Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:cell-matrix adhesion
go back to main search page
Accession:GO:0007160 term browser browse the term
Definition:The binding of a cell to the extracellular matrix via adhesion molecules.


show annotations for term's descendants           Sort by:
cell-matrix adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAM9 ADAM metallopeptidase domain 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:38,298,194...38,406,706
Ensembl chr 8:35,473,278...35,581,192 		JBrowse link
G ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:76,442,053...76,818,726
Ensembl chr 5:81,827,560...82,199,840 		JBrowse link
G AGT angiotensinogen acts_upstream_of_or_within ISO (PMID:9734405) MGI PMID:9734405 NCBI chr 1:206,252,141...206,263,830
Ensembl chr 1:211,279,015...211,291,044 		JBrowse link
G ANGPTL3 angiopoietin like 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:61,855,870...61,863,476
Ensembl chr 1:63,670,516...63,679,194 		JBrowse link
G ANXA2 annexin A2 acts_upstream_of_or_within ISO (PMID:24357721) MGI PMID:24357721 NCBI chr15:39,322,303...39,371,565
Ensembl chr15:57,625,425...57,674,250 		JBrowse link
G BCAM basal cell adhesion molecule (Lutheran blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:41,756,492...41,769,132
Ensembl chr19:50,361,780...50,374,600 		JBrowse link
G BCAN brevican ISO RGD PMID:11208904 RGD:14392798 NCBI chr 1:131,985,310...132,003,068
Ensembl chr 1:135,808,783...135,826,344 		JBrowse link
G BCL2L11 BCL2 like 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17276340) Ensembl
MGI
UniProt		 PMID:17276340 GO_REF:0000104 GO_REF:0000107 NCBI chr2A:90,862,070...90,909,833
Ensembl chr2A:112,337,927...112,385,079 		JBrowse link
G BCL6 BCL6 transcription repressor involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15860730) Ensembl
MGI		 PMID:15860730 GO_REF:0000107 NCBI chr 3:184,748,135...184,772,375
Ensembl chr 3:193,308,296...193,332,124 		JBrowse link
G CCN2 cellular communication network factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9184077) Ensembl
MGI		 PMID:9184077 GO_REF:0000107 NCBI chr 6:129,729,572...129,733,113
Ensembl chr 6:133,836,319...133,842,077 		JBrowse link
G CD34 CD34 molecule involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:183,459,028...183,489,583
Ensembl chr 1:188,272,551...188,297,384 		JBrowse link
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:33,181,896...33,186,123
Ensembl chr12:33,906,314...33,910,595 		JBrowse link
G CD96 CD96 molecule acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17847009) MGI
TreeGrafter
Ensembl		 PMID:17847009 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:108,694,670...108,798,114
Ensembl chr 3:115,619,374...115,720,858 		JBrowse link
G CDK5 cyclin dependent kinase 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12496365) Ensembl
MGI		 PMID:12496365 GO_REF:0000107 NCBI chr 7:142,640,630...142,644,785
Ensembl chr 7:154,793,344...154,797,499 		JBrowse link
G CNTN2 contactin 2 ISO RGD PMID:2317872 RGD:727707 NCBI chr 1:180,645,259...180,680,081
Ensembl chr 1:184,931,497...184,966,482 		JBrowse link
G COL3A1 collagen type III alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:76,285,115...76,322,703
Ensembl chr2B:194,204,613...194,242,956 		JBrowse link
G COL5A3 collagen type V alpha 3 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15908193) Ensembl
MGI		 PMID:15908193 GO_REF:0000107 NCBI chr19:9,512,028...9,563,306
Ensembl chr19:10,174,519...10,218,974 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15131783) Ensembl
MGI		 PMID:15131783 GO_REF:0000107 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030 		JBrowse link
G EDA ectodysplasin A acts_upstream_of_or_within ISO (PMID:10534613) MGI PMID:10534613 NCBI chr  X:58,881,660...59,308,451 JBrowse link
G EMILIN1 elastin microfibril interfacer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:27,077,551...27,085,437
Ensembl chr2A:27,166,747...27,174,525 		JBrowse link
G EMP2 epithelial membrane protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:9,465,589...9,517,593
Ensembl chr16:10,694,425...10,744,744 		JBrowse link
G EPDR1 ependymin related 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:38,556,734...38,588,059 JBrowse link
G FERMT1 FERM domain containing kindlin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:6,063,480...6,120,206
Ensembl chr20:5,856,287...5,902,251 		JBrowse link
G FERMT2 FERM domain containing kindlin 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:33,453,983...33,547,721
Ensembl chr14:51,737,188...51,829,766 		JBrowse link
G FERMT3 FERM domain containing kindlin 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:59,562,861...59,581,054
Ensembl chr11:62,909,030...62,928,191 		JBrowse link
G FGA fibrinogen alpha chain involved_in ISO (PMID:10903502) BHF-UCL PMID:10903502 NCBI chr 4:146,949,680...146,957,291 JBrowse link
G FGB fibrinogen beta chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:146,929,561...146,937,665
Ensembl chr 4:158,747,659...158,755,766 		JBrowse link
G FGG fibrinogen gamma chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:146,970,671...146,979,348
Ensembl chr 4:158,788,966...158,797,237 		JBrowse link
G FN1 fibronectin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15728191) RGD
MGI
TreeGrafter
Ensembl		 PMID:12388756 PMID:15728191 GO_REF:0000107 GO_REF:0000118 RGD:1358623 NCBI chr2B:102,623,568...102,698,747
Ensembl chr2B:221,208,431...221,284,003 		JBrowse link
G FREM1 FRAS1 related extracellular matrix 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15345741) Ensembl
MGI		 PMID:15345741 GO_REF:0000107 NCBI chr 9:14,567,781...14,748,474
Ensembl chr 9:15,081,208...15,253,399 		JBrowse link
G GP5 glycoprotein V platelet acts_upstream_of_or_within ISO (PMID:11493449) MGI PMID:11493449 NCBI chr 3:191,691,432...191,696,906
Ensembl chr 3:202,008,334...202,010,005 		JBrowse link
G HOXD3 homeobox D3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:63,432,720...63,452,816
Ensembl chr2B:181,141,538...181,161,604 		JBrowse link
G HPSE heparanase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:40,863,491...40,905,693
Ensembl chr 4:46,709,621...46,755,157 		JBrowse link
G ITGA1 integrin subunit alpha 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:61,073,507...61,247,565
Ensembl chr 5:62,692,673...62,865,769 		JBrowse link
