LRP1 (LDL receptor related protein 1) - Rat Genome Database

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Pathways
Gene: LRP1 (LDL receptor related protein 1) Sus scrofa
Analyze
Symbol: LRP1
Name: LDL receptor related protein 1
RGD ID: 13997726
Description: ENCODES a protein that exhibits alpha-2 macroglobulin receptor activity (ortholog); apolipoprotein binding (ortholog); cargo receptor activity (ortholog); INVOLVED IN amyloid-beta clearance (ortholog); amyloid-beta clearance by cellular catabolic process (ortholog); amyloid-beta clearance by transcytosis (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH Acute Liver Failure (ortholog); alcohol use disorder (ortholog); alcoholic hepatitis (ortholog); FOUND IN apical part of cell (ortholog); axonal growth cone (ortholog); basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: low density lipoprotein receptor-related protein 1; prolow-density lipoprotein receptor-related protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1522,435,636 - 22,519,276 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,186,409 - 24,202,094 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
amyloid-beta clearance  (ISO)
amyloid-beta clearance by cellular catabolic process  (ISO)
amyloid-beta clearance by transcytosis  (ISO)
aorta morphogenesis  (ISO)
apoptotic cell clearance  (ISO)
apoptotic process  (ISO)
astrocyte activation involved in immune response  (ISO)
atrioventricular valve development  (ISO)
cardiac septum development  (ISO)
cell migration  (ISO)
cell motility  (ISO)
cell population proliferation  (ISO)
cellular response to amyloid-beta  (ISO)
cerebral cortex development  (ISO)
chemoattraction of axon  (ISO)
cholesterol metabolic process  (ISO)
coronary vasculature development  (ISO)
endocytosis  (IEA)
enzyme-linked receptor protein signaling pathway  (ISO)
gene expression  (ISO)
heart development  (ISO)
lysosomal transport  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of cell-substrate adhesion  (ISO)
negative regulation of cytosolic calcium ion concentration  (ISO)
negative regulation of focal adhesion assembly  (ISO)
negative regulation of gene expression  (ISO)
negative regulation of neuron apoptotic process  (ISO)
negative regulation of neuron projection development  (ISO)
negative regulation of platelet-derived growth factor receptor-beta signaling pathway  (ISO)
negative regulation of SMAD protein signal transduction  (ISO)
negative regulation of smooth muscle cell migration  (ISO)
negative regulation of transforming growth factor beta receptor signaling pathway  (ISO)
negative regulation of Wnt signaling pathway  (ISO)
outflow tract morphogenesis  (ISO)
phagocytosis  (ISO)
positive regulation of amyloid-beta clearance  (ISO)
positive regulation of axon extension  (ISO)
positive regulation of axon extension involved in regeneration  (ISO)
positive regulation of chemokine (C-X-C motif) ligand 2 production  (ISO)
positive regulation of cholesterol efflux  (ISO)
positive regulation of cholesterol import  (ISO)
positive regulation of collateral sprouting of injured axon  (ISO)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of endocytosis  (ISO)
positive regulation of ERK1 and ERK2 cascade  (ISO)
positive regulation of insulin secretion involved in cellular response to glucose stimulus  (ISO)
positive regulation of lipid transport  (ISO)
positive regulation of lysosomal protein catabolic process  (ISO)
positive regulation of neuron projection development  (ISO)
positive regulation of phagocytosis  (ISO)
positive regulation of protein localization to plasma membrane  (ISO)
positive regulation of protein transport  (ISO)
positive regulation of reverse cholesterol transport  (ISO)
positive regulation of Schwann cell migration  (ISO)
positive regulation of transcytosis  (ISO)
positive regulation of transport  (IEA)
positive regulation of vascular associated smooth muscle cell migration  (ISO)
receptor-mediated endocytosis  (IEA,ISO)
regulation of actin cytoskeleton organization  (ISO)
regulation of endocytosis  (IEA)
regulation of extracellular matrix organization  (ISO)
