Accs (1-aminocyclopropane-1-carboxylate synthase) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Accs (1-aminocyclopropane-1-carboxylate synthase) Rattus norvegicus
Analyze
Symbol: Accs
Name: 1-aminocyclopropane-1-carboxylate synthase
RGD ID: 1309314
Description: Predicted to enable identical protein binding activity and transaminase activity. Predicted to be involved in amino acid metabolic process. Orthologous to human ACCS (1-aminocyclopropane-1-carboxylate synthase homolog (inactive)); INTERACTS WITH atrazine; bisphenol A; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1-aminocyclopropane-1-carboxylate synthase homolog; 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional); 1-aminocyclopropane-1-carboxylate synthase-like protein 1; LOC362168; RGD1309314; RGD1309314_predicted; similar to 2610203E10Rik protein; similar to 2610203E10Rik protein (predicted)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83100,261,940 - 100,276,400 (-)NCBIGRCr8
mRatBN7.2379,805,254 - 79,820,830 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl379,806,587 - 79,820,835 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx383,280,079 - 83,293,997 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0391,879,163 - 91,893,081 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0389,724,638 - 89,738,546 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0382,742,830 - 82,757,273 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl382,742,831 - 82,757,204 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0389,443,412 - 89,457,839 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4378,252,968 - 78,267,339 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1378,149,398 - 78,163,297 (-)NCBI
Celera379,008,693 - 79,022,696 (-)NCBICelera
Cytogenetic Map3q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11470512   PMID:16189514   PMID:25416956   PMID:31515488  


Genomics

Comparative Map Data
Accs
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83100,261,940 - 100,276,400 (-)NCBIGRCr8
mRatBN7.2379,805,254 - 79,820,830 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl379,806,587 - 79,820,835 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx383,280,079 - 83,293,997 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0391,879,163 - 91,893,081 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0389,724,638 - 89,738,546 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0382,742,830 - 82,757,273 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl382,742,831 - 82,757,204 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0389,443,412 - 89,457,839 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4378,252,968 - 78,267,339 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1378,149,398 - 78,163,297 (-)NCBI
Celera379,008,693 - 79,022,696 (-)NCBICelera
Cytogenetic Map3q31NCBI
ACCS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381144,066,270 - 44,084,237 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1144,065,925 - 44,084,237 (+)EnsemblGRCh38hg38GRCh38
GRCh371144,087,820 - 44,105,787 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361144,044,433 - 44,062,145 (+)NCBINCBI36Build 36hg18NCBI36
Celera1144,234,936 - 44,252,861 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1143,796,792 - 43,814,666 (+)NCBIHuRef
CHM1_11144,086,674 - 44,104,621 (+)NCBICHM1_1
T2T-CHM13v2.01144,221,451 - 44,239,584 (+)NCBIT2T-CHM13v2.0
Accs
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39293,663,812 - 93,680,343 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl293,663,812 - 93,680,288 (-)EnsemblGRCm39 Ensembl
GRCm38293,833,467 - 93,849,997 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl293,833,467 - 93,849,943 (-)EnsemblGRCm38mm10GRCm38
MGSCv37293,675,610 - 93,689,933 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36293,636,292 - 93,650,615 (-)NCBIMGSCv36mm8
Celera295,232,055 - 95,246,200 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map251.62NCBI
Accs
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554223,442,365 - 3,539,288 (-)NCBIChiLan1.0ChiLan1.0
ACCS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2946,280,055 - 46,298,784 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11146,284,806 - 46,311,742 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01144,026,501 - 44,044,928 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11144,521,434 - 44,539,355 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1144,522,797 - 44,699,447 (+)Ensemblpanpan1.1panPan2
ACCS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11845,141,870 - 45,159,255 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1845,142,586 - 45,159,255 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1843,809,564 - 43,826,755 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01845,807,539 - 45,824,608 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1845,646,913 - 45,823,492 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11845,275,423 - 45,289,455 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01844,836,614 - 44,853,646 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01845,574,755 - 45,591,996 (-)NCBIUU_Cfam_GSD_1.0
Accs
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494722,432,902 - 22,447,546 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365624,544,540 - 4,559,084 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACCS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl218,248,521 - 18,264,064 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1218,239,247 - 18,267,211 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2219,849,535 - 19,877,374 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACCS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,293,726 - 21,312,066 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,293,958 - 21,311,754 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038118,518,950 - 118,537,180 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Accs
111 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:80
Count of miRNA genes:62
Interacting mature miRNAs:66
Transcripts:ENSRNOT00000012214, ENSRNOT00000044121
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36113434889115068Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat

Markers in Region
RH141756  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2379,806,615 - 79,806,798 (+)MAPPERmRatBN7.2
mRatBN7.2379,806,615 - 79,806,897 (+)MAPPERmRatBN7.2
Rnor_6.0382,742,859 - 82,743,265NCBIRnor6.0
Rnor_6.0382,742,859 - 82,743,041NCBIRnor6.0
Rnor_5.0389,443,441 - 89,443,623UniSTSRnor5.0
Rnor_5.0389,443,441 - 89,443,847UniSTSRnor5.0
RGSC_v3.4378,252,999 - 78,253,181UniSTSRGSC3.4
Celera379,008,722 - 79,008,904UniSTS
RH 3.4 Map3687.1UniSTS
Cytogenetic Map3q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000012214   ⟹   ENSRNOP00000012214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl379,806,587 - 79,820,820 (-)Ensembl
Rnor_6.0 Ensembl382,743,155 - 82,757,204 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000044121   ⟹   ENSRNOP00000046777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl379,806,592 - 79,820,835 (-)Ensembl
Rnor_6.0 Ensembl382,742,831 - 82,756,953 (-)Ensembl
RefSeq Acc Id: NM_001267534   ⟹   NP_001254463
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,261,940 - 100,275,839 (-)NCBI
mRatBN7.2379,806,587 - 79,820,486 (-)NCBI
Rnor_6.0382,742,830 - 82,756,953 (-)NCBI
Rnor_5.0389,443,412 - 89,457,839 (-)NCBI
Celera379,008,693 - 79,022,696 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006234577   ⟹   XP_006234639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,261,940 - 100,275,989 (-)NCBI
mRatBN7.2379,805,254 - 79,820,636 (-)NCBI
Rnor_6.0382,743,146 - 82,757,098 (-)NCBI
Rnor_5.0389,443,412 - 89,457,839 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006234580   ⟹   XP_006234642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,261,940 - 100,275,744 (-)NCBI
mRatBN7.2379,805,254 - 79,820,403 (-)NCBI
Rnor_6.0382,743,146 - 82,756,855 (-)NCBI
Rnor_5.0389,443,412 - 89,457,839 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008762028   ⟹   XP_008760250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,261,940 - 100,276,400 (-)NCBI
mRatBN7.2379,805,254 - 79,820,830 (-)NCBI
Rnor_6.0382,743,146 - 82,757,271 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063283676   ⟹   XP_063139746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,262,721 - 100,276,400 (-)NCBI
RefSeq Acc Id: XM_063283677   ⟹   XP_063139747
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,261,940 - 100,268,653 (-)NCBI
RefSeq Acc Id: NP_001254463   ⟸   NM_001267534
- UniProtKB: A0A8J8YIP6 (UniProtKB/TrEMBL),   A6HNJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234639   ⟸   XM_006234577
- Peptide Label: isoform X1
- UniProtKB: A0A8J8YIP6 (UniProtKB/TrEMBL),   A6HNJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234642   ⟸   XM_006234580
- Peptide Label: isoform X1
- UniProtKB: A0A8J8YIP6 (UniProtKB/TrEMBL),   A6HNJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760250   ⟸   XM_008762028
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000012214   ⟸   ENSRNOT00000012214
Ensembl Acc Id: ENSRNOP00000046777   ⟸   ENSRNOT00000044121
RefSeq Acc Id: XP_063139747   ⟸   XM_063283677
- Peptide Label: isoform X3
- UniProtKB: A6HNJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139746   ⟸   XM_063283676
- Peptide Label: isoform X2
Protein Domains
Aminotransferase class I/classII large

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LXH1-F1-model_v2 AlphaFold F1LXH1 1-475 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692233
Promoter ID:EPDNEW_R2758
Type:single initiation site
Name:Accs_2
Description:1-aminocyclopropane-1-carboxylate synthase homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R2759  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0382,757,044 - 82,757,104EPDNEW
RGD ID:13692239
Promoter ID:EPDNEW_R2759
Type:initiation region
Name:Accs_1
Description:1-aminocyclopropane-1-carboxylate synthase homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R2758  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0382,757,249 - 82,757,309EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309314 AgrOrtholog
BioCyc Gene G2FUF-48663 BioCyc
Ensembl Genes ENSRNOG00000009199 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012214.8 UniProtKB/TrEMBL
  ENSRNOT00000044121.6 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7127848 IMAGE-MGC_LOAD
InterPro Aminotransferase_I/II UniProtKB/TrEMBL
  Ethylene_sulfur-biosynth UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major_dom UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major_sub1 UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major_sub2 UniProtKB/TrEMBL
KEGG Report rno:311218 UniProtKB/TrEMBL
MGC_CLONE MGC:95120 IMAGE-MGC_LOAD
NCBI Gene Accs ENTREZGENE
PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE-LIKE PROTEIN 1 UniProtKB/TrEMBL
  BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED UniProtKB/TrEMBL
Pfam Aminotran_1_2 UniProtKB/TrEMBL
PhenoGen Accs PhenoGen
PRINTS ACCSYNTHASE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009199 RatGTEx
Superfamily-SCOP PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
UniProt A0A8J8YIP6 ENTREZGENE, UniProtKB/TrEMBL
  A6HNJ5 ENTREZGENE, UniProtKB/TrEMBL
  A6HNJ6 ENTREZGENE, UniProtKB/TrEMBL
  F1LXH1_RAT UniProtKB/TrEMBL
  Q5XI27_RAT UniProtKB/TrEMBL
UniProt Secondary F7ETF2 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-06 Accs  1-aminocyclopropane-1-carboxylate synthase  Accs  1-aminocyclopropane-1-carboxylate synthase homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-11 Accs  1-aminocyclopropane-1-carboxylate synthase homolog  Accs  1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-26 Accs  1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)  RGD1309314_predicted  similar to 2610203E10Rik protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1309314_predicted  similar to 2610203E10Rik protein (predicted)  LOC362168_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362168_predicted  similar to 2610203E10Rik protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL