RETINOIC ACID METABOLIC PATHWAY (PW:0001004)
Description
Animal species cannot synthesize retinol or vitamin A. They derive it from precursor carotenoids such as beta-carotene via retinal and they can store it as retinyl esters (REs) which they can hydrolyze (liver is the largest REs storage). Thus, both plant and animal dietary sources can provide vitamin A. Vitamin A metabolites such as retinal and retinoic acid play essential roles in vision and a range of cellular processes. More recently, a role for retinol in mitochondrial signaling where it may serve as a co-factor in redox sensing and energy homeostasis, has been postulated. The lipid retinol is subject to oxidation and as such is associated with carrier proteins such as Rbp4 in the circulation and Rbp1 inside cells. Rbp4 associates with transthyretin (Ttr) that also transports thyroxine (T4) and can act as a protease with important functions in the nervous system. The Ttr-Rbp4 association is stabilized by retinol but not by other retinoids. The ternary complex consists of a dimer of dimers Ttr tetramer with two Rbp4 molecules bound on either side of the dimers; in the complex, retinol also establishes contacts with Ttr (
PDB entry for the ternary complex ). Stra6 acts as a receptor for Rbp4 and as a transporter for retinol. Interestingly, Stra6 may also act as a signal transducer by inducing the Jak-Stat pathway. Inside the cell, retinol may be esterified to REs by the lecithin retinol acyltransferase Lrat in most tissues. REs are converted back to retinol by the action of retinyl ester hydrolase CES1. The human CES1 has a mouse but not a rat ortholog; several rat and mouse genes are potential REs hydrolases as well as a number of lipases (human CES1 gene shown). The ratio of apo- to holo-Rbp1 maintains a balanced flux of retinol to and from its REs storage. Apo-Rbp1 stimulates hydrolysis of REs while inhibiting retinol esterification. Alternatively, retinol may be reversibly converted to retinal by members of the short chain dehydrogenase/reductase family (SDR). In the retinal pigment epithelium, retinol is metabolized to cis-retinal to serve as the chromophore of the visual pigment. In other cells, retinal is the substrate for retinal dehydrogenases that irreversible convert it to all-trans retinoic acid (atRA) and other derivatives with atRA being the most potent molecule. atRA interacts with several proteins of the FABP family that exert distinct roles. Crabp2 and Fabp5 deliver atRA to particular nuclear receptors such as retinoid acid receptors (RARs) and a subset of peroxisome proliferator-activated receptors (PPAR), respectively. RARs form heterodimers with retinoid X receptors (RXR)s which partner with a number of other nuclear receptors, do not interact with atRA but favor 9-cisRA. Crabp1 on the other hand, relates to the processing and catabolism of retinoic acid. While the exact role of Crabp1 is still to be documented, its overexpression increases the rate of atRA catabolism. Several members of the cytochrome P450 are involved in the process. atRA signaling is important for development, cell proliferation, differentiation and death, immune and nervous systems function. Alterations in these signaling pathways has been associated with several conditions including cancer.
To see the ontology report for annotations, Gviewer and download, click here [click to see associated GO term GO:0042573 ]...(less)
Pathway Diagram:
Genes in Pathway:
G
Aldh1a1
aldehyde dehydrogenase 1 family, member A1
TAS IMP
RGD
PMID:21621639 PMID:21138835
RGD:6484672 , RGD:6771354
NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:227,427,070...227,579,500
G
Aldh1a2
aldehyde dehydrogenase 1 family, member A2
TAS IMP
RGD
PMID:21621639 PMID:21138835
RGD:6484672 , RGD:6771354
NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:80,758,142...80,837,883
G
Aldh1a3
aldehyde dehydrogenase 1 family, member A3
ISO IMP
RGD
PMID:21621639 PMID:21138835
RGD:6484672 , RGD:6771354
NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:129,392,516...129,427,777
G
Ces1d
carboxylesterase 1D
ISO
RGD
PMID:21621639
RGD:6484672
NCBI chr19:30,046,494...30,085,039
Ensembl chr19:30,046,449...30,085,449
G
Crabp1
cellular retinoic acid binding protein 1
ISO
RGD
PMID:21621639
RGD:6484672
NCBI chr 8:64,047,431...64,055,469
Ensembl chr 8:64,047,060...64,055,470
G
Crabp2
cellular retinoic acid binding protein 2
ISO
RGD
PMID:21621639
RGD:6484672
NCBI chr 2:175,714,862...175,719,208
Ensembl chr 2:175,707,312...175,728,385
G
Cyp26a1
cytochrome P450, family 26, subfamily a, polypeptide 1
ISO
RGD
PMID:21621639
RGD:6484672
NCBI chr 1:244,883,822...244,887,657
Ensembl chr 1:244,883,752...244,887,657
G
Cyp26b1
cytochrome P450, family 26, subfamily b, polypeptide 1
ISO IMP
RGD
PMID:21621639 PMID:21138835
RGD:6484672 , RGD:6771354
NCBI chr 4:118,599,356...118,616,176
Ensembl chr 4:118,599,356...118,616,176
G
Cyp26c1
cytochrome P450, family 26, subfamily C, polypeptide 1
ISO
RGD
PMID:21621639
RGD:6484672
NCBI chr 1:244,870,412...244,881,610
Ensembl chr 1:244,871,612...244,880,297
G
Dhrs9
dehydrogenase/reductase 9
ISO IMP
RGD
PMID:21621639 PMID:21138835
RGD:6484672 , RGD:6771354
NCBI chr 3:74,553,357...74,579,535
Ensembl chr 3:74,555,606...74,581,376
G
Fabp5
fatty acid binding protein 5
ISO
RGD
PMID:21621639
RGD:6484672
NCBI chr 2:93,672,451...93,676,186
Ensembl chr 2:93,672,458...93,676,127
G
Lrat
lecithin retinol acyltransferase
ISO
RGD
PMID:21621639
RGD:6484672
NCBI chr 2:170,562,148...170,571,212
Ensembl chr 2:170,565,543...170,571,148
G
Rbp1
retinol binding protein 1
ISO
RGD
PMID:21621639
RGD:6484672
NCBI chr 8:107,904,589...107,926,109
Ensembl chr 8:107,887,417...107,983,847
G
Rbp4
retinol binding protein 4
ISO
RGD
PMID:21782034 PMID:21621639
RGD:6484671 , RGD:6484672
NCBI chr 1:245,306,349...245,313,551
Ensembl chr 1:245,306,349...245,313,898
G
Rdh10
retinol dehydrogenase 10
ISO IMP
RGD
PMID:21621639 PMID:21138835
RGD:6484672 , RGD:6771354
NCBI chr 5:7,969,931...7,998,834
Ensembl chr 5:7,971,705...7,999,019
G
Rdh16
retinol dehydrogenase 16
IMP
RGD
PMID:21138835
RGD:6771354
NCBI chr 7:65,499,763...65,510,304
G
Rdh7
retinol dehydrogenase 7
TAS
RGD
PMID:21621639
RGD:6484672
NCBI chr 7:65,561,259...65,574,618
Ensembl chr 7:65,560,822...65,574,635
G
Stra6
signaling receptor and transporter of retinol STRA6
ISO
RGD
PMID:21782034 PMID:21621639
RGD:6484671 , RGD:6484672
NCBI chr 8:67,444,757...67,464,719
Ensembl chr 8:67,444,742...67,464,720
G
Ttr
transthyretin
ISO
RGD
PMID:21782034
RGD:6484671
NCBI chr18:12,216,684...12,225,972
Ensembl chr18:12,216,732...12,225,969
Pathway Gene Annotations
Disease Annotations Associated with Genes in the retinoic acid metabolic pathway
