Lrp1 (LDL receptor related protein 1) - Rat Genome Database

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Gene: Lrp1 (LDL receptor related protein 1) Ictidomys tridecemlineatus
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Symbol: Lrp1
Name: LDL receptor related protein 1
RGD ID: 12563538
Description: ENCODES a protein that exhibits coreceptor activity (ortholog); protease binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN amyloid-beta clearance (ortholog); aorta morphogenesis (ortholog); apoptotic cell clearance (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH Acute Liver Failure (ortholog); Alzheimer's disease (ortholog); arteriosclerosis (ortholog); FOUND IN apical part of cell (ortholog); axonal growth cone (ortholog); clathrin-coated vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LDL receptor related protein 1, transcript variant X1; LDL receptor related protein 1, transcript variant X2; prolow-density lipoprotein receptor-related protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,463,638 - 57,543,337 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,327,374 - 1,406,456 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,326,900 - 1,407,236 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
amyloid-beta clearance  (ISO)
amyloid-beta clearance by cellular catabolic process  (IEA)
amyloid-beta clearance by transcytosis  (IEA)
aorta morphogenesis  (ISO)
apoptotic cell clearance  (ISO)
astrocyte activation involved in immune response  (ISO)
cardiac septum development  (ISO)
cellular lipid catabolic process  (ISO)
cellular response to amyloid-beta  (ISO)
cerebral cortex development  (ISO)
chemoattraction of axon  (ISO)
cholesterol metabolic process  (ISO)
coronary vasculature development  (ISO)
endocytosis  (IEA)
enzyme-linked receptor protein signaling pathway  (ISO)
lysosomal transport  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of cell-substrate adhesion  (ISO)
negative regulation of cytosolic calcium ion concentration  (ISO)
negative regulation of focal adhesion assembly  (ISO)
negative regulation of gene expression  (ISO)
negative regulation of neuron apoptotic process  (ISO)
negative regulation of neuron projection development  (ISO)
negative regulation of platelet-derived growth factor receptor-beta signaling pathway  (ISO)
negative regulation of SMAD protein signal transduction  (ISO)
negative regulation of smooth muscle cell migration  (ISO)
negative regulation of transforming growth factor beta receptor signaling pathway  (ISO)
negative regulation of Wnt signaling pathway  (ISO)
phagocytosis  (IEA)
positive regulation of amyloid-beta clearance  (ISO)
positive regulation of axon extension  (ISO)
positive regulation of axon extension involved in regeneration  (ISO)
positive regulation of chemokine (C-X-C motif) ligand 2 production  (ISO)
positive regulation of cholesterol efflux  (ISO)
positive regulation of cholesterol import  (ISO)
positive regulation of collateral sprouting of injured axon  (ISO)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of endocytosis  (IEA)
positive regulation of ERK1 and ERK2 cascade  (ISO)
positive regulation of insulin secretion involved in cellular response to glucose stimulus  (ISO)
positive regulation of lipid transport  (ISO)
positive regulation of lysosomal protein catabolic process  (IEA)
positive regulation of neuron projection development  (ISO)
positive regulation of phagocytosis  (ISO)
positive regulation of protein localization to plasma membrane  (IEA)
positive regulation of protein transport  (ISO)
positive regulation of Schwann cell migration  (ISO)
positive regulation of transcytosis  (ISO)
positive regulation of vascular associated smooth muscle cell migration  (ISO)
protein kinase C-activating G protein-coupled receptor signaling pathway  (ISO)
receptor-mediated endocytosis  (IEA,ISO)
regulation of actin cytoskeleton organization  (ISO)
regulation of cholesterol transport  (ISO)
regulation of postsynaptic neurotransmitter receptor internalization  (ISO)
regulation of pulmonary blood vessel remodeling  (ISO)
transport across blood-brain barrier  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Lrp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,463,638 - 57,543,337 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,327,374 - 1,406,456 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,326,900 - 1,407,236 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,128,483 - 57,213,361 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,128,483 - 57,213,361 (+)EnsemblGRCh38hg38GRCh38
GRCh371257,522,266 - 57,607,144 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,808,549 - 55,893,409 (+)NCBINCBI36Build 36hg18NCBI36
Build 341255,808,548 - 55,893,390NCBI
Celera1257,176,220 - 57,261,424 (+)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,625,579 - 54,646,229 (+)NCBIHuRef
HuRef1254,560,642 - 54,624,427 (+)NCBIHuRef
CHM1_11257,489,966 - 57,575,252 (+)NCBICHM1_1
T2T-CHM13v2.01257,096,318 - 57,181,610 (+)NCBIT2T-CHM13v2.0
Lrp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,374,026 - 127,457,158 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,374,030 - 127,457,017 (-)EnsemblGRCm39 Ensembl
GRCm3810127,538,157 - 127,621,148 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,538,161 - 127,621,148 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710126,975,213 - 127,058,204 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610126,941,137 - 127,024,078 (-)NCBIMGSCv36mm8