G ITGA10 integrin subunit alpha 10 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:121,847,420...121,866,560
Ensembl chr 1:113,803,019...113,821,908 		JBrowse link
G ITGA11 integrin subunit alpha 11 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:47,260,931...47,390,062
Ensembl chr15:66,031,201...66,128,985 		JBrowse link
G ITGA2 integrin subunit alpha 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:60,935,452...61,040,726
Ensembl chr 5:62,555,370...62,659,720 		JBrowse link
G ITGA2B integrin subunit alpha 2b involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15031111) Ensembl
MGI
TreeGrafter		 PMID:15031111 GO_REF:0000107 GO_REF:0000118 NCBI chr17:13,009,514...13,027,289
Ensembl chr17:13,176,843...13,193,269 		JBrowse link
G ITGA3 integrin subunit alpha 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:44,145,974...44,181,343
Ensembl chr17:49,019,892...49,055,245 		JBrowse link
G ITGA4 integrin subunit alpha 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:68,719,376...68,802,488
Ensembl chr2B:186,530,187...186,612,203 		JBrowse link
G ITGA5 integrin subunit alpha 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:34,326,182...34,350,050
Ensembl chr12:35,052,994...35,075,835 		JBrowse link
G ITGA6 integrin subunit alpha 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16365040) TreeGrafter
MGI		 PMID:16365040 GO_REF:0000118 NCBI chr2B:59,714,348...59,794,762
Ensembl chr2B:177,169,536...177,250,143 		JBrowse link
G ITGA7 integrin subunit alpha 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:33,195,602...33,226,796
Ensembl chr12:33,923,549...33,950,886 		JBrowse link
G ITGA8 integrin subunit alpha 8 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:15,838,320...16,045,206
Ensembl chr10:16,114,999...16,321,360 		JBrowse link
G ITGA9 integrin subunit alpha 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:37,349,120...37,722,572
Ensembl chr 3:37,651,395...38,006,363 		JBrowse link
G ITGAD integrin subunit alpha D involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:23,539,562...23,572,705
Ensembl chr16:31,724,113...31,797,249 		JBrowse link
G ITGAE integrin subunit alpha E involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:3,763,813...3,851,645
Ensembl chr17:3,758,730...3,844,444 		JBrowse link
G ITGAL integrin subunit alpha L involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:24,445,966...24,496,037
Ensembl chr16:30,843,747...30,892,597 		JBrowse link
G ITGAM integrin subunit alpha M involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:23,634,476...23,707,147
Ensembl chr16:31,630,146...31,702,406 		JBrowse link
G ITGAV integrin subunit alpha V involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:73,880,962...73,972,486
Ensembl chr2B:191,680,655...191,773,028 		JBrowse link
G ITGAX integrin subunit alpha X involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:23,574,807...23,612,638
Ensembl chr16:31,724,113...31,797,249 		JBrowse link
G ITGB1 integrin subunit beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17099249)
(PMID:21185282)		 Ensembl
TreeGrafter
MGI		 PMID:17099249 PMID:21185282 GO_REF:0000107 GO_REF:0000118 NCBI chr10:33,023,573...33,081,384
Ensembl chr10:33,608,978...33,644,031 		JBrowse link
G ITGB1BP1 integrin subunit beta 1 binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:9,396,553...9,413,408
Ensembl chr2A:9,556,857...9,577,155 		JBrowse link
G ITGB2 integrin subunit beta 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:31,181,228...31,216,033
Ensembl chr21:44,470,999...44,505,963 		JBrowse link
G ITGB3 integrin subunit beta 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17099249) TreeGrafter
MGI
Ensembl		 PMID:17099249 GO_REF:0000107 GO_REF:0000118 NCBI chr17:10,134,450...10,194,596
Ensembl chr17:10,353,111...10,392,382 		JBrowse link
G ITGB4 integrin subunit beta 4 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr17:69,671,252...69,708,520
Ensembl chr17:75,222,376...75,259,401 		JBrowse link
G ITGB5 integrin subunit beta 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:121,863,676...122,013,438
Ensembl chr 3:128,762,200...128,877,172 		JBrowse link
G ITGB6 integrin subunit beta 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23264742) Ensembl
MGI
TreeGrafter		 PMID:23264742 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:47,386,913...47,496,491
Ensembl chr2B:164,764,251...164,867,426 		JBrowse link
G ITGB7 integrin subunit beta 7 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:35,546,107...35,562,641
Ensembl chr12:36,328,355...36,344,616 		JBrowse link
G ITGB8 integrin subunit beta 8 NOT|involved_in ISO (PMID:7525578) UniProt PMID:7525578 NCBI chr 7:21,019,917...21,105,143
Ensembl chr 7:20,336,031...20,415,666 		JBrowse link
G ITGBL1 integrin subunit beta like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:82,609,493...82,877,474
Ensembl chr13:101,747,760...102,014,605 		JBrowse link
G JAM3 junctional adhesion molecule 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17099249) Ensembl
MGI		 PMID:17099249 GO_REF:0000107 NCBI chr11:128,916,024...129,006,497
Ensembl chr11:132,783,580...132,864,657 		JBrowse link
G L1CAM L1 cell adhesion molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:143,412,303...143,437,090
Ensembl chr  X:153,298,690...153,324,228 		JBrowse link
G LIMS1 LIM zinc finger domain containing 1 acts_upstream_of_or_within ISO (PMID:15976450) MGI PMID:15976450 NCBI chr2A:94,739,338...94,928,835 JBrowse link
G LOC100973165 collagen alpha-1(XIII) chain involved_in ISO (PMID:11956183) UniProt PMID:11956183 NCBI chr10:66,277,302...66,434,410
Ensembl chr10:68,807,425...68,963,642 		JBrowse link
G LOC100974946 mesothelin-like protein involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr16:783,961...798,620 JBrowse link
G LOC100980308 tubulin-specific chaperone cofactor E-like protein involved_in IEA InterPro GO_REF:0000002 NCBI chr11:115,867,514...116,038,193
Ensembl chr11:119,873,943...119,961,175
Ensembl chr11:119,873,943...119,961,175 		JBrowse link
G LOC100992963 tenascin-X acts_upstream_of_or_within ISO (PMID:12419962) MGI PMID:12419962 NCBI chr 6:31,687,994...31,756,279
Ensembl chr 6:32,571,199...32,626,155 		JBrowse link
G LOC103785466 stereocilin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:22,660,952...22,706,416
Ensembl chr15:40,740,387...40,757,999 		JBrowse link
