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ONTOLOGY REPORT - ANNOTATIONS

Term:glycogen biosynthetic process
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Accession:GO:0005978 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Synonyms:exact_synonym: glycogen anabolism;   glycogen biosynthesis;   glycogen formation;   glycogen synthesis
 xref: MetaCyc:PWY-7900;   Reactome:R-HSA-3322077 "Glycogen synthesis"


show annotations for term's descendants           Sort by:
glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain involved_in IEA
ISO 		GO_REF:0000107
(PMID:18459129) 		Ensembl
RGD		 PMID:18459129 GO_REF:0000107 NCBI chr 2:245,518,693...245,542,864
Ensembl chr 2:245,518,693...245,542,864 		JBrowse link
G Agl amylo-alpha-1,6-glucosidase and 4-alpha-glucanotransferase involved_in IEA GO_REF:0000043
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 2:207,389,949...207,445,959
Ensembl chr 2:207,389,949...207,445,724 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 involved_in IMP
IEA 		PMID:10400692
GO_REF:0000043 		UniProt PMID:10400692 GO_REF:0000043, RGD:8553850 NCBI chr 6:137,534,810...137,555,131
Ensembl chr 6:137,535,390...137,552,610 		JBrowse link
G Akt2 AKT serine/threonine kinase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:92,004,705...92,061,420
Ensembl chr 1:92,014,859...92,061,420 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000107
MGI:2145264 (PMID:28536304)
MGI:6118039 (PMID:17118331), (PMID:18040046), (PMID:31042462)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:17118331 PMID:18040046 PMID:28536304 PMID:31042462 GO_REF:0000107 GO_REF:0000117 NCBI chr 1:7,547,369...7,673,449
Ensembl chr 1:7,547,342...7,669,604 		JBrowse link
G Gbe1 1,4-alpha-glucan branching enzyme 1 involved_in IDA
ISO
IEA
IBA 		MGI:4868492|MGI:5293612|MGI:5767122 (PMID:21075835), (PMID:21856731), (PMID:31042462)
GO_REF:0000002
GO_REF:0000107
GO_REF:0000033
(PMID:26199317) 		RGD
InterPro
Ensembl
GO_Central		 PMID:21075835 PMID:21856731 PMID:26199317 PMID:31042462 PMID:6449198 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107, RGD:1642743 NCBI chr11:22,181,194...22,446,640
Ensembl chr11:22,181,103...22,446,638 		JBrowse link
G Gck glucokinase IDA RGD PMID:17028192 RGD:1581879 NCBI chr14:84,999,019...85,041,098
Ensembl chr14:84,999,020...85,040,949 		JBrowse link
G Gyg1 glycogenin 1 involved_in IDA
ISO
IEA
IBA 		(PMID:35835870)
MGI:4364071 (PMID:33219378)
GO_REF:0000043
GO_REF:0000033
GO_REF:0000117
GO_REF:0000041 		RGD
UniProt
GO_Central		 PMID:33219378 PMID:35835870 PMID:8224611 PMID:10710493 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000117, RGD:2303736, RGD:2304070 NCBI chr 2:104,540,927...104,583,038
Ensembl chr 2:104,540,533...104,582,818 		JBrowse link
G Gys1 glycogen synthase 1 involved_in
acts_upstream_of_or_within 		IDA
ISO
IEA
IBA 		(PMID:35835870)
GO_REF:0000107
GO_REF:0000033
MGI:4432767 (PMID:17118331), (PMID:20300197), (PMID:21356517), (PMID:33219378)
MGI:3052742 (PMID:15282316)
GO_REF:0000117
GO_REF:0000043
GO_REF:0000002
GO_REF:0000041 		RGD
Ensembl
GO_Central
UniProt
InterPro		 PMID:15282316 PMID:17118331 PMID:20300197 PMID:21356517 PMID:33219378 More... GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117, RGD:2303748, RGD:1642743 NCBI chr 1:105,051,916...105,071,763
Ensembl chr 1:105,051,961...105,072,419 		JBrowse link
G Gys2 glycogen synthase 2 involved_in IDA
IBA
ISO
IEA 		GO_REF:0000033