regulation of macromolecule metabolic process  (IEA)
regulation of postsynaptic neurotransmitter receptor internalization  (ISO)
regulation of pulmonary blood vessel remodeling  (ISO)
transport across blood-brain barrier  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21353438   PMID:22301074   PMID:22454363   PMID:23225066  


Genomics

Comparative Map Data
LRP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1522,435,636 - 22,519,276 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,186,409 - 24,202,094 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,128,483 - 57,213,361 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,128,483 - 57,213,361 (+)Ensemblhg38GRCh38
GRCh371257,522,266 - 57,607,144 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,808,549 - 55,893,409 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341255,808,548 - 55,893,390NCBI
Celera1257,176,220 - 57,261,424 (+)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,625,579 - 54,646,229 (+)NCBIHuRef
HuRef1254,560,642 - 54,624,427 (+)NCBIHuRef
CHM1_11257,489,966 - 57,575,252 (+)NCBICHM1_1
T2T-CHM13v2.01257,096,318 - 57,181,610 (+)NCBIT2T-CHM13v2.0
Lrp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,374,026 - 127,457,158 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,374,030 - 127,457,017 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3810127,538,157 - 127,621,148 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,538,161 - 127,621,148 (-)Ensemblmm10GRCm38
MGSCv3710126,975,213 - 127,058,204 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3610126,941,137 - 127,024,078 (-)NCBIMGSCv36mm8
Celera10129,930,007 - 130,012,542 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.52NCBI
Lrp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,265,639 - 65,346,196 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl765,265,639 - 65,346,196 (-)EnsemblGRCr8
mRatBN7.2763,380,325 - 63,461,029 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,380,356 - 63,460,910 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx765,269,622 - 65,350,191 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,472,045 - 67,552,607 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,273,181 - 67,353,771 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,846,313 - 70,927,028 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,846,344 - 70,926,903 (-)Ensemblrn6Rnor6.0
Rnor_5.0771,018,808 - 71,099,367 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4767,520,575 - 67,601,549 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera760,519,175 - 60,599,687 (-)NCBICelera
RGSC_v3.1767,541,343 - 67,622,669 (-)NCBI
Cytogenetic Map7q22NCBI
Lrp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554584,861,431 - 4,941,146 (+)Ensembl
ChiLan1.0NW_0049554584,861,431 - 4,941,939 (+)NCBIChiLan1.0ChiLan1.0
LRP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21037,128,926 - 37,215,816 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11237,124,986 - 37,210,395 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01231,713,938 - 31,799,287 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11231,966,149 - 32,051,979 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,966,149 - 32,051,979 (-)EnsemblpanPan2panpan1.1
LRP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,260,256 - 1,341,705 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,260,719 - 1,352,271 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha101,324,330 - 1,405,506 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0101,270,934 - 1,352,176 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,270,727 - 1,352,186 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,247,639 - 1,328,819 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,489,631 - 1,570,787 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,614,746 - 1,695,694 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lrp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,463,638 - 57,543,337 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,327,374 - 1,406,456 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,326,900 - 1,407,236 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,039,147 - 53,125,041 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,039,364 - 53,125,776 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037192,847,266 - 192,933,317 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,734,263 - 10,812,763 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462480210,734,907 - 10,812,888 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Lrp1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11205,988,653 - 206,069,334 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in LRP1
