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ONTOLOGY REPORT - ANNOTATIONS

Term:glycogen biosynthetic process
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Accession:GO:0005978 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Synonyms:exact_synonym: glycogen anabolism;   glycogen biosynthesis;   glycogen formation;   glycogen synthesis
 xref: MetaCyc:GLYCOGENSYNTH-PWY


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glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain involved_in ISO (MGI:4412440|PMID:18459129) RGD PMID:18459129 MGI:4412440 NCBI chr 2:242,858,865...242,883,036
Ensembl chr 2:242,858,865...242,883,147 		JBrowse link
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:204,705,053...204,760,966
Ensembl chr 2:204,705,053...204,760,828 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 involved_in IMP PMID:10400692 UniProt PMID:10400692 RGD:8553850 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921 		JBrowse link
G Akt2 AKT serine/threonine kinase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:82,877,228...82,933,828
Ensembl chr 1:82,883,547...82,933,817 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within
involved_in		 ISO MGI:2145264 (MGI:6161945|PMID:28536304)
MGI:6118039 (MGI:3706308|PMID:17118331), (MGI:3767346|PMID:18040046), (MGI:6297136|PMID:31042462)		 RGD PMID:17118331 PMID:18040046 PMID:28536304 PMID:31042462 MGI:3706308 MGI:3767346 MGI:6161945 MGI:6297136 NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:5,727,066...5,920,555 		JBrowse link
G Epm2aip1 EPM2A interacting protein 1 acts_upstream_of ISO MGI:3857785 (MGI:5543825|PMID:24142699) RGD PMID:24142699 MGI:5543825 NCBI chr 8:111,233,871...111,241,219
Ensembl chr 8:111,233,826...111,241,871 		JBrowse link
G Gbe1 1,4-alpha-glucan branching enzyme 1 involved_in IDA
IBA
ISO		 PMID:21873635
MGI:4868492|MGI:5293612|MGI:5767122 (MGI:4867589|PMID:21075835), (MGI:5293158|PMID:21856731), (MGI:6297136|PMID:31042462)
(PMID:26199317)		 RGD PMID:21075835 PMID:21856731 PMID:26199317 PMID:31042462 PMID:6449198 More... MGI:4867589 MGI:5293158 MGI:6297136, RGD:1642743, RGD:13792537 NCBI chr11:8,734,806...9,000,226
Ensembl chr11:8,734,820...9,000,210 		JBrowse link
G Gck glucokinase IDA RGD PMID:17028192 RGD:1581879 NCBI chr14:80,785,060...80,829,842
Ensembl chr14:80,785,060...80,826,995 		JBrowse link
G Gyg1 glycogenin 1 involved_in IDA
ISO
IEA		 MGI:4364071 (MGI:6491806|PMID:33219378)
(PMID:22160680)
GO_REF:0000041
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:22160680 PMID:33219378 PMID:8224611 PMID:10710493 GO_REF:0000041 GO_REF:0000107 MGI:6491806, RGD:2303736, RGD:2304070 NCBI chr 2:102,611,888...102,653,916
Ensembl chr 2:102,598,496...102,653,797 		JBrowse link
G Gys1 glycogen synthase 1 involved_in
acts_upstream_of_or_within		 IDA
IBA
ISO
IEA		 PMID:21873635
MGI:4432767 (MGI:3706308|PMID:17118331), (MGI:6491806|PMID:33219378), (MGI:7261132|PMID:20300197), (MGI:7261135|PMID:21356517)
GO_REF:0000041
MGI:3052742 (MGI:3052259|PMID:15282316)
(PMID:16275910)		 RGD
UniProt		 PMID:15282316 PMID:16275910 PMID:17118331 PMID:20300197 PMID:21356517 More... GO_REF:0000041 MGI:3052259 MGI:3706308 MGI:6491806 MGI:7261132 MGI:7261135, RGD:1642743, RGD:13792537, RGD:2303748 NCBI chr 1:95,915,443...95,935,292
Ensembl chr 1:95,915,443...95,935,292 		JBrowse link
G Gys2 glycogen synthase 2 involved_in IDA
IBA
ISO
IEA		 PMID:21873635
MGI:4462836 (MGI:5918476|PMID:28483921)
(PMID:1731614)
GO_REF:0000041
PMID:11415431		 RGD
UniProt		 PMID:1731614 PMID:28483921 PMID:114169 PMID:21873635 PMID:1731614 More... GO_REF:0000041 MGI:5918476, RGD:2304128, RGD:13792537, RGD:8554840, RGD:8554625, RGD:1642743, RGD:1582633 NCBI chr 4:175,365,054...175,406,228
Ensembl chr 4:175,365,054...175,406,228 		JBrowse link
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 acts_upstream_of_or_within
involved_in		 ISO MGI:1341085 (MGI:6161945|PMID:28536304)
MGI:3808349|MGI:5312923 (MGI:4839423|PMID:20538597), (MGI:6297136|PMID:31042462)		 RGD PMID:20538597 PMID:28536304 PMID:31042462 MGI:4839423 MGI:6161945 MGI:6297136 NCBI chr17:17,674,375...17,675,565
Ensembl chr17:17,674,319...17,677,148 		JBrowse link
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
UniProtKB:O54943 (MGI:4429726|PMID:20159955)		 UniProt
Ensembl
RGD		 PMID:20159955 GO_REF:0000024 GO_REF:0000107 MGI:4429726 NCBI chr10:83,728,348...83,735,562
Ensembl chr10:83,728,318...83,735,705 		JBrowse link
G Per2 period circadian regulator 2 involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:Q3UV55 (MGI:4429726|PMID:20159955)		 UniProt
RGD		 PMID:20159955 GO_REF:0000024 MGI:4429726 NCBI chr 9:92,007,289...92,049,551
Ensembl chr 9:92,007,296...92,049,459 		JBrowse link
G Phkg1 phosphorylase kinase catalytic subunit gamma 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:26,838,822...26,854,547
Ensembl chr12:26,838,968...26,852,850 		JBrowse link
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:182,184,362...182,197,124
Ensembl chr 1:182,184,650...182,197,124 		JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 GO_REF:0000104
(MGI:86241|PMID:9045612)
GO_REF:0000024
(MGI:1353778|PMID:10683377)		 UniProt
RGD		 PMID:9045612 PMID:10683377 GO_REF:0000024 GO_REF:0000104 MGI:1353778 MGI:86241 NCBI chr 1:234,460,958...234,465,961
Ensembl chr 1:234,460,652...234,465,961 		JBrowse link
G Ppp1r3g protein phosphatase 1, regulatory subunit 3G acts_upstream_of ISO (MGI:5000151|PMID:21471512) RGD PMID:21471512 MGI:5000151 NCBI chr17:28,874,956...28,878,288
Ensembl chr17:28,876,482...28,877,525 		JBrowse link
G Prkag3 protein kinase AMP-activated non-catalytic subunit gamma 3 acts_upstream_of_or_within ISO MGI:3055131 (MGI:3583413|PMID:15857891) RGD PMID:15857891 MGI:3583413 NCBI chr 9:76,295,715...76,304,959
Ensembl chr 9:76,295,715...76,304,959 		JBrowse link
G Ptges3 prostaglandin E synthase 3 acts_upstream_of_or_within ISO MGI:3701300 (MGI:3714109|PMID:17438133) RGD PMID:17438133 MGI:3714109 NCBI chr 7:490,698...507,759
Ensembl chr 7:490,656...508,084 		JBrowse link
G Ugp2 UDP-glucose pyrophosphorylase 2 involved_in IEA
ISO		 GO_REF:0000041
(MGI:6405924|PMID:32286295)
(PMID:31820119)		 UniProt
RGD		 PMID:31820119 PMID:32286295 GO_REF:0000041 MGI:6405924 NCBI chr14:95,456,330...95,497,483
Ensembl chr14:95,456,330...95,496,830 		JBrowse link
negative regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:11289049) RGD PMID:11289049 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 IMP RGD PMID:8349040 RGD:1625425 NCBI chr 4:119,496,691...119,546,472
Ensembl chr 4:119,496,714...119,546,471 		JBrowse link
G Grb10 growth factor receptor bound protein 10 involved_in IDA PMID:11223174 BHF-UCL PMID:11223174 RGD:8553640 NCBI chr14:86,495,054...86,602,815
Ensembl chr14:86,495,054...86,602,806 		JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K involved_in ISO
IBA		 (MGI:5294535|PMID:19250614)
(PMID:12556481)
PMID:21873635		 RGD PMID:12556481 PMID:19250614 PMID:21873635 MGI:5294535, RGD:13792537 NCBI chr10:60,474,262...60,495,813
Ensembl chr10:60,475,897...60,496,773 		JBrowse link