MGI:4462836 (PMID:28483921), (PMID:31553910)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000002
GO_REF:0000043
(PMID:1731614), (PMID:9691087)
PMID:11415431
GO_REF:0000041 		GO_Central
RGD
UniProt
Ensembl
InterPro		 PMID:1731614 PMID:9691087 PMID:28483921 PMID:31553910 PMID:15138155 More... GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117, RGD:1582633, RGD:8554625, RGD:8554840, RGD:1642743, RGD:2304128 NCBI chr 4:177,096,063...177,137,236
Ensembl chr 4:177,096,063...177,137,236 		JBrowse link
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000107
MGI:1341085 (PMID:28536304)
MGI:3808349|MGI:5312923 (PMID:20538597), (PMID:31042462)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:20538597 PMID:28536304 PMID:31042462 GO_REF:0000107 GO_REF:0000117 NCBI chr17:17,880,570...17,883,411
Ensembl chr17:17,880,365...17,883,620 		JBrowse link
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 involved_in IEA
ISO
ISS 		GO_REF:0000107
UniProtKB:O54943 (PMID:20159955)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:20159955 GO_REF:0000024 GO_REF:0000107 NCBI chr10:84,224,599...84,231,812
Ensembl chr10:84,224,540...84,231,812 		JBrowse link
G Per2 period circadian regulator 2 involved_in ISS
ISO 		GO_REF:0000024
UniProtKB:Q3UV55 (PMID:20159955) 		UniProt
RGD		 PMID:20159955 GO_REF:0000024 NCBI chr 9:99,454,828...99,497,069
Ensembl chr 9:99,454,830...99,496,993 		JBrowse link
G Pgm2 phosphoglucomutase 2 involved_in IEA
ISO 		GO_REF:0000107
MGI:95909 (PMID:24265765) 		Ensembl
RGD		 PMID:24265765 GO_REF:0000107 NCBI chr14:44,519,906...44,553,420
Ensembl chr14:44,519,906...44,553,770 		JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA 		GO_REF:0000024
(PMID:9045612)
(PMID:10683377)
GO_REF:0000104 		UniProt
RGD		 PMID:9045612 PMID:10683377 GO_REF:0000024 GO_REF:0000104 NCBI chr 1:243,873,524...243,878,527
Ensembl chr 1:243,871,704...243,878,835 		JBrowse link
G Ptges3 prostaglandin E synthase 3 acts_upstream_of_or_within ISO MGI:3701300 (PMID:17438133) RGD PMID:17438133 NCBI chr 7:1,075,230...1,092,363
Ensembl chr 7:1,075,227...1,092,695 		JBrowse link
G Ugp2 UDP-glucose pyrophosphorylase 2 involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000041
(PMID:32286295)
(PMID:34330832)
GO_REF:0000107
(PMID:31820119) 		UniProt
RGD
Ensembl		 PMID:31820119 PMID:32286295 PMID:34330832 GO_REF:0000041 GO_REF:0000107 NCBI chr14:99,657,637...99,698,573
Ensembl chr14:99,657,639...99,698,002 		JBrowse link
glycogen biosynthetic process via UDP-glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gyg1 glycogenin 1 involved_in ISO (PMID:22160680) RGD PMID:22160680 NCBI chr 2:104,540,927...104,583,038
Ensembl chr 2:104,540,533...104,582,818 		JBrowse link
negative regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:11289049) RGD PMID:11289049 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:22,518,069...22,583,044 		JBrowse link
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 IMP RGD PMID:8349040 RGD:1625425 NCBI chr 4:121,054,023...121,103,799
Ensembl chr 4:121,054,045...121,103,799 		JBrowse link
G Grb10 growth factor receptor bound protein 10 involved_in IDA PMID:11223174 BHF-UCL PMID:11223174 RGD:8553640 NCBI chr14:90,708,653...90,816,399
Ensembl chr14:90,708,653...90,816,387 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISO (PMID:31553910) RGD PMID:31553910 NCBI chr11:76,004,502...76,154,665
Ensembl chr11:76,009,507...76,153,249 		JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K involved_in ISO