G LYPD3 LY6/PLAUR domain containing 3 acts_upstream_of_or_within ISO PMID:15729693 MGI PMID:15729693 RGD:8553808 NCBI chr19:40,400,919...40,406,756
Ensembl chr19:49,011,152...49,015,381 		JBrowse link
G MADCAM1 mucosal vascular addressin cell adhesion molecule 1 involved_in IEA Ensembl
GOC		 GO_REF:0000107 GO_REF:0000108 NCBI chr19:627,526...636,684
Ensembl chr19:468,026...477,830 		JBrowse link
G MIA MIA SH3 domain containing acts_upstream_of_or_within ISO (PMID:11839810) MGI PMID:11839810 NCBI chr19:37,818,126...37,820,832
Ensembl chr19:46,325,755...46,328,065 		JBrowse link
G MKLN1 muskelin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:123,075,319...123,463,509
Ensembl chr 7:135,806,585...135,968,032 		JBrowse link
G MSLN mesothelin involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr16:777,146...783,449 JBrowse link
G NID1 nidogen 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12243745) InterPro
MGI
Ensembl		 PMID:12243745 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:211,543,294...211,631,769
Ensembl chr 1:216,544,829...216,632,935 		JBrowse link
G NID2 nidogen 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12243745) InterPro
MGI		 PMID:12243745 GO_REF:0000002 NCBI chr14:32,604,392...32,668,121
Ensembl chr14:50,890,317...50,953,830 		JBrowse link
G NPNT nephronectin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11470831)
(PMID:11470831), (PMID:11546798)		 Ensembl
MGI		 PMID:11470831 PMID:11546798 GO_REF:0000107 NCBI chr 4:98,365,727...98,445,746
Ensembl chr 4:108,974,971...109,054,671 		JBrowse link
G OTOA otoancorin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23129639) TreeGrafter
MGI		 PMID:23129639 GO_REF:0000118 NCBI chr16:15,530,399...15,657,565
Ensembl chr16:88,025,201...88,091,449 		JBrowse link
G RHOA ras homolog family member A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:1643657) Ensembl
MGI		 PMID:1643657 GO_REF:0000107 NCBI chr 3:49,282,009...49,339,887 JBrowse link
G SIRPA signal regulatory protein alpha acts_upstream_of_or_within ISO (PMID:11118207) MGI PMID:11118207 NCBI chr20:2,006,994...2,052,894
Ensembl chr20:1,773,271...1,818,106 		JBrowse link
G SNED1 sushi, nidogen and EGF like domains 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr2B:128,253,888...128,351,819
Ensembl chr2B:247,085,509...247,144,421 		JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20525922)
(PMID:20709909)
(PMID:21401944)		 Ensembl
MGI		 PMID:20525922 PMID:20709909 PMID:21401944 GO_REF:0000107 NCBI chr 6:42,763,099...42,773,332
Ensembl chr 6:44,057,192...44,066,768 		JBrowse link
G STRC stereocilin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:22,562,313...22,633,064
Ensembl chr15:40,769,539...40,795,723
Ensembl chr15:40,769,539...40,795,723 		JBrowse link
G SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 9:81,521,495...81,727,869
Ensembl chr 9:109,686,826...109,892,291 		JBrowse link
G TEK TEK receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:9683559) MGI PMID:9683559 NCBI chr 9:26,955,339...27,077,809
Ensembl chr 9:27,561,421...27,683,572 		JBrowse link
G TIAM1 TIAM Rac1 associated GEF 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:17,483,273...17,925,301
Ensembl chr21:30,868,308...31,016,883 		JBrowse link
G TMEM8B transmembrane protein 8B involved_in ISO (PMID:15498789) HGNC-UCL PMID:15498789 NCBI chr 9:35,679,698...35,704,945
Ensembl chr 9:36,482,289...36,507,300 		JBrowse link
G TNN tenascin N involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14531729) Ensembl
MGI		 PMID:14531729 GO_REF:0000107 NCBI chr 1:150,580,248...150,661,687
Ensembl chr 1:154,278,714...154,357,823 		JBrowse link
G TSC1 TSC complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:104,007,708...104,060,938
Ensembl chr 9:132,638,003...132,675,759 		JBrowse link
G VCAM1 vascular cell adhesion molecule 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:103,377,815...103,395,118
Ensembl chr 1:102,091,336...102,107,732 		JBrowse link
G VTN vitronectin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15728191) Ensembl
MGI
TreeGrafter		 PMID:15728191 GO_REF:0000107 GO_REF:0000118 NCBI chr17:28,403,813...28,407,202
Ensembl chr17:28,906,508...28,909,583 		JBrowse link
G ZNF469 zinc finger protein 469 acts_upstream_of_or_within ISO (PMID:34368841) MGI PMID:34368841 NCBI chr16:68,777,496...69,151,995
Ensembl chr16:88,803,202...88,815,390 		JBrowse link
G ZYX zyxin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:135,375,816...135,385,871
Ensembl chr 7:147,865,440...147,875,017 		JBrowse link
calcium-dependent cell-matrix adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAG1 dystroglycan 1 ISO RGD PMID:12177244 RGD:2314895 NCBI chr 3:49,396,180...49,464,689
Ensembl chr 3:50,640,615...50,703,852 		JBrowse link
G TRPM7 transient receptor potential cation channel subfamily M member 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16407977) Ensembl
MGI		 PMID:16407977 GO_REF:0000107 NCBI chr15:29,513,220...29,639,506
Ensembl chr15:47,853,187...47,977,451 		JBrowse link
calcium-independent cell-matrix adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FN1 fibronectin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19651211) Ensembl
MGI		 PMID:19651211 GO_REF:0000107 NCBI chr2B:102,623,568...102,698,747
Ensembl chr2B:221,208,431...221,284,003 		JBrowse link
G ITGB1 integrin subunit beta 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19651211) MGI
Ensembl		 PMID:19651211 GO_REF:0000107 NCBI chr10:33,023,573...33,081,384
Ensembl chr10:33,608,978...33,644,031 		JBrowse link
G VWA2 von Willebrand factor A domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19651211) Ensembl
MGI
TreeGrafter		 PMID:19651211 GO_REF:0000107 GO_REF:0000118 NCBI chr10:110,838,155...110,894,961
Ensembl chr10:114,285,212...114,321,148 		JBrowse link
cell-matrix adhesion involved in ameboidal cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ITGA4 integrin subunit alpha 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:68,719,376...68,802,488
Ensembl chr2B:186,530,187...186,612,203 		JBrowse link
G ITGB7 integrin subunit beta 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:35,546,107...35,562,641
Ensembl chr12:36,328,355...36,344,616 		JBrowse link
endothelial cell-matrix adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 involved_in ISO (MGI:4418720|PMID:20093484) BHF-UCL PMID:20093484 MGI:4418720 NCBI chr 3:64,415,621...64,590,984
Ensembl chr 3:65,792,223...65,967,631 		JBrowse link
