NPNT (nephronectin) - Rat Genome Database

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Gene: NPNT (nephronectin) Pan paniscus
Analyze
Symbol: NPNT
Name: nephronectin
RGD ID: 11879757
Description: ENCODES a protein that exhibits calcium ion binding (inferred); integrin binding (inferred); INVOLVED IN branching involved in ureteric bud morphogenesis (ortholog); cell-matrix adhesion (ortholog); extracellular matrix organization (ortholog); ASSOCIATED WITH bilateral renal aplasia (ortholog); genetic disease (ortholog); FOUND IN basement membrane (inferred); collagen-containing extracellular matrix (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23103,983,290 - 104,063,450 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14104,278,633 - 104,358,634 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0498,365,727 - 98,445,746 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14108,974,971 - 109,054,671 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4108,974,971 - 109,054,671 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
NPNT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23103,983,290 - 104,063,450 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14104,278,633 - 104,358,634 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0498,365,727 - 98,445,746 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14108,974,971 - 109,054,671 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4108,974,971 - 109,054,671 (+)Ensemblpanpan1.1panPan2
NPNT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384105,895,471 - 105,971,671 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4105,894,775 - 106,004,027 (+)EnsemblGRCh38hg38GRCh38
GRCh374106,816,628 - 106,892,828 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364107,036,054 - 107,112,277 (+)NCBINCBI36Build 36hg18NCBI36
Celera4104,115,729 - 104,192,091 (+)NCBICelera
Cytogenetic Map4q24NCBI
HuRef4102,551,277 - 102,627,657 (+)NCBIHuRef
CHM1_14106,793,392 - 106,869,624 (+)NCBICHM1_1
T2T-CHM13v2.04109,206,597 - 109,282,798 (+)NCBIT2T-CHM13v2.0
Npnt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393132,587,506 - 132,656,052 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3132,587,506 - 132,656,052 (-)EnsemblGRCm39 Ensembl
GRCm383132,881,745 - 132,950,291 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3132,881,745 - 132,950,291 (-)EnsemblGRCm38mm10GRCm38
MGSCv373132,545,647 - 132,613,255 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363132,819,989 - 132,887,597 (-)NCBIMGSCv36mm8
Celera3139,306,540 - 139,374,486 (-)NCBICelera
Cytogenetic Map3G3NCBI
cM Map361.52NCBI
Npnt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82224,065,191 - 224,133,567 (-)NCBIGRCr8
mRatBN7.22221,391,151 - 221,459,527 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2221,391,153 - 221,459,401 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2229,049,550 - 229,117,766 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02226,949,232 - 227,017,459 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02221,806,890 - 221,875,109 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02238,001,767 - 238,068,886 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2238,002,990 - 238,068,694 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02256,541,460 - 256,609,626 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2213,627,605 - 213,693,773 (-)NCBICelera
Cytogenetic Map2q43NCBI
Npnt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554963,320,946 - 3,388,694 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554963,321,310 - 3,388,625 (-)NCBIChiLan1.0ChiLan1.0
NPNT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13226,706,147 - 26,781,792 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3226,705,476 - 26,781,275 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3215,244,637 - 15,320,270 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03226,938,244 - 27,013,911 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3226,938,240 - 27,013,899 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13226,934,668 - 27,010,414 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03226,679,785 - 26,755,603 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03213,106,933 - 13,182,805 (-)NCBIUU_Cfam_GSD_1.0
Npnt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530114,346,316 - 14,448,517 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368141,095,974 - 1,165,866 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368141,096,604 - 1,165,755 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPNT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8115,779,840 - 115,861,137 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18115,768,963 - 115,861,170 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28124,205,423 - 124,229,272 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NPNT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1753,924,655 - 54,001,320 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl753,924,701 - 54,001,852 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603732,544,147 - 32,621,638 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Npnt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248302,881,638 - 2,943,586 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248302,881,948 - 2,943,577 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000045186   ⟹   ENSPPAP00000022376