IEA
IBA 		(PMID:12556481)
(PMID:19250614)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000033 		RGD
UniProt
Ensembl
GO_Central		 PMID:12556481 PMID:19250614 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr10:60,974,183...60,995,047
Ensembl chr10:60,973,950...60,995,046 		JBrowse link
G Insr insulin receptor IEP RGD PMID:26300412 RGD:11529553 NCBI chr12:5,991,135...6,129,275
Ensembl chr12:5,981,835...6,128,803 		JBrowse link
G LOC120093063 sperm motility kinase-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:70,961,579...71,088,542
Ensembl chr16:71,069,299...71,176,054 		JBrowse link
G Mir1 microRNA 1 involved_in ISO RNAcentral:URS000069B691_10090 (PMID:24481529) RGD PMID:24481529 NCBI chr18:2,160,327...2,160,413 JBrowse link
G Mir15b microRNA 15b acts_upstream_of ISO (PMID:26179126) RGD PMID:26179126 NCBI chr 2:155,555,178...155,555,275
Ensembl chr 2:155,555,178...155,555,275 		JBrowse link
G Mir195 microRNA 195 acts_upstream_of ISO (PMID:25240198) RGD PMID:25240198 NCBI chr10:55,450,495...55,450,581
Ensembl chr10:55,450,495...55,450,581 		JBrowse link
G Mir1a-1 microRNA 1a-1 involved_in ISO RNAcentral:URS000075D8E6_10090 (PMID:24481529) RGD PMID:24481529 NCBI chr 3:187,864,685...187,864,769
Ensembl chr 3:187,864,685...187,864,769 		JBrowse link
G Pask PAS domain containing serine/threonine kinase involved_in ISO
IBA 		(PMID:16275910)
GO_REF:0000033 		RGD
GO_Central		 PMID:16275910 GO_REF:0000033 NCBI chr 9:101,291,673...101,333,288
Ensembl chr 9:101,291,676...101,332,504 		JBrowse link
G Prkag3 protein kinase AMP-activated non-catalytic subunit gamma 3 acts_upstream_of_or_within ISO MGI:3055131 (PMID:15857891) RGD PMID:15857891 NCBI chr 9:83,744,385...83,753,629
Ensembl chr 9:83,744,385...83,753,729 		JBrowse link
positive regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in ISO
IEA 		(PMID:16814735)
GO_REF:0000107 		RGD
Ensembl		 PMID:16814735 GO_REF:0000107 NCBI chr 6:137,534,810...137,555,131
Ensembl chr 6:137,535,390...137,552,610 		JBrowse link
G Akt2 AKT serine/threonine kinase 2 involved_in ISO
IEA 		(PMID:16814735)
GO_REF:0000107 		RGD
Ensembl		 PMID:16814735 GO_REF:0000107 NCBI chr 1:92,004,705...92,061,420
Ensembl chr 1:92,014,859...92,061,420 		JBrowse link
G C1qtnf2 C1q and TNF related 2 acts_upstream_of_or_within ISO (PMID:15231994) RGD PMID:15231994 NCBI chr10:28,443,326...28,460,400
Ensembl chr10:28,443,425...28,460,395 		JBrowse link
G Cd36 CD36 molecule IDA RGD PMID:14640889 RGD:1600636 NCBI chr 4:18,209,088...18,302,142 JBrowse link
G Dyrk2 dual specificity tyrosine phosphorylation regulated kinase 2 involved_in ISO (PMID:11311121) RGD PMID:11311121 NCBI chr 7:56,235,276...56,265,741
Ensembl chr 7:56,235,276...56,265,942 		JBrowse link
G Epm2aip1 EPM2A interacting protein 1 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:3857785 (PMID:24142699) 		GO_Central
RGD		 PMID:24142699 GO_REF:0000033 NCBI chr 8:120,112,265...120,119,613
Ensembl chr 8:120,112,084...120,121,458 		JBrowse link
G Esrrb estrogen-related receptor beta involved_in IDA
ISO 		PMID:24481529
(PMID:24481529) 		RGD PMID:24481529 PMID:24481529 RGD:12910990 NCBI chr 6:111,738,662...111,894,087
Ensembl chr 6:111,738,662...111,894,087 		JBrowse link
G Gck glucokinase involved_in ISO
ISS
IEA 		(PMID:8878425)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:8878425 GO_REF:0000024 GO_REF:0000107 NCBI chr14:84,999,019...85,041,098
Ensembl chr14:84,999,020...85,040,949 		JBrowse link