G PECAM1 platelet and endothelial cell adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:17563397) MGI PMID:17563397 NCBI chr17:58,417,134...58,526,409
Ensembl chr17:63,511,784...63,579,067 		JBrowse link
focal adhesion assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN1 actinin alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:49,460,390...49,565,986
Ensembl chr14:68,335,694...68,440,836 		JBrowse link
G ACTN2 actinin alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:212,245,742...212,323,387
Ensembl chr 1:217,272,597...217,321,103 		JBrowse link
G ACTN3 actinin alpha 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:61,905,722...61,922,227
Ensembl chr11:65,228,713...65,245,429 		JBrowse link
G AJUBA ajuba LIM protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15728191) Ensembl
MGI		 PMID:15728191 GO_REF:0000107 NCBI chr14:3,791,309...3,802,763
Ensembl chr14:21,889,443...21,900,700 		JBrowse link
G ARHGAP6 Rho GTPase activating protein 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10699171) Ensembl
MGI		 PMID:10699171 GO_REF:0000107 NCBI chr  X:3,767,259...4,291,738
Ensembl chr  X:11,058,207...11,582,115 		JBrowse link
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15292044) Ensembl
MGI		 PMID:15292044 GO_REF:0000107 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100 		JBrowse link
G BCR BCR activator of RhoGEF and GTPase involved_in ISO (PMID:23940119) UniProt PMID:23940119
G CDH11 cadherin 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:45,261,269...45,436,597
Ensembl chr16:64,367,862...64,475,028 		JBrowse link
G CORO2B coronin 2B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29162887) Ensembl
MGI		 PMID:29162887 GO_REF:0000107 NCBI chr15:47,536,641...47,685,357
Ensembl chr15:66,370,374...66,452,545 		JBrowse link
G CTTN cortactin involved_in ISO PMID:18768925 UniProt PMID:18768925 RGD:10047281 NCBI chr11:65,500,074...65,539,158
Ensembl chr11:68,794,162...68,823,857 		JBrowse link
G DLC1 DLC1 Rho GTPase activating protein acts_upstream_of_or_within ISO (PMID:15710412) MGI PMID:15710412 NCBI chr 8:12,282,190...12,809,770
Ensembl chr 8:9,037,742...9,460,233 		JBrowse link
G FERMT2 FERM domain containing kindlin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:33,453,983...33,547,721
Ensembl chr14:51,737,188...51,829,766 		JBrowse link
G ITGA2 integrin subunit alpha 2 ISO RGD PMID:15591055 RGD:8693310 NCBI chr 5:60,935,452...61,040,726
Ensembl chr 5:62,555,370...62,659,720 		JBrowse link
G PDPK1 3-phosphoinositide dependent protein kinase 1 ISO RGD PMID:14585963 RGD:1581775 NCBI chr16:1,394,447...1,463,735 JBrowse link
G PEAK1 pseudopodium enriched atypical kinase 1 involved_in ISO (PMID:23105102) UniProt PMID:23105102 NCBI chr15:56,038,568...56,348,118 JBrowse link
G PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:126,547,793...126,598,618
Ensembl chr 1:130,195,974...130,246,198 		JBrowse link
G PTK2B protein tyrosine kinase 2 beta ISO RGD PMID:14585963 RGD:1581775 NCBI chr 8:26,580,855...26,729,378
Ensembl chr 8:23,869,825...23,932,474 		JBrowse link
G PTPRK protein tyrosine phosphatase receptor type K involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:125,753,656...126,312,124
Ensembl chr 6:129,864,573...130,421,644 		JBrowse link
G PXN paxillin acts_upstream_of_or_within ISO (PMID:14636584) MGI PMID:14636584 NCBI chr12:117,785,614...117,840,816
Ensembl chr12:121,160,295...121,176,667 		JBrowse link
G RCC2 regulator of chromosome condensation 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:16,353,770...16,386,810
Ensembl chr 1:17,409,432...17,432,031 		JBrowse link
G RHOD ras homolog family member D involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:62,418,466...62,433,453
Ensembl chr11:65,736,668...65,754,761 		JBrowse link
G RHPN1 rhophilin Rho GTPase binding protein 1 acts_upstream_of_or_within ISO (PMID:25071083) MGI PMID:25071083 NCBI chr 8:140,115,455...140,131,070
Ensembl chr 8:143,135,016...143,150,235 		JBrowse link
G SORBS1 sorbin and SH3 domain containing 1 involved_in ISO (MGI:1196128|PMID:9461600) UniProt PMID:9461600 MGI:1196128 NCBI chr10:91,922,292...92,172,339
Ensembl chr10:95,432,824...95,559,022 		JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:33,667,614...33,727,126
Ensembl chr20:34,822,271...34,839,634 		JBrowse link
G STON1 stonin 1 acts_upstream_of_or_within ISO (PMID:26437238) MGI PMID:26437238 NCBI chr2A:48,656,425...48,722,288
Ensembl chr2A:49,577,562...49,721,845 		JBrowse link
G TAOK2 TAO kinase 2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:30,347,229...30,366,743 JBrowse link
G TESK2 testis associated actin remodelling kinase 2 involved_in ISO PMID:11418599 UniProt PMID:11418599 RGD:727318 NCBI chr 1:44,646,716...44,794,419
Ensembl chr 1:46,005,185...46,118,811 		JBrowse link
G THSD1 thrombospondin type 1 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:33,442,480...33,472,259
Ensembl chr13:52,301,206...52,330,504 		JBrowse link
G THY1 Thy-1 cell surface antigen involved_in ISO PMID:15093746 UniProt PMID:15093746 RGD:8553684 NCBI chr11:114,253,535...114,259,495
Ensembl chr11:118,180,717...118,186,901 		JBrowse link
G WHAMM WASP homolog associated with actin, golgi membranes and microtubules involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:62,763,534...62,788,639
Ensembl chr15:80,706,760...80,730,006 		JBrowse link
mesangial cell-matrix adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCL21 C-C motif chemokine ligand 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:34,545,248...34,546,801
Ensembl chr 9:35,353,768...35,354,924 		JBrowse link
G CD34 CD34 molecule involved_in ISO PMID:18319274 UniProt PMID:18319274 RGD:8553277 NCBI chr 1:183,459,028...183,489,583
Ensembl chr 1:188,272,551...188,297,384 		JBrowse link
negative regulation of cell-matrix adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACER2 alkaline ceramidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:19,216,891...19,262,477
Ensembl chr 9:19,709,402...19,750,896 		JBrowse link
G ADAM15 ADAM metallopeptidase domain 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:130,398,961...130,410,860
Ensembl chr 1:134,008,959...134,020,467 		JBrowse link
G AJAP1 adherens junctions associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:3,340,904...3,482,242
Ensembl chr 1:4,505,143...4,590,779 		JBrowse link