Aldh1a1 autism spectrum disorder , Creutzfeldt-Jakob disease , Experimental Liver Cirrhosis , liver disease , melanoma , metabolic dysfunction-associated steatotic liver disease , Neoplastic Cell Transformation , oral squamous cell carcinoma , pancreatic cancer , Parkinsonism , renal cell carcinoma Aldh1a2 Coronary Occlusion , Diaphragmatic Hernia 4 , DiGeorge syndrome , duodenal atresia , limb ischemia , myelomeningocele , osteoarthritis , Parkinsonism , Prostatic Neoplasms , Schistosomiasis Mansoni , tetralogy of Fallot Aldh1a3 autism spectrum disorder , genetic disease , isolated microphthalmia 8 , melanoma , Stomach Neoplasms , syndromic microphthalmia 9 Ces1d alcohol dependence , Brain Injuries , Cocaine-Related Disorders , colorectal cancer , COVID-19 , gastrointestinal system cancer , hepatocellular carcinoma , Hypercholesterolemia , inherited metabolic disorder , liver cancer , Lung Neoplasms , Monocyte Esterase Deficiency , obesity , opiate dependence , stomach cancer Crabp1 esophagus squamous cell carcinoma , Keloid , Liver Neoplasms , renal cell carcinoma Crabp2 methylmalonic acidemia , Ovarian Neoplasms , Recurrence Cyp26a1 actinic keratosis , adenocarcinoma , Barrett's adenocarcinoma , Barrett's esophagus , Colonic Neoplasms , endometriosis , Esophageal Neoplasms , Experimental Liver Cirrhosis , familial adenomatous polyposis , spina bifida , Vitamin A Deficiency Cyp26b1 autism spectrum disorder , Craniosynostosis Syndrome, Autosomal Recessive , Desbuquois dysplasia , esophagus squamous cell carcinoma , Experimental Diabetes Mellitus , genetic disease , hepatocellular carcinoma , mouth disease , obesity , Radiohumeral Fusions with Other Skeletal and Craniofacial Anomalies Cyp26c1 Focal Facial Dermal Dysplasia , Focal Facial Dermal Dysplasia 4 , syndromic microphthalmia 5 Dhrs9 Birth Weight Fabp5 hepatocellular carcinoma , Myocardial Ischemia , prostate cancer , psoriasis Lrat breast ductal carcinoma , celiac disease , Chemical and Drug Induced Liver Injury , cone-rod dystrophy , Experimental Liver Cirrhosis , Eye Abnormalities , fundus dystrophy , genetic disease , hepatocellular carcinoma , Hereditary Eye Diseases , invasive ductal carcinoma , Leber congenital amaurosis , Leber congenital amaurosis 1 , Leber congenital amaurosis 14 , Leber hereditary optic neuropathy , retinitis pigmentosa , retinitis pigmentosa 1 , Vitamin A Deficiency Rbp1 Animal Mammary Neoplasms , basal cell carcinoma , carcinoma , Chemical and Drug Induced Liver Injury , Experimental Mammary Neoplasms , Fetal Growth Retardation , multiple myeloma , Stomach Neoplasms Rbp4 Acute Coronary Syndrome , acute pyelonephritis , alcohol-associated liver disease , Animal Mammary Neoplasms , Anophthalmia , anterior segment dysgenesis , aortic disease , Arteriovenous Fistula , atherosclerosis , Breast Neoplasms , carcinoma , Cardiomegaly , Carotid Atherosclerosis , cerebral infarction , chronic kidney disease , coloboma , colon adenoma , congestive heart failure , coronary artery disease , Coronary Disease , diabetic angiopathy , Diabetic Nephropathies , diabetic retinopathy , dilated cardiomyopathy , Dyslipidemias , essential hypertension , Experimental Liver Cirrhosis , Experimental Mammary Neoplasms , Eye Abnormalities , familial hypercholesterolemia , fundus dystrophy , gallbladder cancer , genetic disease , gestational diabetes , hyperinsulinism , hypertension , Hypertriglyceridemia , Insulin Resistance , Jaundice , keratomalacia , kidney disease , liver cirrhosis , Metabolic Syndrome , microphthalmia , Microphthalmia/Coloboma 10 , myocardial infarction , Necrosis , obesity , Pediatric Obesity , polycystic ovary syndrome , pre-eclampsia , Pregnancy-Induced Hypertension , Prehypertension , proliferative diabetic retinopathy , psoriasis , Retinal Dystrophy, Iris Coloboma, and Comedogenic Acne Syndrome , retinitis pigmentosa 1 , severe pre-eclampsia , Spontaneous Abortions , Stable Angina , Stomach Neoplasms , systemic scleroderma , type 2 diabetes mellitus , Vision Disorders , Vitamin