LRP1 (LDL receptor related protein 1) - Rat Genome Database

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Gene: LRP1 (LDL receptor related protein 1) Pan paniscus
Analyze
Symbol: LRP1
Name: LDL receptor related protein 1
RGD ID: 12047591
Description: ENCODES a protein that exhibits coreceptor activity (ortholog); protease binding (ortholog); protein serine/threonine kinase binding (ortholog); INVOLVED IN amyloid-beta clearance (ortholog); aorta morphogenesis (ortholog); apoptotic cell clearance (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH Acute Liver Failure (ortholog); Alzheimer's disease (ortholog); arteriosclerosis (ortholog); FOUND IN apical part of cell (ortholog); axonal growth cone (ortholog); clathrin-coated vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: prolow-density lipoprotein receptor-related protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21037,128,926 - 37,215,816 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11237,124,986 - 37,210,395 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01231,713,938 - 31,799,287 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11231,966,149 - 32,051,979 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,966,149 - 32,051,979 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
amyloid-beta clearance  (ISO)
amyloid-beta clearance by cellular catabolic process  (IEA)
amyloid-beta clearance by transcytosis  (IEA)
aorta morphogenesis  (ISO)
apoptotic cell clearance  (ISO)
astrocyte activation involved in immune response  (ISO)
cardiac septum development  (ISO)
cellular response to amyloid-beta  (ISO)
cerebral cortex development  (ISO)
chemoattraction of axon  (ISO)
cholesterol metabolic process  (ISO)
coronary vasculature development  (ISO)
endocytosis  (IEA)
enzyme-linked receptor protein signaling pathway  (ISO)
lysosomal transport  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of cell-substrate adhesion  (ISO)
negative regulation of cytosolic calcium ion concentration  (ISO)
negative regulation of focal adhesion assembly  (ISO)
negative regulation of gene expression  (ISO)
negative regulation of neuron apoptotic process  (ISO)
negative regulation of neuron projection development  (ISO)
negative regulation of platelet-derived growth factor receptor-beta signaling pathway  (ISO)
negative regulation of SMAD protein signal transduction  (ISO)
negative regulation of smooth muscle cell migration  (ISO)
negative regulation of transforming growth factor beta receptor signaling pathway  (ISO)
negative regulation of Wnt signaling pathway  (ISO)
phagocytosis  (IEA)
positive regulation of amyloid-beta clearance  (ISO)
positive regulation of axon extension  (ISO)
positive regulation of axon extension involved in regeneration  (ISO)
positive regulation of chemokine (C-X-C motif) ligand 2 production  (ISO)
positive regulation of cholesterol efflux  (ISO)
positive regulation of cholesterol import  (ISO)
positive regulation of collateral sprouting of injured axon  (ISO)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of endocytosis  (IEA)
positive regulation of ERK1 and ERK2 cascade  (ISO)
positive regulation of insulin secretion involved in cellular response to glucose stimulus  (ISO)
positive regulation of lipid transport  (ISO)
positive regulation of lysosomal protein catabolic process  (IEA)
positive regulation of neuron projection development  (ISO)
positive regulation of phagocytosis  (ISO)
positive regulation of protein localization to plasma membrane  (IEA)
positive regulation of protein transport  (ISO)
positive regulation of Schwann cell migration  (ISO)
positive regulation of transcytosis  (ISO)
positive regulation of vascular associated smooth muscle cell migration  (ISO)
receptor-mediated endocytosis  (IEA,ISO)
regulation of actin cytoskeleton organization  (ISO)
regulation of cholesterol transport  (ISO)
regulation of phospholipase A2 activity  (ISO)
regulation of postsynaptic neurotransmitter receptor internalization  (ISO)
regulation of pulmonary blood vessel remodeling  (ISO)
transport across blood-brain barrier  (ISO)
vesicle-mediated transport  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LRP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21037,128,926 - 37,215,816 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11237,124,986 - 37,210,395 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01231,713,938 - 31,799,287 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11231,966,149 - 32,051,979 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,966,149 - 32,051,979 (-)Ensemblpanpan1.1panPan2
LRP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,128,483 - 57,213,361 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,128,483 - 57,213,361 (+)EnsemblGRCh38hg38GRCh38
GRCh371257,522,266 - 57,607,144 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,808,549 - 55,893,409 (+)NCBINCBI36Build 36hg18NCBI36
Build 341255,808,548 - 55,893,390NCBI
Celera1257,176,220 - 57,261,424 (+)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,625,579 - 54,646,229 (+)NCBIHuRef
HuRef1254,560,642 - 54,624,427 (+)NCBIHuRef
CHM1_11257,489,966 - 57,575,252 (+)NCBICHM1_1
T2T-CHM13v2.01257,096,318 - 57,181,610 (+)NCBIT2T-CHM13v2.0
Lrp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,374,026 - 127,457,158 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,374,030 - 127,457,017 (-)EnsemblGRCm39 Ensembl
GRCm3810127,538,157 - 127,621,148 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,538,161 - 127,621,148 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710126,975,213 - 127,058,204 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610126,941,137 - 127,024,078 (-)NCBIMGSCv36mm8
Celera10129,930,007 - 130,012,542 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.52NCBI
Lrp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,265,639 - 65,346,196 (-)NCBIGRCr8
mRatBN7.2763,380,325 - 63,461,029 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,380,356 - 63,460,910 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx765,269,622 - 65,350,191 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,472,045 - 67,552,607 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,273,181 - 67,353,771 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,846,313 - 70,927,028 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,846,344 - 70,926,903 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0771,018,808 - 71,099,367 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,520,575 - 67,601,549 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,541,343 - 67,622,669 (-)NCBI