G BCL6 BCL6 transcription repressor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15860730) Ensembl
MGI		 PMID:15860730 GO_REF:0000107 NCBI chr 3:184,748,135...184,772,375
Ensembl chr 3:193,308,296...193,332,124 		JBrowse link
G CASK calcium/calmodulin dependent serine protein kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:33,967,329...34,374,385
Ensembl chr  X:41,659,295...42,066,570 		JBrowse link
G CDKN2A cyclin dependent kinase inhibitor 2A involved_in ISO (PMID:10205165) BHF-UCL PMID:10205165 NCBI chr 9:21,803,862...21,831,322 JBrowse link
G ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 ISO RGD PMID:12837632 RGD:1299196 NCBI chr 8:116,248,587...116,364,966
Ensembl chr 8:118,998,530...119,114,273 		JBrowse link
G HOXA7 homeobox A7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:27,799,317...27,802,492
Ensembl chr 7:27,396,898...27,402,142 		JBrowse link
G JAG1 jagged canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:10,582,234...10,618,507
Ensembl chr20:10,582,094...10,618,383 		JBrowse link
G MUC4 mucin 4, cell surface associated ISO RGD PMID:9407114 RGD:2303753 NCBI chr 3:193,050,895...193,114,931 JBrowse link
G MYOC myocilin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:147,128,541...147,146,227
Ensembl chr 1:150,841,630...150,858,628 		JBrowse link
G NEXMIF neurite extension and migration factor involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:24071057 GO_REF:0000118 RGD:13442493 NCBI chr  X:63,985,226...64,177,750
Ensembl chr  X:74,107,799...74,114,635 		JBrowse link
G NF1 neurofibromin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17053831) Ensembl
MGI		 PMID:17053831 GO_REF:0000107 NCBI chr17:25,425,081...25,703,689
Ensembl chr17:26,160,855...26,439,295 		JBrowse link
G PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17053831) Ensembl
MGI		 PMID:17053831 GO_REF:0000107 NCBI chr 5:45,701,219...45,786,652
Ensembl chr 5:47,267,286...47,350,960 		JBrowse link
G PLET1 placenta expressed transcript 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:107,126,523...107,141,857
Ensembl chr11:110,971,824...110,984,838 		JBrowse link
G POSTN periostin ISO RGD PMID:15381649 RGD:10040999 NCBI chr13:18,779,297...18,815,207
Ensembl chr13:37,368,030...37,407,212 		JBrowse link
G RASA1 RAS p21 protein activator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:27,980,907...28,104,368
Ensembl chr 5:28,115,159...28,240,321 		JBrowse link
G SEMA3E semaphorin 3E involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:75,329,049...75,612,946
Ensembl chr 7:88,995,049...89,274,241 		JBrowse link
G THBS1 thrombospondin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16150726) MGI
Ensembl		 PMID:16150726 GO_REF:0000107 NCBI chr15:18,521,802...18,538,172
Ensembl chr15:36,776,756...36,793,170 		JBrowse link
negative regulation of endothelial cell-matrix adhesion via fibronectin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MMP12 matrix metallopeptidase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:97,809,644...97,822,063
Ensembl chr11:101,294,475...101,306,762 		JBrowse link
negative regulation of focal adhesion assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVRL1 activin A receptor like type 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:36,839,869...36,856,351
Ensembl chr12:37,615,888...37,631,691 		JBrowse link
G APOD apolipoprotein D involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:192,852,887...192,868,233
Ensembl chr 3:203,152,476...203,168,060 		JBrowse link
G ARHGAP6 Rho GTPase activating protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:3,767,259...4,291,738
Ensembl chr  X:11,058,207...11,582,115 		JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:24859005) UniProt PMID:24859005 NCBI chr 3:33,418,300...33,640,185
Ensembl chr 3:33,721,153...33,938,560 		JBrowse link
G CORO1C coronin 1C involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:106,220,755...106,306,098
Ensembl chr12:109,617,093...109,674,368 		JBrowse link
G DLC1 DLC1 Rho GTPase activating protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:12,282,190...12,809,770
Ensembl chr 8:9,037,742...9,460,233 		JBrowse link
G DMTN dematin actin binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:21,293,759...21,327,600
Ensembl chr 8:18,251,886...18,266,229 		JBrowse link
G DUSP22 dual specificity phosphatase 22 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:107,145...180,777
Ensembl chr 6:242,121...301,248 		JBrowse link
G FAM107A family with sequence similarity 107 member A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:58,494,342...58,557,712
Ensembl chr 3:59,903,602...59,967,013 		JBrowse link
G ITGB1BP1 integrin subunit beta 1 binding protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:9,396,553...9,413,408
Ensembl chr2A:9,556,857...9,577,155 		JBrowse link
G LRP1 LDL receptor related protein 1 ISO RGD PMID:20197276 RGD:13800550 NCBI chr12:31,713,938...31,799,287
Ensembl chr12:31,966,149...32,051,979 		JBrowse link
G MMP14 matrix metallopeptidase 14 ISO RGD PMID:15044209 RGD:1582604 NCBI chr14:3,654,125...3,665,158
Ensembl chr14:21,753,305...21,764,058 		JBrowse link
G PHLDB2 pleckstrin homology like domain family B member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:108,878,798...109,120,501
Ensembl chr 3:115,745,634...116,044,586 		JBrowse link
G PTEN phosphatase and tensin homolog involved_in ISO (PMID:9616126) UniProt PMID:9616126 NCBI chr10:84,587,841...84,689,043
Ensembl chr10:88,093,539...88,194,605 		JBrowse link
G RCC2 regulator of chromosome condensation 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:16,353,770...16,386,810
Ensembl chr 1:17,409,432...17,432,031 		JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase involved_in ISO PMID:21440892 BHF-UCL PMID:21440892 RGD:7248703 NCBI chr20:33,667,614...33,727,126
Ensembl chr20:34,822,271...34,839,634 		JBrowse link
negative regulation of smooth muscle cell-matrix adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOD apolipoprotein D involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:192,852,887...192,868,233
Ensembl chr 3:203,152,476...203,168,060 		JBrowse link
G SERPINE1 serpin family E member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:93,267,517...93,279,728
Ensembl chr 7:106,510,130...106,518,450 		JBrowse link