G Igf1 insulin-like growth factor 1 involved_in ISO
ISS
IEA 		(PMID:21076856)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:21076856 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:24,169,608...24,249,446
Ensembl chr 7:24,130,137...24,246,764 		JBrowse link
G Igf2 insulin-like growth factor 2 acts_upstream_of ISO (PMID:20032056) RGD PMID:20032056 NCBI chr 1:207,243,873...207,261,263
Ensembl chr 1:207,243,873...207,260,667 		JBrowse link
G Ins2 insulin 2 involved_in ISO (PMID:17925406) RGD PMID:17925406 NCBI chr 1:207,272,738...207,421,998
Ensembl chr 1:207,272,742...207,273,805 		JBrowse link
G Insr insulin receptor involved_in
acts_upstream_of 		ISO (PMID:17925406)
(PMID:20032056) 		RGD PMID:17925406 PMID:20032056 NCBI chr12:5,991,135...6,129,275
Ensembl chr12:5,981,835...6,128,803 		JBrowse link
G Irs1 insulin receptor substrate 1 involved_in ISO (PMID:16814735) RGD PMID:16814735 NCBI chr 9:91,001,137...91,053,959
Ensembl chr 9:90,993,519...91,054,538 		JBrowse link
G Irs2 insulin receptor substrate 2 involved_in ISO
IEA 		(PMID:16814735)
GO_REF:0000107 		RGD
Ensembl		 PMID:16814735 GO_REF:0000107 NCBI chr16:85,190,310...85,214,543
Ensembl chr16:85,190,111...85,214,543 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha involved_in IEA
ISO 		GO_REF:0000107
(PMID:31553910) 		Ensembl
RGD		 PMID:31553910 GO_REF:0000107 NCBI chr 1:210,914,576...210,918,193
Ensembl chr 1:210,914,567...210,918,193 		JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B involved_in IEA
ISO 		GO_REF:0000107
(PMID:31553910) 		Ensembl
RGD		 PMID:31553910 GO_REF:0000107 NCBI chr16:63,533,318...63,545,683
Ensembl chr16:63,532,842...63,549,997 		JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E involved_in IMP PMID:15752363 UniProt PMID:15752363 RGD:2306166 NCBI chr15:32,318,435...32,319,595 JBrowse link
G Ppp1r3g protein phosphatase 1, regulatory subunit 3G involved_in
acts_upstream_of_or_within 		ISO (PMID:31553910)
(PMID:21471512) 		RGD PMID:21471512 PMID:31553910 NCBI chr17:29,080,407...29,083,739
Ensembl chr17:29,070,658...29,085,135 		JBrowse link
G Pth parathyroid hormone involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:21076856)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:21076856 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:176,942,901...176,946,034
Ensembl chr 1:176,943,102...176,946,034 		JBrowse link
G Sorbs1 sorbin and SH3 domain containing 1 involved_in ISO (PMID:11001060) RGD PMID:11001060 NCBI chr 1:249,057,324...249,279,703
Ensembl chr 1:249,057,324...249,279,608 		JBrowse link
regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in ISO
IEA 		(PMID:8940145)
GO_REF:0000107 		RGD
Ensembl		 PMID:8940145 GO_REF:0000107 NCBI chr 6:137,534,810...137,555,131
Ensembl chr 6:137,535,390...137,552,610 		JBrowse link
G Fam217b family with sequence similarity 217, member B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:185,883,277...185,892,976
Ensembl chr 3:185,883,367...185,892,974 		JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K involved_in IEA
ISO 		GO_REF:0000107
(PMID:19250614) 		Ensembl
RGD		 PMID:19250614 GO_REF:0000107 NCBI chr10:60,974,183...60,995,047
Ensembl chr10:60,973,950...60,995,046 		JBrowse link
G Insr insulin receptor involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr12:5,991,135...6,129,275
Ensembl chr12:5,981,835...6,128,803 		JBrowse link
G Khk ketohexokinase acts_upstream_of_or_within ISO MGI:4398729 (PMID:22371574) RGD PMID:22371574 NCBI chr 6:31,165,246...31,175,779