Celera760,519,175 - 60,599,687 (-)NCBICelera
Cytogenetic Map7q22NCBI
Lrp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554584,861,431 - 4,941,146 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554584,861,431 - 4,941,939 (+)NCBIChiLan1.0ChiLan1.0
LRP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,260,256 - 1,341,705 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,260,719 - 1,352,271 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,324,330 - 1,405,506 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,270,934 - 1,352,176 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,270,727 - 1,352,186 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,247,639 - 1,328,819 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,489,631 - 1,570,787 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,614,746 - 1,695,694 (+)NCBIUU_Cfam_GSD_1.0
Lrp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,463,638 - 57,543,337 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,327,374 - 1,406,456 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,326,900 - 1,407,236 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1522,435,636 - 22,519,276 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,186,409 - 24,202,094 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,039,147 - 53,125,041 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,039,364 - 53,125,776 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037192,847,266 - 192,933,317 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,734,263 - 10,812,763 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480210,734,907 - 10,812,888 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003824883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000035466   ⟹   ENSPPAP00000012800
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1231,966,149 - 32,051,979 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000035524   ⟹   ENSPPAP00000012857
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1231,966,957 - 32,044,545 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000035531   ⟹   ENSPPAP00000012864
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1231,966,957 - 32,042,045 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000035550   ⟹   ENSPPAP00000012883
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1231,966,957 - 32,042,045 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000035557   ⟹   ENSPPAP00000012890
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1231,966,957 - 32,042,045 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000035567   ⟹   ENSPPAP00000012900
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1232,019,190 - 32,046,096 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000035570   ⟹   ENSPPAP00000012903
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1232,030,741 - 32,051,502 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000035572   ⟹   ENSPPAP00000012905
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1232,031,451 - 32,051,502 (-)Ensembl
RefSeq Acc Id: XM_003824883   ⟹   XP_003824931
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21037,128,926 - 37,215,816 (-)NCBI
NHGRI_mPanPan11237,124,986 - 37,210,395 (-)NCBI
Mhudiblu_PPA_v01231,713,938 - 31,799,287 (-)NCBI
PanPan1.11231,966,149 - 32,051,979 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003824931   ⟸   XM_003824883
- UniProtKB: A0A2R9A7D0 (UniProtKB/TrEMBL),   A0A2R9A6E1 (UniProtKB/TrEMBL),   A0A2R9ABN3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000012800   ⟸   ENSPPAT00000035466
Ensembl Acc Id: ENSPPAP00000012857   ⟸   ENSPPAT00000035524
Ensembl Acc Id: ENSPPAP00000012900   ⟸   ENSPPAT00000035567
Ensembl Acc Id: ENSPPAP00000012890   ⟸   ENSPPAT00000035557
Ensembl Acc Id: ENSPPAP00000012883   ⟸   ENSPPAT00000035550
Ensembl Acc Id: ENSPPAP00000012864   ⟸   ENSPPAT00000035531
Ensembl Acc Id: ENSPPAP00000012905   ⟸   ENSPPAT00000035572
Ensembl Acc Id: ENSPPAP00000012903   ⟸   ENSPPAT00000035570
Protein Domains
EGF-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029361 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000035466.1 UniProtKB/TrEMBL
  ENSPPAT00000035524.1 UniProtKB/TrEMBL
  ENSPPAT00000035531.1 UniProtKB/TrEMBL
  ENSPPAT00000035550.1 UniProtKB/TrEMBL
  ENSPPAT00000035557.1 UniProtKB/TrEMBL
  ENSPPAT00000035567.1 UniProtKB/TrEMBL
  ENSPPAT00000035570.1 UniProtKB/TrEMBL
  ENSPPAT00000035572.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.30 UniProtKB/TrEMBL
  4.10.400.10 UniProtKB/TrEMBL
  EGF-type module UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/TrEMBL
  cEGF UniProtKB/TrEMBL
  DUF5050 UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  LDL_receptor-like_sf UniProtKB/TrEMBL
  LDLR-related UniProtKB/TrEMBL
  LDLR_class-A_CS UniProtKB/TrEMBL
  LDLR_classB_rpt UniProtKB/TrEMBL
  LDrepeatLR_classA_rpt UniProtKB/TrEMBL
  NOTCH1_EGF-like UniProtKB/TrEMBL
KEGG Report pps:100988739 UniProtKB/TrEMBL
NCBI Gene LRP1 ENTREZGENE
PANTHER LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 1B UniProtKB/TrEMBL
  LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED UniProtKB/TrEMBL
  MEGALIN, ISOFORM A UniProtKB/TrEMBL
Pfam cEGF UniProtKB/TrEMBL
  DUF5050 UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  FXa_inhibition UniProtKB/TrEMBL
  Ldl_recept_a UniProtKB/TrEMBL
  Ldl_recept_b UniProtKB/TrEMBL
PRINTS LDLRECEPTOR UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  LDLRA_1 UniProtKB/TrEMBL
  LDLRA_2 UniProtKB/TrEMBL
  LDLRB UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  LDLa UniProtKB/TrEMBL
  SM00135 UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
  SSF57424 UniProtKB/TrEMBL
  YWTD domain UniProtKB/TrEMBL
UniProt A0A2R9A6E1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A6G1_PANPA UniProtKB/TrEMBL
  A0A2R9A6I8_PANPA UniProtKB/TrEMBL
  A0A2R9A7D0 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A7M4_PANPA UniProtKB/TrEMBL
  A0A2R9A7N5_PANPA UniProtKB/TrEMBL
  A0A2R9A7P0_PANPA UniProtKB/TrEMBL
  A0A2R9ABN3 ENTREZGENE, UniProtKB/TrEMBL