positive regulation of cell-matrix adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCL21 C-C motif chemokine ligand 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:34,545,248...34,546,801
Ensembl chr 9:35,353,768...35,354,924 		JBrowse link
G CCL25 C-C motif chemokine ligand 25 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:7,307,109...7,363,983
Ensembl chr19:8,208,273...8,217,780 		JBrowse link
G CCL28 C-C motif chemokine ligand 28 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:66,977,643...66,998,420
Ensembl chr 5:72,012,579...72,046,031 		JBrowse link
G CD36 CD36 molecule (CD36 blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:72,566,478...72,643,517
Ensembl chr 7:86,265,114...86,305,865 		JBrowse link
G CDH13 cadherin 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:63,255,482...64,418,053
Ensembl chr16:82,883,184...83,808,996 		JBrowse link
G CDK6 cyclin dependent kinase 6 involved_in ISO (PMID:10205165) BHF-UCL PMID:10205165 NCBI chr 7:84,603,419...84,835,082 JBrowse link
G CIB1 calcium and integrin binding 1 involved_in ISO (MGI:5314162|PMID:22128142) UniProt PMID:22128142 MGI:5314162 NCBI chr15:68,919,377...68,923,213 JBrowse link
G CRIPTO cripto, EGF-CFC family member acts_upstream_of_or_within ISO (PMID:9876177) MGI PMID:9876177 NCBI chr 3:46,473,282...46,478,454
Ensembl chr 3:47,577,949...47,583,126 		JBrowse link
G CSF1 colony stimulating factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17053831) Ensembl
MGI		 PMID:17053831 GO_REF:0000107 NCBI chr 1:112,555,755...112,575,894
Ensembl chr 1:127,764,916...127,781,943 		JBrowse link
G DAG1 dystroglycan 1 ISO RGD PMID:9153251 RGD:11541058 NCBI chr 3:49,396,180...49,464,689
Ensembl chr 3:50,640,615...50,703,852 		JBrowse link
G DISC1 DISC1 scaffold protein ISO RGD PMID:20479754 RGD:5509803 NCBI chr 1:207,180,513...207,594,684
Ensembl chr 1:212,265,520...212,612,079 		JBrowse link
G DMD dystrophin involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:23,728,650...26,338,849
Ensembl chr  X:31,282,415...33,492,733 		JBrowse link
G EMP2 epithelial membrane protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16216233) MGI
Ensembl		 PMID:16216233 GO_REF:0000107 NCBI chr16:9,465,589...9,517,593
Ensembl chr16:10,694,425...10,744,744 		JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18794329) Ensembl
MGI		 PMID:18794329 GO_REF:0000107 NCBI chr2B:6,945,289...7,111,595
Ensembl chr2B:120,521,145...120,687,209 		JBrowse link
G EPHA1 EPH receptor A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:135,385,894...135,403,632
Ensembl chr 7:147,875,363...147,892,745 		JBrowse link
G FERMT1 FERM domain containing kindlin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:6,063,480...6,120,206
Ensembl chr20:5,856,287...5,902,251 		JBrowse link
G FUT1 fucosyltransferase 1 (H blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:45,747,261...45,753,436
Ensembl chr19:54,340,782...54,341,882 		JBrowse link
G GSK3B glycogen synthase kinase 3 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:116,943,205...117,215,001
Ensembl chr 3:123,861,379...124,126,771 		JBrowse link
G ILK integrin linked kinase ISO RGD PMID:18535176 RGD:2301740 NCBI chr11:6,735,735...6,742,922
Ensembl chr11:6,418,717...6,425,788 		JBrowse link
G ITGB3 integrin subunit beta 3 acts_upstream_of_or_within ISO (PMID:22984613) MGI PMID:22984613 NCBI chr17:10,134,450...10,194,596
Ensembl chr17:10,353,111...10,392,382 		JBrowse link
G JUP junction plakoglobin involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:15,527,115...15,559,251
Ensembl chr17:15,747,163...15,777,479 		JBrowse link
G LOC100978919 T-cell surface glycoprotein CD3 epsilon chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:113,142,200...113,153,928
Ensembl chr11:117,074,041...117,085,625 		JBrowse link
G NINJ1 ninjurin 1 acts_upstream_of_or_within ISO (PMID:19557008) MGI PMID:19557008 NCBI chr 9:64,245,086...64,258,614
Ensembl chr 9:92,311,502...92,324,030 		JBrowse link
G PLEKHA2 pleckstrin homology domain containing A2 involved_in ISO (PMID:19786618) UniProt PMID:19786618 NCBI chr 8:38,202,121...38,275,316
Ensembl chr 8:35,377,105...35,446,938 		JBrowse link
G PRKCZ protein kinase C zeta ISO vascular smooth muscle cell adhesion to collagen matrix RGD PMID:16113073 RGD:1642674 NCBI chr 1:763,942...901,531
Ensembl chr 1:1,920,219...2,045,855 		JBrowse link
G PTK2B protein tyrosine kinase 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:26,580,855...26,729,378
Ensembl chr 8:23,869,825...23,932,474 		JBrowse link
G PTPRJ protein tyrosine phosphatase receptor type J involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:47,941,134...48,130,538
Ensembl chr11:48,613,761...48,670,494 		JBrowse link
G SKAP1 src kinase associated phosphoprotein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:9,079,452...9,402,192
Ensembl chr17:9,290,929...9,581,253 		JBrowse link
G TREM1 triggering receptor expressed on myeloid cells 1 ISO RGD PMID:29331667 RGD:127284861 NCBI chr 6:40,861,283...40,874,446
Ensembl chr 6:42,163,337...42,183,091 		JBrowse link
G UTRN utrophin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:142,069,139...142,636,507
Ensembl chr 6:146,793,153...147,351,210 		JBrowse link
positive regulation of endothelial cell-matrix adhesion via fibronectin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DICER1 dicer 1, ribonuclease III ISO RGD PMID:23239824 RGD:149735901 NCBI chr14:75,709,029...75,780,779
Ensembl chr14:95,036,385...95,107,940 		JBrowse link
G FUT1 fucosyltransferase 1 (H blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:45,747,261...45,753,436
Ensembl chr19:54,340,782...54,341,882 		JBrowse link
G GFUS GDP-L-fucose synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:140,366,003...140,371,018
Ensembl chr 8:143,381,054...143,386,008 		JBrowse link
G LOC100976543 CEA cell adhesion molecule 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:38,648,451...39,559,050
Ensembl chr19:47,154,101...47,169,691 		JBrowse link
G RIN2 Ras and Rab interactor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:19,716,071...19,960,598
Ensembl chr20:19,811,284...19,924,256 		JBrowse link
G RRAS RAS related involved_in ISO (PMID:22825554) CACAO PMID:22825554 NCBI chr19:46,649,892...46,654,754
Ensembl chr19:55,569,749...55,573,721 		JBrowse link
positive regulation of focal adhesion assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:101,834,189...102,005,811
Ensembl chr 9:130,484,333...130,652,941 		JBrowse link
