables ISO (PMID:12824491) RGD PMID:12824491 NCBI chr10:81,924,584...81,930,844
Ensembl chr10:81,924,569...81,930,871
JBrowse link
G Psat1 phosphoserine aminotransferase 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:213,196,709...213,218,564
Ensembl chr 1:213,196,709...213,218,682
JBrowse link
G Pygb glycogen phosphorylase B enables IEA
IBA
GO_REF:0000002
GO_REF:0000033
GO_REF:0000118
InterPro
GO_Central
TreeGrafter
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:139,611,724...139,658,521
Ensembl chr 3:139,611,749...139,663,553
JBrowse link
G Pygl glycogen phosphorylase L enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:88,697,598...88,740,260
Ensembl chr 6:88,697,593...88,740,310
JBrowse link
G Pygm glycogen phosphorylase, muscle associated enables IDA
IEA
IBA
GO_REF:0000002
GO_REF:0000118
GO_REF:0000033
InterPro
TreeGrafter
GO_Central
RGD
PMID:11692172 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118, RGD:1599897 NCBI chr 1:203,690,550...203,705,369
Ensembl chr 1:203,690,533...203,705,368
JBrowse link
G Sds serine dehydratase enables IEA
ISO
GO_REF:0000107
(PMID:15689518)
Ensembl
RGD
PMID:15689518 GO_REF:0000107 NCBI chr12:36,083,226...36,090,540
Ensembl chr12:36,083,229...36,088,203
JBrowse link
G Sgpl1 sphingosine-1-phosphate lyase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:29,047,793...29,094,209
Ensembl chr20:29,047,796...29,094,084
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 enables TAS
IDA
ISO
IBA
(PMID:17482557), (PMID:24698160)
GO_REF:0000033
RGD
GO_Central
PMID:17482557 PMID:24698160 PMID:15671219 PMID:3110140 GO_REF:0000033, RGD:1359815, RGD:2300383 NCBI chr10:45,468,698...45,490,833
Ensembl chr10:45,468,700...45,497,820
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 enables TAS
IDA
ISO
IBA
(PMID:25619277)
GO_REF:0000033
RGD
GO_Central
PMID:25619277 PMID:15671219 PMID:3110140 GO_REF:0000033, RGD:1359815, RGD:2300383 NCBI chr 7:63,358,961...63,364,293
Ensembl chr 7:63,358,961...63,364,236
JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:11,877,249...11,916,295
Ensembl chr17:11,877,249...11,916,295
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:106,948,682...107,031,532
Ensembl chr 6:106,950,949...107,031,542
JBrowse link
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:126,847,878...126,978,010
Ensembl chr 3:126,847,878...126,978,010
JBrowse link
G Srr serine racemase enables IDA
ISO
IEA
IBA
(PMID:20106978)
GO_REF:0000002
GO_REF:0000118
GO_REF:0000033
(PMID:10557334)
RGD
InterPro
TreeGrafter
GO_Central
PMID:10557334 PMID:20106978 PMID:9892700 PMID:20106978 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118, RGD:2302218, RGD:8554326 NCBI chr10:59,769,563...59,786,688
Ensembl chr10:59,769,571...59,787,011
JBrowse link
G Tat tyrosine aminotransferase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:37,947,153...37,957,717
Ensembl chr19:37,947,112...37,958,031
JBrowse link
G Thnsl2 threonine synthase-like 2 enables IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
(PMID:17034760)
Ensembl
GO_Central
RGD
PMID:17034760 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:103,112,974...103,132,122
Ensembl chr 4:103,112,963...103,132,017
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20890
    binding 17950
      organic cyclic compound binding 6327
        vitamin B6 binding 58
          pyridoxal phosphate binding 56
Path 2
Term Annotations click to browse term
  molecular_function 20890
    binding 17950
      small molecule binding 6151
        ion binding 5860
          anion binding 2529
            pyridoxal phosphate binding 56
paths to the root