ITGA7 (integrin subunit alpha 7) - Rat Genome Database
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Pathways
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Gene: ITGA7 (integrin subunit alpha 7) Pan paniscus
Analyze
Symbol: ITGA7
Name: integrin subunit alpha 7
RGD ID: 11870670
Description: ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); integrin binding (ortholog); laminin binding (ortholog); INVOLVED IN blood vessel morphogenesis (ortholog); cell adhesion (ortholog); cell migration (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH arteriosclerosis (ortholog); cardiomyopathy (ortholog); Colonic Neoplasms (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); integrin alpha7-beta1 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: integrin alpha-7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11233,923,549 - 33,950,892 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1233,923,549 - 33,950,886 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01233,195,602 - 33,226,796 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
ITGA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11233,923,549 - 33,950,892 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1233,923,549 - 33,950,886 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01233,195,602 - 33,226,796 (+)NCBIMhudiblu_PPA_v0panPan3
ITGA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1255,684,568 - 55,716,043 (-)EnsemblGRCh38hg38GRCh38
GRCh381255,684,568 - 55,716,037 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371256,078,352 - 56,106,192 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,364,619 - 54,387,894 (-)NCBINCBI36hg18NCBI36
Build 341254,364,622 - 54,387,894NCBI
Celera1255,730,824 - 55,758,560 (-)NCBI
Cytogenetic Map12q13.2NCBI
HuRef1253,117,170 - 53,144,908 (-)NCBIHuRef
CHM1_11256,045,138 - 56,072,879 (-)NCBICHM1_1
Itga7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,769,633 - 128,794,155 (+)NCBIGRCm39mm39
GRCm39 Ensembl10128,769,687 - 128,794,151 (+)Ensembl
GRCm3810128,933,421 - 128,958,286 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,933,818 - 128,958,282 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710128,370,869 - 128,395,342 (+)NCBIGRCm37mm9NCBIm37
MGSCv3610128,336,767 - 128,361,231 (+)NCBImm8
Celera10131,326,513 - 131,351,034 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.2NCBI
Itga7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.271,360,125 - 1,388,886 (+)NCBI
Rnor_6.0 Ensembl73,355,116 - 3,384,675 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.073,355,079 - 3,383,886 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.073,325,268 - 3,354,361 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.472,230,747 - 2,269,403 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.172,230,888 - 2,269,401 (+)NCBI
Celera71,231,167 - 1,259,461 (+)NCBICelera
Cytogenetic Map7q11NCBI
Itga7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,321,259 - 3,343,275 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554583,322,735 - 3,343,275 (-)NCBIChiLan1.0ChiLan1.0
ITGA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1091,391 - 110,817 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11091,782 - 110,839 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Itga7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936646160,661 - 179,454 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITGA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,126,565 - 21,148,776 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,126,565 - 21,150,875 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ITGA7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11151,634,324 - 51,656,251 (-)NCBI
Itga7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480212,303,969 - 12,332,737 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000048966   ⟹   ENSPPAP00000026133
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1233,923,549 - 33,950,886 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000048992   ⟹   ENSPPAP00000026159
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1233,927,655 - 33,950,886 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000048995   ⟹   ENSPPAP00000026162
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1233,927,655 - 33,950,883 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000048996   ⟹   ENSPPAP00000026163
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1233,927,655 - 33,950,883 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000049002   ⟹   ENSPPAP00000026169
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1233,927,877 - 33,950,403 (+)Ensembl
RefSeq Acc Id: XM_003807538   ⟹   XP_003807586
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11233,927,655 - 33,950,892 (+)NCBI
Mhudiblu_PPA_v01233,203,418 - 33,226,796 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003807539   ⟹   XP_003807587
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11233,927,655 - 33,950,892 (+)NCBI
Mhudiblu_PPA_v01233,203,417 - 33,226,796 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003807540   ⟹   XP_003807588
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11233,923,549 - 33,950,886 (+)NCBI
Mhudiblu_PPA_v01233,199,040 - 33,226,796 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008959703   ⟹   XP_008957951
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11233,927,655 - 33,950,886 (+)NCBI
Mhudiblu_PPA_v01233,203,639 - 33,226,796 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034935697   ⟹   XP_034791588
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01233,203,495 - 33,226,307 (+)NCBI
RefSeq Acc Id: XM_034935698   ⟹   XP_034791589
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01233,198,916 - 33,226,796 (+)NCBI
RefSeq Acc Id: XM_034935699   ⟹   XP_034791590
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01233,195,602 - 33,226,307 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_003807588   ⟸   XM_003807540
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_003807587   ⟸   XM_003807539
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003807586   ⟸   XM_003807538
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008957951   ⟸   XM_008959703
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034791590   ⟸   XM_034935699
- Peptide Label: isoform X6
RefSeq Acc Id: XP_034791589   ⟸   XM_034935698
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034791588   ⟸   XM_034935697
- Peptide Label: isoform X4
RefSeq Acc Id: ENSPPAP00000026169   ⟸   ENSPPAT00000049002
RefSeq Acc Id: ENSPPAP00000026133   ⟸   ENSPPAT00000048966
RefSeq Acc Id: ENSPPAP00000026162   ⟸   ENSPPAT00000048995
RefSeq Acc Id: ENSPPAP00000026163   ⟸   ENSPPAT00000048996
RefSeq Acc Id: ENSPPAP00000026159   ⟸   ENSPPAT00000048992
Protein Domains
Integrin_alpha2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036189 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000026133 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000026159 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000026162 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000026163 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000026169 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048966 UniProtKB/TrEMBL
  ENSPPAT00000048992 UniProtKB/TrEMBL
  ENSPPAT00000048995 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAT00000048996 UniProtKB/TrEMBL
  ENSPPAT00000049002 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.130 UniProtKB/TrEMBL
InterPro FG-GAP UniProtKB/TrEMBL
  Int_alpha_beta-p UniProtKB/TrEMBL
  Integrin_alpha UniProtKB/TrEMBL
  Integrin_alpha-2 UniProtKB/TrEMBL
  Integrin_alpha_C_CS UniProtKB/TrEMBL
  Integrin_alpha_N UniProtKB/TrEMBL
  Integrin_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100986603 UniProtKB/TrEMBL
NCBI Gene ITGA7 ENTREZGENE
Pfam FG-GAP UniProtKB/TrEMBL
  Integrin_alpha2 UniProtKB/TrEMBL
PRINTS INTEGRINA UniProtKB/TrEMBL
PROSITE FG_GAP UniProtKB/TrEMBL
  INTEGRIN_ALPHA UniProtKB/TrEMBL
SMART Int_alpha UniProtKB/TrEMBL
Superfamily-SCOP SSF69179 UniProtKB/TrEMBL
UniProt A0A2R9B961_PANPA UniProtKB/TrEMBL
  A0A2R9B992_PANPA UniProtKB/TrEMBL
  A0A2R9B996_PANPA UniProtKB/TrEMBL
  A0A2R9B9A5_PANPA UniProtKB/TrEMBL
  A0A2R9BAN2_PANPA UniProtKB/TrEMBL