Accs (1-aminocyclopropane-1-carboxylate synthase homolog (inactive)) - Rat Genome Database

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Gene: Accs (1-aminocyclopropane-1-carboxylate synthase homolog (inactive)) Ictidomys tridecemlineatus
Analyze
Symbol: Accs
Name: 1-aminocyclopropane-1-carboxylate synthase homolog (inactive)
RGD ID: 12520892
Description: ENCODES a protein that exhibits 1-aminocyclopropane-1-carboxylate synthase activity (ortholog); identical protein binding (ortholog); INVOLVED IN amino acid metabolic process (inferred); biosynthetic process (inferred); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 1-aminocyclopropane-1-carboxylate synthase-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494722,432,902 - 22,447,546 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365624,544,540 - 4,559,084 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Accs
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494722,432,902 - 22,447,546 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365624,544,540 - 4,559,084 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACCS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381144,066,270 - 44,084,237 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1144,065,925 - 44,084,237 (+)EnsemblGRCh38hg38GRCh38
GRCh371144,087,820 - 44,105,787 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361144,044,433 - 44,062,145 (+)NCBINCBI36Build 36hg18NCBI36
Celera1144,234,936 - 44,252,861 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1143,796,792 - 43,814,666 (+)NCBIHuRef
CHM1_11144,086,674 - 44,104,621 (+)NCBICHM1_1
T2T-CHM13v2.01144,221,451 - 44,239,584 (+)NCBIT2T-CHM13v2.0
Accs
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39293,663,812 - 93,680,343 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl293,663,812 - 93,680,288 (-)EnsemblGRCm39 Ensembl
GRCm38293,833,467 - 93,849,997 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl293,833,467 - 93,849,943 (-)EnsemblGRCm38mm10GRCm38
MGSCv37293,675,610 - 93,689,933 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36293,636,292 - 93,650,615 (-)NCBIMGSCv36mm8
Celera295,232,055 - 95,246,200 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map251.62NCBI
Accs
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83100,261,940 - 100,276,400 (-)NCBIGRCr8
mRatBN7.2379,805,254 - 79,820,830 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl379,806,587 - 79,820,835 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx383,280,079 - 83,293,997 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0391,879,163 - 91,893,081 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0389,724,638 - 89,738,546 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0382,742,830 - 82,757,273 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl382,742,831 - 82,757,204 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0389,443,412 - 89,457,839 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4378,252,968 - 78,267,339 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1378,149,398 - 78,163,297 (-)NCBI
Celera379,008,693 - 79,022,696 (-)NCBICelera
Cytogenetic Map3q31NCBI
Accs
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554223,442,365 - 3,539,288 (-)NCBIChiLan1.0ChiLan1.0
ACCS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2946,280,055 - 46,298,784 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11146,284,806 - 46,311,742 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01144,026,501 - 44,044,928 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11144,521,434 - 44,539,355 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1144,522,797 - 44,699,447 (+)Ensemblpanpan1.1panPan2
ACCS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11845,141,870 - 45,159,255 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1845,142,586 - 45,159,255 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1843,809,564 - 43,826,755 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01845,807,539 - 45,824,608 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1845,646,913 - 45,823,492 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11845,275,423 - 45,289,455 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01844,836,614 - 44,853,646 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01845,574,755 - 45,591,996 (-)NCBIUU_Cfam_GSD_1.0
ACCS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl218,248,521 - 18,264,064 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1218,239,247 - 18,267,211 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2219,849,535 - 19,877,374 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACCS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,293,726 - 21,312,066 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,293,958 - 21,311,754 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038118,518,950 - 118,537,180 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013360607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013360607   ⟹   XP_013216061
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494722,432,902 - 22,447,546 (-)NCBI
SpeTri2.0NW_0049365624,544,540 - 4,559,084 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013216061 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000004003.3
  ENSSTOP00000026683.1
GenBank Protein KAG3285434 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013216061   ⟸   XM_013360607
- UniProtKB: I3M4A4 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Aminotransferase class I/classII


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004449 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004460.3 UniProtKB/TrEMBL
  ENSSTOT00000035126.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/TrEMBL
InterPro Aminotransferase_I/II UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_small UniProtKB/TrEMBL
NCBI Gene Accs ENTREZGENE
PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE-LIKE PROTEIN 1 UniProtKB/TrEMBL
  BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED UniProtKB/TrEMBL
Pfam Aminotran_1_2 UniProtKB/TrEMBL
PRINTS ACCSYNTHASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/TrEMBL
UniProt A0A287CZH4_ICTTR UniProtKB/TrEMBL
  I3M4A4 ENTREZGENE, UniProtKB/TrEMBL