A Deficiency Rdh10 Craniofacial Abnormalities , Experimental Liver Cirrhosis , Fetal Death Stra6 Anophthalmia , Cardiovascular Abnormalities , colorectal adenocarcinoma , congenital heart disease , Craniofacial Abnormalities , diabetic retinopathy , Diaphragmatic Hernia , exfoliation syndrome , Experimental Diabetes Mellitus , genetic disease , intellectual disability , Isolated Microphthalmia with Coloboma , lung disease , microphthalmia , persistent fetal circulation syndrome , syndromic microphthalmia 5 , syndromic microphthalmia 9 Ttr acute kidney failure , adenosquamous lung carcinoma , Alzheimer's disease , Amyloid Neuropathies , amyloidosis , brain ischemia , Brugada syndrome , cardiac amyloidosis , Cardiac Conduction Defect , cardiomyopathy , carpal tunnel syndrome , carpal tunnel syndrome 1 , Charcot-Marie-Tooth disease , Chemical and Drug Induced Liver Injury , cholangiocarcinoma , colorectal adenoma , colorectal cancer , congestive heart failure , Drug Eruptions , Drug-Related Side Effects and Adverse Reactions , dystransthyretinemic hyperthyroxinemia , Familial Amyloid Polyneuropathies , Familial Amyloidosis , familial hypertrophic cardiomyopathy , Heart Block , hepatocellular carcinoma , hereditary systemic amyloidosis 1 , hypertrophic cardiomyopathy , hypertrophic cardiomyopathy 1 , Hypothermia , lung adenocarcinoma , lung cancer , lung large cell carcinoma , Lung Neoplasms , lung non-small cell carcinoma , lung small cell carcinoma , Lymphatic Metastasis , Neoplasm Metastasis , oral squamous cell carcinoma , stomach cancer , Sudden Unexpected Nocturnal Death Syndrome
actinic keratosis Cyp26a1 Acute Coronary Syndrome Rbp4 acute kidney failure Ttr acute pyelonephritis Rbp4 adenocarcinoma Cyp26a1 adenosquamous lung carcinoma Ttr alcohol dependence Ces1d alcohol-associated liver disease Rbp4 Alzheimer's disease Ttr Amyloid Neuropathies Ttr amyloidosis Ttr Animal Mammary Neoplasms Rbp1 , Rbp4 Anophthalmia Rbp4 , Stra6 anterior segment dysgenesis Rbp4 aortic disease Rbp4 Arteriovenous Fistula Rbp4 atherosclerosis Rbp4 autism spectrum disorder Aldh1a1 , Aldh1a3 , Cyp26b1 Barrett's adenocarcinoma Cyp26a1 Barrett's esophagus Cyp26a1 basal cell carcinoma Rbp1 Birth Weight Dhrs9 Brain Injuries Ces1d brain ischemia Ttr breast ductal carcinoma Lrat Breast Neoplasms Rbp4 Brugada syndrome Ttr carcinoma Rbp1 , Rbp4 cardiac amyloidosis Ttr Cardiac Conduction Defect Ttr Cardiomegaly Rbp4 cardiomyopathy Ttr Cardiovascular Abnormalities Stra6 Carotid Atherosclerosis Rbp4 carpal tunnel syndrome Ttr carpal tunnel syndrome 1 Ttr celiac disease Lrat cerebral infarction Rbp4 Charcot-Marie-Tooth disease Ttr Chemical and Drug Induced Liver Injury Lrat , Rbp1 , Ttr cholangiocarcinoma Ttr chronic kidney disease Rbp4 Cocaine-Related Disorders Ces1d coloboma Rbp4 colon adenoma Rbp4 Colonic Neoplasms Cyp26a1 colorectal adenocarcinoma Stra6 colorectal adenoma Ttr colorectal cancer Ces1d , Ttr cone-rod dystrophy Lrat congenital heart disease Stra6 congestive heart failure Rbp4 , Ttr coronary artery disease Rbp4 Coronary Disease Rbp4 Coronary Occlusion Aldh1a2 COVID-19 Ces1d Craniofacial Abnormalities Rdh10 , Stra6 Craniosynostosis Syndrome, Autosomal Recessive Cyp26b1 Creutzfeldt-Jakob disease Aldh1a1 Desbuquois dysplasia Cyp26b1 diabetic angiopathy Rbp4 Diabetic Nephropathies Rbp4 diabetic retinopathy Rbp4 , Stra6 Diaphragmatic Hernia Stra6 Diaphragmatic Hernia 4 Aldh1a2 DiGeorge syndrome Aldh1a2 dilated cardiomyopathy Rbp4 Drug Eruptions Ttr Drug-Related Side Effects and Adverse Reactions Ttr duodenal atresia Aldh1a2 Dyslipidemias