G Insr insulin receptor IEP RGD PMID:26300412 RGD:11529553 NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883 		JBrowse link
G Mir15b microRNA 15b acts_upstream_of ISO (PMID:26179126) RGD PMID:26179126 NCBI chr 2:153,245,200...153,245,297
Ensembl chr 2:153,245,200...153,245,297 		JBrowse link
G Mir195 microRNA 195 acts_upstream_of ISO (PMID:25240198) RGD PMID:25240198 NCBI chr10:54,951,838...54,951,924
Ensembl chr10:54,951,838...54,951,924 		JBrowse link
G Pask PAS domain containing serine/threonine kinase involved_in IBA
ISO		 PMID:21873635
(PMID:16275910)		 RGD PMID:16275910 PMID:21873635 RGD:13792537 NCBI chr 9:93,844,275...93,886,036
Ensembl chr 9:93,844,278...93,885,111 		JBrowse link
positive regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in ISO (PMID:16814735) RGD PMID:16814735 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921 		JBrowse link
G Akt2 AKT serine/threonine kinase 2 involved_in ISO (PMID:16814735) RGD PMID:16814735 NCBI chr 1:82,877,228...82,933,828
Ensembl chr 1:82,883,547...82,933,817 		JBrowse link
G C1qtnf2 C1q and TNF related 2 acts_upstream_of_or_within ISO (MGI:3055459|PMID:15231994) RGD PMID:15231994 MGI:3055459 NCBI chr10:27,941,948...27,958,926
Ensembl chr10:27,941,948...27,959,185 		JBrowse link
G Cd36 CD36 molecule IDA RGD PMID:14640889 RGD:1600636 NCBI chr 4:17,317,343...17,410,084
Ensembl chr 4:17,354,466...17,513,903 		JBrowse link
G Dyrk2 dual specificity tyrosine phosphorylation regulated kinase 2 involved_in ISO (PMID:11311121) RGD PMID:11311121 NCBI chr 7:54,348,724...54,381,363
Ensembl chr 7:54,349,610...54,380,106 		JBrowse link
G Epm2aip1 EPM2A interacting protein 1 acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:3857785 (MGI:5543825|PMID:24142699)
PMID:21873635		 RGD PMID:24142699 PMID:21873635 MGI:5543825, RGD:13792537 NCBI chr 8:111,233,871...111,241,219
Ensembl chr 8:111,233,826...111,241,871 		JBrowse link
G Esrrb estrogen-related receptor beta involved_in ISO
IDA		 (MGI:5905261|PMID:24481529) RGD PMID:24481529 PMID:24481529 MGI:5905261, RGD:12910990 NCBI chr 6:106,007,662...106,163,136
Ensembl chr 6:106,008,095...106,160,791 		JBrowse link
G Gck glucokinase involved_in ISS
ISO		 GO_REF:0000024
(PMID:8878425)		 UniProt
RGD		 PMID:8878425 GO_REF:0000024 NCBI chr14:80,785,060...80,829,842
Ensembl chr14:80,785,060...80,826,995 		JBrowse link
G Igf1 insulin-like growth factor 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21076856)		 UniProt
Ensembl
RGD		 PMID:21076856 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296 		JBrowse link
G Igf2 insulin-like growth factor 2 involved_in ISO (MGI:4438697|PMID:20032056) RGD PMID:20032056 MGI:4438697 NCBI chr 1:197,814,409...197,831,802
Ensembl chr 1:197,814,410...197,823,018 		JBrowse link
G Ins2 insulin 2 involved_in ISO (PMID:17925406) RGD PMID:17925406 NCBI chr 1:197,843,277...197,992,522
Ensembl chr 1:197,843,281...197,864,775 		JBrowse link
G Insr insulin receptor involved_in ISO
IEA		 (PMID:17925406)
(MGI:4438697|PMID:20032056)
GO_REF:0000107		 RGD
Ensembl		 PMID:17925406 PMID:20032056 GO_REF:0000107 MGI:4438697 NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883 		JBrowse link
G Irs1 insulin receptor substrate 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:16814735)		 Ensembl
RGD		 PMID:16814735 GO_REF:0000107 NCBI chr 9:83,552,964...83,605,797
Ensembl chr 9:83,548,944...83,606,122 		JBrowse link
G Irs2 insulin receptor substrate 2 involved_in ISO (PMID:16814735) RGD PMID:16814735 NCBI chr16:78,488,249...78,512,482
Ensembl chr16:78,485,045...78,512,482 		JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E involved_in IMP PMID:15752363 UniProt PMID:15752363 RGD:2306166 NCBI chr15:28,348,443...28,349,603
Ensembl chr15:28,347,854...28,349,603 		JBrowse link
G Ppp1r3g protein phosphatase 1, regulatory subunit 3G acts_upstream_of_or_within ISO (MGI:5000151|PMID:21471512) RGD PMID:21471512 MGI:5000151 NCBI chr17:28,874,956...28,878,288
Ensembl chr17:28,876,482...28,877,525 		JBrowse link
G Pth parathyroid hormone involved_in ISS
ISO		 GO_REF:0000024
(PMID:21076856)		 UniProt
RGD		 PMID:21076856 GO_REF:0000024 NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530 		JBrowse link
G Sorbs1 sorbin and SH3 domain containing 1 involved_in ISO (MGI:3690172|PMID:11001060) RGD PMID:11001060 MGI:3690172 NCBI chr 1:239,107,882...239,330,276
Ensembl chr 1:239,108,777...239,330,169 		JBrowse link
regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in ISO (PMID:8940145) RGD PMID:8940145 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921 		JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K involved_in ISO (MGI:5294535|PMID:19250614) RGD PMID:19250614 MGI:5294535 NCBI chr10:60,474,262...60,495,813
Ensembl chr10:60,475,897...60,496,773 		JBrowse link
G Mtor mechanistic target of rapamycin kinase IDA
IMP		 RGD PMID:17142137 PMID:17142137 RGD:1625611, RGD:1625611 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha IDA RGD PMID:7720853 RGD:2304267 NCBI chr 1:201,485,117...201,488,734
Ensembl chr 1:201,485,085...201,497,327 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta IDA RGD PMID:7720853 RGD:2304267 NCBI chr 6:23,958,813...23,992,841
Ensembl chr 6:23,960,998...23,992,824 		JBrowse link
G Ppp1r3a protein phosphatase 1, regulatory subunit 3A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:42,937,353...42,980,195
Ensembl chr 4:42,939,599...42,980,638 		JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:7720853 PMID:21873635 PMID:11716774 RGD:2304267, RGD:13792537, RGD:2306167 NCBI chr16:56,830,011...56,842,395
Ensembl chr16:56,829,660...56,842,406 		JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:11716774 PMID:21873635 RGD:2306167, RGD:13792537 NCBI chr 1:234,460,958...234,465,961
Ensembl chr 1:234,460,652...234,465,961 		JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:11716774 PMID:21873635 RGD:2306167, RGD:13792537 NCBI chr 3:165,502,384...165,505,455
Ensembl chr 3:165,502,384...165,505,455 		JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:15752363 PMID:21873635 RGD:2306166, RGD:13792537 NCBI chr15:28,348,443...28,349,603
Ensembl chr15:28,347,854...28,349,603 		JBrowse link
G Ppp1r3f protein phosphatase 1, regulatory subunit 3F acts_upstream_of_or_within ISO (PMID:21668450) RGD PMID:21668450 NCBI chr  X:14,915,740...14,945,249
Ensembl chr  X:14,929,323...14,945,193 		JBrowse link
G Ppp1r3g protein phosphatase 1, regulatory subunit 3G involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:28,874,956...28,878,288
Ensembl chr17:28,876,482...28,877,525 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19746
    metabolic process 12044
      cellular metabolic process 9531
        generation of precursor metabolites and energy 441
          energy derivation by oxidation of organic compounds 365
            energy reserve metabolic process 94
              glycogen metabolic process 84
                glycogen biosynthetic process 48
                  negative regulation of glycogen biosynthetic process 8
                  positive regulation of glycogen biosynthetic process 18
                  regulation of glycogen biosynthetic process + 33
paths to the root