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl4108,974,971 - 109,054,671 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000045191   ⟹   ENSPPAP00000022381
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl4108,974,974 - 109,054,671 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000045194   ⟹   ENSPPAP00000022384
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl4108,974,982 - 109,054,671 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000045198   ⟹   ENSPPAP00000022388
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl4108,974,982 - 109,054,671 (+)Ensembl
RefSeq Acc Id: XM_003829972   ⟹   XP_003830020
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23103,983,663 - 104,063,450 (+)NCBI
NHGRI_mPanPan14104,278,645 - 104,358,634 (+)NCBI
Mhudiblu_PPA_v0498,365,733 - 98,445,746 (+)NCBI
PanPan1.14108,974,971 - 109,054,671 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003829973   ⟹   XP_003830021
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23103,983,376 - 104,063,450 (+)NCBI
NHGRI_mPanPan14104,278,640 - 104,358,634 (+)NCBI
Mhudiblu_PPA_v0498,365,732 - 98,445,746 (+)NCBI
PanPan1.14108,974,971 - 109,054,671 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003829974   ⟹   XP_003830022
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23103,983,375 - 104,063,450 (+)NCBI
NHGRI_mPanPan14104,278,639 - 104,358,634 (+)NCBI
Mhudiblu_PPA_v0498,365,731 - 98,445,746 (+)NCBI
PanPan1.14108,974,974 - 109,054,671 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003829975   ⟹   XP_003830023
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23103,983,375 - 104,063,450 (+)NCBI
NHGRI_mPanPan14104,278,637 - 104,358,634 (+)NCBI
Mhudiblu_PPA_v0498,365,730 - 98,445,746 (+)NCBI
PanPan1.14108,974,974 - 109,054,671 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003829976   ⟹   XP_003830024
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23103,983,370 - 104,063,450 (+)NCBI
NHGRI_mPanPan14104,278,635 - 104,358,634 (+)NCBI
Mhudiblu_PPA_v0498,365,728 - 98,445,746 (+)NCBI
PanPan1.14108,974,974 - 109,054,671 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008955354   ⟹   XP_008953602
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23103,983,290 - 104,063,450 (+)NCBI
NHGRI_mPanPan14104,278,635 - 104,358,634 (+)NCBI
Mhudiblu_PPA_v0498,365,728 - 98,445,746 (+)NCBI
PanPan1.14108,974,982 - 109,054,671 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008955355   ⟹   XP_008953603
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23103,983,290 - 104,063,450 (+)NCBI
NHGRI_mPanPan14104,278,633 - 104,358,634 (+)NCBI
Mhudiblu_PPA_v0498,365,727 - 98,445,746 (+)NCBI
PanPan1.14108,974,982 - 109,054,671 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063603853   ⟹   XP_063459923
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23103,983,362 - 104,063,450 (+)NCBI
RefSeq Acc Id: XM_063603854   ⟹   XP_063459924
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23103,990,887 - 104,063,450 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003830020   ⟸   XM_003829972
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_003830021   ⟸   XM_003829973
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_003830022   ⟸   XM_003829974
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_003830023   ⟸   XM_003829975
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003830024   ⟸   XM_003829976
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008953602   ⟸   XM_008955354
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008953603   ⟸   XM_008955355
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSPPAP00000022376   ⟸   ENSPPAT00000045186
RefSeq Acc Id: ENSPPAP00000022381   ⟸   ENSPPAT00000045191
RefSeq Acc Id: ENSPPAP00000022384   ⟸   ENSPPAT00000045194
RefSeq Acc Id: ENSPPAP00000022388   ⟸   ENSPPAT00000045198
RefSeq Acc Id: XP_063459923   ⟸   XM_063603853
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063459924   ⟸   XM_063603854
- Peptide Label: isoform X8
Protein Domains
EGF-like   MAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034385 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045186.1 UniProtKB/TrEMBL
  ENSPPAT00000045191.1 UniProtKB/TrEMBL
  ENSPPAT00000045194.1 UniProtKB/TrEMBL
  ENSPPAT00000045198.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  EGF_dom UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  MAM_dom UniProtKB/TrEMBL
NCBI Gene NPNT ENTREZGENE
PANTHER NEPHRONECTIN UniProtKB/TrEMBL
  PA14 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  MAM_2 UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A0A2R9AYJ2_PANPA UniProtKB/TrEMBL
  A0A2R9AZC1_PANPA UniProtKB/TrEMBL
  A0A2R9B4L9_PANPA UniProtKB/TrEMBL
  A0A2R9B4M3_PANPA UniProtKB/TrEMBL