Rbp4 dystransthyretinemic hyperthyroxinemia Ttr endometriosis Cyp26a1 Esophageal Neoplasms Cyp26a1 esophagus squamous cell carcinoma Crabp1 , Cyp26b1 essential hypertension Rbp4 exfoliation syndrome Stra6 Experimental Diabetes Mellitus Cyp26b1 , Stra6 Experimental Liver Cirrhosis Aldh1a1 , Cyp26a1 , Lrat , Rbp4 , Rdh10 Experimental Mammary Neoplasms Rbp1 , Rbp4 Eye Abnormalities Lrat , Rbp4 familial adenomatous polyposis Cyp26a1 Familial Amyloid Polyneuropathies Ttr Familial Amyloidosis Ttr familial hypercholesterolemia Rbp4 familial hypertrophic cardiomyopathy Ttr Fetal Death Rdh10 Fetal Growth Retardation Rbp1 Focal Facial Dermal Dysplasia Cyp26c1 Focal Facial Dermal Dysplasia 4 Cyp26c1 fundus dystrophy Lrat , Rbp4 gallbladder cancer Rbp4 gastrointestinal system cancer Ces1d genetic disease Aldh1a3 , Cyp26b1 , Lrat , Rbp4 , Stra6 gestational diabetes Rbp4 Heart Block Ttr hepatocellular carcinoma Ces1d , Cyp26b1 , Fabp5 , Lrat , Ttr Hereditary Eye Diseases Lrat hereditary systemic amyloidosis 1 Ttr Hypercholesterolemia Ces1d hyperinsulinism Rbp4 hypertension Rbp4 Hypertriglyceridemia Rbp4 hypertrophic cardiomyopathy Ttr hypertrophic cardiomyopathy 1 Ttr Hypothermia Ttr inherited metabolic disorder Ces1d Insulin Resistance Rbp4 intellectual disability Stra6 invasive ductal carcinoma Lrat isolated microphthalmia 8 Aldh1a3 Isolated Microphthalmia with Coloboma Stra6 Jaundice Rbp4 Keloid Crabp1 keratomalacia Rbp4 kidney disease Rbp4 Leber congenital amaurosis Lrat Leber congenital amaurosis 1 Lrat Leber congenital amaurosis 14 Lrat Leber hereditary optic neuropathy Lrat limb ischemia Aldh1a2 liver cancer Ces1d liver cirrhosis Rbp4 liver disease Aldh1a1 Liver Neoplasms Crabp1 lung adenocarcinoma Ttr lung cancer Ttr lung disease Stra6 lung large cell carcinoma Ttr Lung Neoplasms Ces1d , Ttr lung non-small cell carcinoma Ttr lung small cell carcinoma Ttr Lymphatic Metastasis Ttr melanoma Aldh1a1 , Aldh1a3 metabolic dysfunction-associated steatotic liver disease Aldh1a1 Metabolic Syndrome Rbp4 methylmalonic acidemia Crabp2 microphthalmia Rbp4 , Stra6 Microphthalmia/Coloboma 10 Rbp4 Monocyte Esterase Deficiency Ces1d mouth disease Cyp26b1 multiple myeloma Rbp1 myelomeningocele Aldh1a2 myocardial infarction Rbp4 Myocardial Ischemia Fabp5 Necrosis Rbp4 Neoplasm Metastasis Ttr Neoplastic Cell Transformation Aldh1a1 obesity Ces1d , Cyp26b1 , Rbp4 opiate dependence Ces1d oral squamous cell carcinoma Aldh1a1 , Ttr osteoarthritis Aldh1a2 Ovarian Neoplasms Crabp2 pancreatic cancer Aldh1a1 Parkinsonism Aldh1a1 , Aldh1a2 Pediatric Obesity Rbp4 persistent fetal circulation syndrome Stra6 polycystic ovary syndrome Rbp4 pre-eclampsia Rbp4 Pregnancy-Induced Hypertension Rbp4 Prehypertension Rbp4 proliferative diabetic retinopathy Rbp4 prostate cancer Fabp5 Prostatic Neoplasms Aldh1a2 psoriasis Fabp5 , Rbp4 Radiohumeral Fusions with Other Skeletal and Craniofacial Anomalies Cyp26b1 Recurrence Crabp2 renal cell carcinoma Aldh1a1 , Crabp1 Retinal Dystrophy, Iris Coloboma, and Comedogenic Acne Syndrome Rbp4 retinitis pigmentosa Lrat retinitis pigmentosa 1 Lrat , Rbp4 Schistosomiasis Mansoni Aldh1a2 severe pre-eclampsia Rbp4 spina bifida Cyp26a1 Spontaneous Abortions Rbp4 Stable Angina Rbp4 stomach cancer Ces1d , Ttr Stomach Neoplasms Aldh1a3 , Rbp1 , Rbp4 Sudden Unexpected Nocturnal Death Syndrome Ttr syndromic microphthalmia 5 Cyp26c1 , Stra6 syndromic microphthalmia 9 Aldh1a3 , Stra6 systemic scleroderma Rbp4 tetralogy of Fallot Aldh1a2 type 2 diabetes mellitus Rbp4 Vision Disorders Rbp4 Vitamin A Deficiency Cyp26a1 , Lrat , Rbp4