CSF1 (colony stimulating factor 1) - Rat Genome Database

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Gene: CSF1 (colony stimulating factor 1) Pan paniscus
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Symbol: CSF1
Name: colony stimulating factor 1
RGD ID: 11941382
Description: ENCODES a protein that exhibits cytokine activity (ortholog); growth factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN branching involved in mammary gland duct morphogenesis (ortholog); cell population proliferation (ortholog); developmental process involved in reproduction (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); Albuminuria (ortholog); amyloidosis (ortholog); FOUND IN CSF1-CSF1R complex (ortholog); extracellular space (ortholog); nuclear body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: macrophage colony-stimulating factor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11127,764,916 - 127,864,188 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1127,764,916 - 127,781,943 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01112,555,755 - 112,575,894 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
branching involved in mammary gland duct morphogenesis  (ISO)
cell population proliferation  (ISO)
developmental process involved in reproduction  (ISO)
homeostasis of number of cells within a tissue  (ISO)
macrophage colony-stimulating factor signaling pathway  (ISO)
macrophage differentiation  (ISO)
mammary duct terminal end bud growth  (ISO)
mammary gland fat development  (ISO)
microglial cell proliferation  (ISO)
negative regulation of neuron death  (ISO)
odontogenesis  (ISO)
ossification  (ISO)
osteoclast differentiation  (ISO)
osteoclast proliferation  (ISO)
positive regulation of cell migration  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of cell-matrix adhesion  (ISO)
positive regulation of cellular protein metabolic process  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of macrophage chemotaxis  (ISO)
positive regulation of macrophage colony-stimulating factor signaling pathway  (ISO)
positive regulation of macrophage derived foam cell differentiation  (ISO)
positive regulation of macrophage differentiation  (ISO)
positive regulation of macrophage migration  (ISO)
positive regulation of microglial cell migration  (ISO)
positive regulation of monocyte differentiation  (ISO)
positive regulation of mononuclear cell proliferation  (ISO)
positive regulation of multicellular organism growth  (ISO)
positive regulation of odontogenesis of dentin-containing tooth  (ISO)
positive regulation of osteoclast differentiation  (ISO)
positive regulation of protein kinase activity  (ISO)
positive regulation of Ras protein signal transduction  (ISO)
regulation of ossification  (ISO)
response to ischemia  (ISO)
transmembrane receptor protein tyrosine kinase signaling pathway  (ISO)

Cellular Component

References

Genomics

Comparative Map Data
CSF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11127,764,916 - 127,864,188 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1127,764,916 - 127,781,943 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01112,555,755 - 112,575,894 (+)NCBIMhudiblu_PPA_v0panPan3
CSF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1109,910,242 - 109,930,992 (+)EnsemblGRCh38hg38GRCh38
GRCh381109,910,506 - 109,930,992 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371110,453,471 - 110,473,614 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361110,254,980 - 110,273,878 (+)NCBINCBI36hg18NCBI36
Build 341110,165,498 - 110,184,397NCBI
Celera1108,699,836 - 108,719,046 (+)NCBI
Cytogenetic Map1p13.3NCBI
HuRef1108,322,980 - 108,343,084 (+)NCBIHuRef
CHM1_11110,568,036 - 110,588,399 (+)NCBICHM1_1
Csf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393107,648,364 - 107,668,048 (-)NCBIGRCm39mm39
GRCm39 Ensembl3107,648,364 - 107,667,785 (-)Ensembl
GRCm383107,741,048 - 107,760,469 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3107,741,048 - 107,760,469 (-)EnsemblGRCm38mm10GRCm38
MGSCv373107,543,966 - 107,563,387 (-)NCBIGRCm37mm9NCBIm37
MGSCv363107,869,116 - 107,888,525 (-)NCBImm8
Celera3110,073,392 - 110,092,813 (-)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.83NCBI
Csf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22195,377,215 - 195,396,608 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2195,377,215 - 195,411,704 (-)Ensembl
Rnor_6.02210,522,370 - 210,550,546 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2210,522,375 - 210,550,560 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02229,989,430 - 230,017,945 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42203,292,765 - 203,307,968 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12203,255,518 - 203,270,701 (-)NCBI
Celera2188,024,644 - 188,043,645 (-)NCBICelera
Cytogenetic Map2q34NCBI
Csf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543513,404,508 - 13,424,247 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543513,404,236 - 13,423,059 (+)NCBIChiLan1.0ChiLan1.0
CSF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1642,028,454 - 42,047,028 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl642,034,149 - 42,049,371 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha644,804,295 - 44,823,439 (-)NCBI
ROS_Cfam_1.0642,360,013 - 42,379,162 (-)NCBI
UMICH_Zoey_3.1642,092,785 - 42,111,910 (-)NCBI
UNSW_CanFamBas_1.0642,050,361 - 42,070,486 (-)NCBI
UU_Cfam_GSD_1.0642,485,555 - 42,505,704 (-)NCBI
Csf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505818,720,989 - 18,742,009 (-)NCBI
SpeTri2.0NW_0049367041,372,137 - 1,393,355 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4110,178,478 - 110,197,901 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14110,178,466 - 110,198,232 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24120,592,959 - 120,605,764 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12023,615,107 - 23,635,399 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603834,824,127 - 34,844,440 (+)NCBIVero_WHO_p1.0
Csf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247725,663,374 - 5,705,965 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000063124   ⟹   ENSPPAP00000040209
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1127,764,916 - 127,781,653 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000063129   ⟹   ENSPPAP00000040214
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1127,770,717 - 127,781,943 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000063135   ⟹   ENSPPAP00000040220
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1127,770,730 - 127,781,707 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000063140   ⟹   ENSPPAP00000040225
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1127,770,730 - 127,781,650 (-)Ensembl
RefSeq Acc Id: XM_034933157   ⟹   XP_034789048
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01112,555,755 - 112,575,894 (+)NCBI
RefSeq Acc Id: XM_034933162   ⟹   XP_034789053
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01112,555,763 - 112,571,828 (+)NCBI
RefSeq Acc Id: XM_034933164   ⟹   XP_034789055
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01112,555,769 - 112,575,894 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034789048 (Get FASTA)   NCBI Sequence Viewer  
  XP_034789053 (Get FASTA)   NCBI Sequence Viewer  
  XP_034789055 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034789048   ⟸   XM_034933157
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034789053   ⟸   XM_034933162
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034789055   ⟸   XM_034933164
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000040214   ⟸   ENSPPAT00000063129
RefSeq Acc Id: ENSPPAP00000040209   ⟸   ENSPPAT00000063124
RefSeq Acc Id: ENSPPAP00000040225   ⟸   ENSPPAT00000063140
RefSeq Acc Id: ENSPPAP00000040220   ⟸   ENSPPAT00000063135


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042763 Ensembl, ENTREZGENE
NCBI Gene CSF1 ENTREZGENE