Celera10129,930,007 - 130,012,542 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.52NCBI
Lrp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,265,639 - 65,346,196 (-)NCBIGRCr8
mRatBN7.2763,380,325 - 63,461,029 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,380,356 - 63,460,910 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx765,269,622 - 65,350,191 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,472,045 - 67,552,607 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,273,181 - 67,353,771 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,846,313 - 70,927,028 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,846,344 - 70,926,903 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0771,018,808 - 71,099,367 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,520,575 - 67,601,549 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,541,343 - 67,622,669 (-)NCBI
Celera760,519,175 - 60,599,687 (-)NCBICelera
Cytogenetic Map7q22NCBI
Lrp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554584,861,431 - 4,941,146 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554584,861,431 - 4,941,939 (+)NCBIChiLan1.0ChiLan1.0
LRP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21037,128,926 - 37,215,816 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11237,124,986 - 37,210,395 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01231,713,938 - 31,799,287 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11231,966,149 - 32,051,979 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,966,149 - 32,051,979 (-)Ensemblpanpan1.1panPan2
LRP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,260,256 - 1,341,705 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,260,719 - 1,352,271 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,324,330 - 1,405,506 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,270,934 - 1,352,176 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,270,727 - 1,352,186 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,247,639 - 1,328,819 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,489,631 - 1,570,787 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,614,746 - 1,695,694 (+)NCBIUU_Cfam_GSD_1.0
LRP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1522,435,636 - 22,519,276 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,186,409 - 24,202,094 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,039,147 - 53,125,041 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,039,364 - 53,125,776 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037192,847,266 - 192,933,317 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,734,263 - 10,812,763 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480210,734,907 - 10,812,888 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000013380   ⟹   ENSSTOP00000011988
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366461,327,374 - 1,406,456 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000035131   ⟹   ENSSTOP00000030863
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366461,327,374 - 1,406,456 (+)Ensembl
RefSeq Acc Id: XM_005335662   ⟹   XP_005335719
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494557,463,638 - 57,543,337 (-)NCBI
SpeTri2.0NW_0049366461,326,916 - 1,407,236 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040280453   ⟹   XP_040136387
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494557,463,639 - 57,543,337 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005335719 (Get FASTA)   NCBI Sequence Viewer  
  XP_040136387 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000011988.3
  ENSSTOP00000030863.1
GenBank Protein KAG3291567 (Get FASTA)   NCBI Sequence Viewer  
  KAG3291568 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005335719   ⟸   XM_005335662
- Peptide Label: isoform X1
- UniProtKB: I3MKW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040136387   ⟸   XM_040280453
- Peptide Label: isoform X2
- UniProtKB: I3MKW3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000030863   ⟸   ENSSTOT00000035131
RefSeq Acc Id: ENSSTOP00000011988   ⟸   ENSSTOT00000013380
Protein Domains
EGF-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013305 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013380.3 UniProtKB/TrEMBL
  ENSSTOT00000035131.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.30 UniProtKB/TrEMBL
  4.10.400.10 UniProtKB/TrEMBL
  EGF-type module UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/TrEMBL
  cEGF UniProtKB/TrEMBL
  DUF5050 UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  LDL_receptor-like_sf UniProtKB/TrEMBL
  LDLR_class-A_CS UniProtKB/TrEMBL
  LDLR_classB_rpt UniProtKB/TrEMBL
  LDrepeatLR_classA_rpt UniProtKB/TrEMBL
NCBI Gene Lrp1 ENTREZGENE
PANTHER LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 1B UniProtKB/TrEMBL
  LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED UniProtKB/TrEMBL
  MEGALIN, ISOFORM A UniProtKB/TrEMBL
Pfam cEGF UniProtKB/TrEMBL
  DUF5050 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  FXa_inhibition UniProtKB/TrEMBL
  Ldl_recept_a UniProtKB/TrEMBL
  Ldl_recept_b UniProtKB/TrEMBL
PRINTS LDLRECEPTOR UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  LDLRA_1 UniProtKB/TrEMBL
  LDLRA_2 UniProtKB/TrEMBL
  LDLRB UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  LDLa UniProtKB/TrEMBL
  SM00135 UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
  SSF57424 UniProtKB/TrEMBL
  YWTD domain UniProtKB/TrEMBL
UniProt A0A287DBE3_ICTTR UniProtKB/TrEMBL
  I3MKW3 ENTREZGENE, UniProtKB/TrEMBL