G CFL1 cofilin 1 ISO RGD PMID:24093776 RGD:11570550 NCBI chr11:61,215,092...61,218,628
Ensembl chr11:64,544,275...64,550,806 		JBrowse link
G COL16A1 collagen type XVI alpha 1 chain involved_in ISO (PMID:24466237) CACAO PMID:24466237 NCBI chr 1:30,936,368...30,987,855 JBrowse link
G ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 ISO RGD PMID:22139091 RGD:9685417 NCBI chr 8:116,248,587...116,364,966
Ensembl chr 8:118,998,530...119,114,273 		JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18794329) Ensembl
MGI		 PMID:18794329 GO_REF:0000107 NCBI chr2B:6,945,289...7,111,595
Ensembl chr2B:120,521,145...120,687,209 		JBrowse link
G FERMT2 FERM domain containing kindlin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:33,453,983...33,547,721
Ensembl chr14:51,737,188...51,829,766 		JBrowse link
G FMN1 formin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18560567) Ensembl
MGI		 PMID:18560567 GO_REF:0000107 NCBI chr15:11,271,794...11,698,539
Ensembl chr15:30,114,113...30,495,909 		JBrowse link
G HRG histidine rich glycoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:183,701,069...183,712,365
Ensembl chr 3:192,168,299...192,180,539 		JBrowse link
G IQGAP1 IQ motif containing GTPase activating protein 1 ISO RGD PMID:23657573 RGD:11049552 NCBI chr15:69,076,025...69,190,082
Ensembl chr15:88,276,851...88,388,594 		JBrowse link
G ITGB1BP1 integrin subunit beta 1 binding protein 1 involved_in ISO (MGI:5486551|PMID:17654484) UniProt PMID:17654484 MGI:5486551 NCBI chr2A:9,396,553...9,413,408
Ensembl chr2A:9,556,857...9,577,155 		JBrowse link
G KDR kinase insert domain receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:68,813,894...68,861,018
Ensembl chr 4:75,377,375...75,427,109 		JBrowse link
G LIMS1 LIM zinc finger domain containing 1 involved_in ISO (PMID:20926685) UniProt PMID:20926685 NCBI chr2A:94,739,338...94,928,835 JBrowse link
G MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 involved_in ISO (MGI:6189265|PMID:25490267) ARUK-UCL PMID:25490267 MGI:6189265 Ensembl chr2A:102,750,221...102,945,263 JBrowse link
G MYH9 myosin heavy chain 9 ISO RGD PMID:21598299 RGD:12798522 NCBI chr22:17,200,623...17,305,826
Ensembl chr22:35,039,101...35,121,618 		JBrowse link
G MYOC myocilin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:147,128,541...147,146,227
Ensembl chr 1:150,841,630...150,858,628 		JBrowse link
G NRP1 neuropilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:33,298,918...33,456,466
Ensembl chr10:33,883,173...34,039,648 		JBrowse link
G POLDIP2 DNA polymerase delta interacting protein 2 ISO RGD PMID:30354218 RGD:124713558 NCBI chr17:28,416,912...28,427,280
Ensembl chr17:28,919,371...28,928,682 		JBrowse link
G PPM1F protein phosphatase, Mg2+/Mn2+ dependent 1F involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:4,039,032...4,072,165
Ensembl chr22:20,520,022...20,553,128 		JBrowse link
G PTPN11 protein tyrosine phosphatase non-receptor type 11 ISO RGD PMID:16905534 RGD:39456088 NCBI chr12:110,016,364...110,107,462
Ensembl chr12:113,435,669...113,503,762 		JBrowse link
G PTPRJ protein tyrosine phosphatase receptor type J involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:47,941,134...48,130,538
Ensembl chr11:48,613,761...48,670,494 		JBrowse link
G RAC1 Rac family small GTPase 1 involved_in ISO (PMID:23129259) UniProt PMID:23129259 NCBI chr 7:7,039,379...7,068,866 JBrowse link
G ROCK1 Rho associated coiled-coil containing protein kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:14,192,293...14,352,357
Ensembl chr18:17,833,047...17,990,086 		JBrowse link
G S100A10 S100 calcium binding protein A10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:127,341,974...127,353,054
Ensembl chr 1:130,985,312...130,995,130 		JBrowse link
G SDC4 syndecan 4 ISO RGD PMID:10504291 RGD:2312327 NCBI chr20:41,656,406...41,679,549
Ensembl chr20:42,746,281...42,769,737 		JBrowse link
G SMAD3 SMAD family member 3 ISO RGD PMID:15987742 RGD:2300418 NCBI chr15:46,013,764...46,143,126
Ensembl chr15:64,284,949...64,414,185 		JBrowse link
G TEK TEK receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:26,955,339...27,077,809
Ensembl chr 9:27,561,421...27,683,572 		JBrowse link
G THY1 Thy-1 cell surface antigen involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:114,253,535...114,259,495
Ensembl chr11:118,180,717...118,186,901 		JBrowse link
G TSC1 TSC complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:104,007,708...104,060,938
Ensembl chr 9:132,638,003...132,675,759 		JBrowse link
G VEGFA vascular endothelial growth factor A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:43,361,053...43,377,366
Ensembl chr 6:44,650,365...44,666,353 		JBrowse link
G WNT4 Wnt family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:21,310,228...21,335,985
Ensembl chr 1:22,255,056...22,268,801 		JBrowse link
positive regulation of smooth muscle cell-matrix adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EFEMP2 EGF containing fibulin extracellular matrix protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:61,226,755...61,233,181
Ensembl chr11:64,555,877...64,561,950 		JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 ISO RGD PMID:14970114 RGD:11556214 NCBI chr 9:48,480,607...48,943,331
Ensembl chr 9:74,745,761...75,220,502 		JBrowse link
regulation of cell-matrix adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15292044) Ensembl
MGI		 PMID:15292044 GO_REF:0000107 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100 		JBrowse link
G BST1 bone marrow stromal cell antigen 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:10,154,453...10,183,448
Ensembl chr 4:15,451,958...15,480,195 		JBrowse link
G DDR1 discoidin domain receptor tyrosine kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12397034) Ensembl
MGI		 PMID:12397034 GO_REF:0000107 NCBI chr 6:30,625,871...30,645,066
Ensembl chr 6:31,496,047...31,513,455 		JBrowse link
G EMP2 epithelial membrane protein 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:9,465,589...9,517,593
Ensembl chr16:10,694,425...10,744,744 		JBrowse link
G MINK1 misshapen like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:4,879,851...4,944,374
Ensembl chr17:4,868,620...4,932,789 		JBrowse link
G MYF5 myogenic factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16554364) Ensembl
MGI		 PMID:16554364 GO_REF:0000107 NCBI chr12:78,236,945...78,239,701