Ensembl chr 6:31,165,248...31,175,481 		JBrowse link
G Mtor mechanistic target of rapamycin kinase IDA
IMP 		RGD PMID:17142137 PMID:17142137 RGD:1625611, RGD:1625611 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:164,167,928...164,277,435 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha IDA RGD PMID:7720853 RGD:2304267 NCBI chr 1:210,914,576...210,918,193
Ensembl chr 1:210,914,567...210,918,193 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta IDA RGD PMID:7720853 RGD:2304267 NCBI chr 6:29,681,099...29,712,835
Ensembl chr 6:29,681,100...29,712,924 		JBrowse link
G Ppp1r3a protein phosphatase 1, regulatory subunit 3A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:43,905,648...43,946,236
Ensembl chr 4:43,905,648...43,946,236 		JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B involved_in IDA
IBA
IEA 		GO_REF:0000033
GO_REF:0000117 		GO_Central
UniProt
RGD		 PMID:7720853 PMID:11716774 GO_REF:0000033 GO_REF:0000117, RGD:2304267, RGD:2306167 NCBI chr16:63,533,318...63,545,683
Ensembl chr16:63,532,842...63,549,997 		JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C involved_in IDA
IBA
IEA 		GO_REF:0000033
GO_REF:0000117 		GO_Central
UniProt
RGD		 PMID:11716774 GO_REF:0000033 GO_REF:0000117, RGD:2306167 NCBI chr 1:243,873,524...243,878,527
Ensembl chr 1:243,871,704...243,878,835 		JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:11716774 GO_REF:0000033, RGD:2306167 NCBI chr 3:185,880,087...185,883,158
Ensembl chr 3:185,876,709...185,883,703 		JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:15752363 GO_REF:0000033, RGD:2306166 NCBI chr15:32,318,435...32,319,595 JBrowse link
G Ppp1r3f protein phosphatase 1, regulatory subunit 3F acts_upstream_of_or_within
involved_in 		ISO
IBA 		(PMID:21668450)
GO_REF:0000033 		RGD
GO_Central		 PMID:21668450 GO_REF:0000033 NCBI chr  X:17,581,467...17,617,087
Ensembl chr  X:17,601,239...17,617,102 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19688
    cellular process 18845
      metabolic process 11694
        generation of precursor metabolites and energy 560
          energy derivation by oxidation of organic compounds 506
            energy reserve metabolic process 113
              glycogen metabolic process 100
                glycogen biosynthetic process 53
                  glycogen biosynthetic process via ADP-glucose 0
                  glycogen biosynthetic process via UDP-glucose 1
                  negative regulation of glycogen biosynthetic process 13
                  positive regulation of glycogen biosynthetic process 20
                  regulation of glycogen biosynthetic process + 40
Path 2
Term Annotations click to browse term
  biological_process 19688
    cellular process 18845
      metabolic process 11694
        primary metabolic process 10271
          carbohydrate metabolic process 617
            polysaccharide metabolic process 120
              glucan metabolic process 102
                glucan biosynthetic process 53
                  glycogen biosynthetic process 53
                    glycogen biosynthetic process via ADP-glucose 0
                    glycogen biosynthetic process via UDP-glucose 1
                    negative regulation of glycogen biosynthetic process 13
                    positive regulation of glycogen biosynthetic process 20
                    regulation of glycogen biosynthetic process + 40
paths to the root