1563 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_021091826   ⟹   XP_020947485
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1522,435,636 - 22,519,276 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020947485   ⟸   XM_021091826
- UniProtKB: A0A480YRT7 (UniProtKB/TrEMBL),   A0A8D1W3Z2 (UniProtKB/TrEMBL),   K9IVL7 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
EGF-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00015068508 UniProtKB/TrEMBL
  ENSSSCG00025017023 UniProtKB/TrEMBL
  ENSSSCG00030048465 UniProtKB/TrEMBL
  ENSSSCG00035067055 UniProtKB/TrEMBL
  ENSSSCG00040010681 UniProtKB/TrEMBL
  ENSSSCG00045031402 UniProtKB/TrEMBL
  ENSSSCG00050008128 UniProtKB/TrEMBL
  ENSSSCG00055016485 UniProtKB/TrEMBL
  ENSSSCG00060055300 UniProtKB/TrEMBL
  ENSSSCG00065019948 UniProtKB/TrEMBL
  ENSSSCG00070029176 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00015092070.1 UniProtKB/TrEMBL
  ENSSSCT00015093076.1 UniProtKB/TrEMBL
  ENSSSCT00015094294.1 UniProtKB/TrEMBL
  ENSSSCT00015095221.1 UniProtKB/TrEMBL
  ENSSSCT00015096764.1 UniProtKB/TrEMBL
  ENSSSCT00015096792.1 UniProtKB/TrEMBL
  ENSSSCT00025023323.1 UniProtKB/TrEMBL
  ENSSSCT00030067791.1 UniProtKB/TrEMBL
  ENSSSCT00030068120.1 UniProtKB/TrEMBL
  ENSSSCT00030068392.1 UniProtKB/TrEMBL
  ENSSSCT00030068650.1 UniProtKB/TrEMBL
  ENSSSCT00030068973.1 UniProtKB/TrEMBL
  ENSSSCT00035090458.1 UniProtKB/TrEMBL
  ENSSSCT00040013985.1 UniProtKB/TrEMBL
  ENSSSCT00045054614.1 UniProtKB/TrEMBL
  ENSSSCT00050011123.1 UniProtKB/TrEMBL
  ENSSSCT00055034036.1 UniProtKB/TrEMBL
  ENSSSCT00060075366.1 UniProtKB/TrEMBL
  ENSSSCT00060075479.1 UniProtKB/TrEMBL
  ENSSSCT00060075602.1 UniProtKB/TrEMBL
  ENSSSCT00060075725.1 UniProtKB/TrEMBL
  ENSSSCT00060075809.1 UniProtKB/TrEMBL
  ENSSSCT00065026739.1 UniProtKB/TrEMBL
  ENSSSCT00070058607.1 UniProtKB/TrEMBL
  ENSSSCT00070058613.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.30 UniProtKB/TrEMBL
  4.10.400.10 UniProtKB/TrEMBL
  EGF-type module UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/TrEMBL
  cEGF UniProtKB/TrEMBL
  DUF5050 UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  LDL_receptor-like_sf UniProtKB/TrEMBL
  LDLR-related UniProtKB/TrEMBL
  LDLR_class-A_CS UniProtKB/TrEMBL
  LDLR_classB_rpt UniProtKB/TrEMBL
  LDrepeatLR_classA_rpt UniProtKB/TrEMBL
  NOTCH1_EGF-like UniProtKB/TrEMBL
NCBI Gene LRP1 ENTREZGENE
PANTHER LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED UniProtKB/TrEMBL
  LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 1B UniProtKB/TrEMBL
  LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED UniProtKB/TrEMBL
Pfam cEGF UniProtKB/TrEMBL
  DUF5050 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  FXa_inhibition UniProtKB/TrEMBL
  Ldl_recept_a UniProtKB/TrEMBL
  Ldl_recept_b UniProtKB/TrEMBL
PRINTS LDLRECEPTOR UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  LDLRA_1 UniProtKB/TrEMBL
  LDLRA_2 UniProtKB/TrEMBL
  LDLRB UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  LDLa UniProtKB/TrEMBL
  SM00135 UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
  SSF57424 UniProtKB/TrEMBL
  YWTD domain UniProtKB/TrEMBL
UniProt A0A480YRT7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W838_PIG UniProtKB/TrEMBL
  A0A8D0JN16_PIG UniProtKB/TrEMBL
  A0A8D0PVI5_PIG UniProtKB/TrEMBL
  A0A8D0X548_PIG UniProtKB/TrEMBL
  A0A8D0X5E9_PIG UniProtKB/TrEMBL
  A0A8D1W1P1_PIG UniProtKB/TrEMBL
  A0A8D1W3Z2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XZW2_PIG UniProtKB/TrEMBL
  K9IVL7 ENTREZGENE, UniProtKB/TrEMBL