Ensembl chr12:81,347,324...81,350,389 		JBrowse link
G NF1 neurofibromin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16405917) Ensembl
MGI		 PMID:16405917 GO_REF:0000107 NCBI chr17:25,425,081...25,703,689
Ensembl chr17:26,160,855...26,439,295 		JBrowse link
G ONECUT1 one cut homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17936262) Ensembl
MGI		 PMID:17936262 GO_REF:0000107 NCBI chr15:31,694,830...31,727,644
Ensembl chr15:50,016,010...50,053,062 		JBrowse link
G ONECUT2 one cut homeobox 2 acts_upstream_of_or_within ISO (PMID:17936262) MGI PMID:17936262 NCBI chr18:50,826,110...50,882,127 JBrowse link
G PIK3CB phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25139353)
(PMID:15834429)		 MGI
Ensembl		 PMID:15834429 PMID:25139353 GO_REF:0000107 NCBI chr 3:135,685,120...135,867,096
Ensembl chr 3:143,288,563...143,431,314 		JBrowse link
G PKHD1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin involved_in ISO (PMID:31398719) UniProt PMID:31398719 NCBI chr 6:51,166,516...51,635,057
Ensembl chr 6:52,435,462...52,903,309 		JBrowse link
G THY1 Thy-1 cell surface antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:114,253,535...114,259,495
Ensembl chr11:118,180,717...118,186,901 		JBrowse link
G TSC1 TSC complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:104,007,708...104,060,938
Ensembl chr 9:132,638,003...132,675,759 		JBrowse link
regulation of focal adhesion assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTG1 actin gamma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:75,965,911...75,968,822
Ensembl chr17:81,668,221...81,671,087 		JBrowse link
G CAMSAP3 calmodulin regulated spectrin associated protein family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:6,885,979...6,908,067
Ensembl chr19:7,749,945...7,763,056 		JBrowse link
G CLASP1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:24859005) UniProt PMID:24859005 NCBI chr2B:8,265,626...8,574,282
Ensembl chr2B:121,840,484...122,102,793 		JBrowse link
G CORO1C coronin 1C involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:106,220,755...106,306,098
Ensembl chr12:109,617,093...109,674,368 		JBrowse link
G DAPK3 death associated protein kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:2,984,806...2,996,782
Ensembl chr19:3,934,496...3,946,011 		JBrowse link
G DUSP3 dual specificity phosphatase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:13,618,860...13,631,743
Ensembl chr17:13,784,594...13,797,045 		JBrowse link
G EFNA5 ephrin A5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:102,732,268...103,026,746
Ensembl chr 5:108,548,927...108,598,942 		JBrowse link
G EPHA3 EPH receptor A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:89,261,166...89,629,010
Ensembl chr 3:91,369,239...91,739,056 		JBrowse link
G GPM6B glycoprotein M6B involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:6,377,913...6,544,826
Ensembl chr  X:13,666,192...13,711,964 		JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in ISO (MGI:3834346|PMID:17077323) BHF-UCL PMID:17077323 MGI:3834346 NCBI chr15:11,213,870...11,230,619 JBrowse link
G LDB1 LIM domain binding 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:98,707,470...98,722,771
Ensembl chr10:102,179,757...102,184,047 		JBrowse link
G LIMCH1 LIM and calponin homology domains 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:35,685,904...36,025,582
Ensembl chr 4:41,533,560...41,873,694 		JBrowse link
G MACF1 microtubule actin crosslinking factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:38,369,021...38,771,911
Ensembl chr 1:39,820,394...40,096,558 		JBrowse link
G PEAK1 pseudopodium enriched atypical kinase 1 involved_in ISO (PMID:23105102) UniProt PMID:23105102 NCBI chr15:56,038,568...56,348,118 JBrowse link
G PTK2 protein tyrosine kinase 2 involved_in ISO (PMID:19913511) UniProt PMID:19913511 NCBI chr 8:137,330,777...137,677,306
Ensembl chr 8:140,412,773...140,684,898 		JBrowse link
G PTPRA protein tyrosine phosphatase receptor type A involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:2,962,701...3,125,282
Ensembl chr20:2,801,905...2,888,195 		JBrowse link
G RHOD ras homolog family member D involved_in ISO (MGI:5512821|PMID:23454120) UniProt PMID:23454120 MGI:5512821 NCBI chr11:62,418,466...62,433,453
Ensembl chr11:65,736,668...65,754,761 		JBrowse link
G SLK STE20 like kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:100,566,801...100,628,955
Ensembl chr10:104,027,041...104,088,671 		JBrowse link
G TSC1 TSC complex subunit 1 ISO RGD PMID:15611338 RGD:1601406 NCBI chr 9:104,007,708...104,060,938
Ensembl chr 9:132,638,003...132,675,759 		JBrowse link
G VCL vinculin involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:70,521,259...70,641,917
Ensembl chr10:73,191,375...73,311,296 		JBrowse link
G WDPCP WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24302887) Ensembl
MGI		 PMID:24302887 GO_REF:0000107 NCBI chr2A:63,180,279...63,658,804
Ensembl chr2A:64,325,379...64,785,256 		JBrowse link
regulation of smooth muscle cell-matrix adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLAU plasminogen activator, urokinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:70,433,340...70,441,569
Ensembl chr10:73,105,895...73,113,136 		JBrowse link
smooth muscle cell-matrix adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDR1 discoidin domain receptor tyrosine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:30,625,871...30,645,066
Ensembl chr 6:31,496,047...31,513,455 		JBrowse link
G VTN vitronectin involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:28,403,813...28,407,202
Ensembl chr17:28,906,508...28,909,583 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16447
    cellular process 15499
      cell adhesion 1362
        cell-substrate adhesion 379
          cell-matrix adhesion 235
            calcium-dependent cell-matrix adhesion 2
            calcium-independent cell-matrix adhesion 3
            cell-matrix adhesion involved in ameboidal cell migration + 2
            endothelial cell-matrix adhesion + 9
            focal adhesion assembly + 86
            mesangial cell-matrix adhesion 2
            negative regulation of cell-matrix adhesion + 37
            positive regulation of cell-matrix adhesion + 65
            regulation of cell-matrix adhesion + 128
            smooth muscle cell-matrix adhesion + 7
            synaptic membrane adhesion to extracellular matrix 0
paths to the root