CORO1C (coronin 1C) - Rat Genome Database
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Gene: CORO1C (coronin 1C) Pan paniscus
Analyze
Symbol: CORO1C
Name: coronin 1C
RGD ID: 11953369
Description: ENCODES a protein that exhibits actin filament binding (ortholog); small GTPase binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); endosomal transport (ortholog); endosome fission (ortholog); ASSOCIATED WITH IgA glomerulonephritis (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoskeleton (ortholog); endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: coronin-1C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112109,617,087 - 109,702,129 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12109,617,093 - 109,674,368 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012106,220,755 - 106,306,098 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
CORO1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112109,617,087 - 109,702,129 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12109,617,093 - 109,674,368 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012106,220,755 - 106,306,098 (-)NCBIMhudiblu_PPA_v0panPan3
CORO1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12108,645,109 - 108,731,596 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl12108,645,109 - 108,731,526 (-)EnsemblGRCh38hg38GRCh38
GRCh3812108,645,109 - 108,759,955 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712109,038,885 - 109,125,294 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612107,563,014 - 107,649,424 (-)NCBINCBI36hg18NCBI36
Build 3412107,541,354 - 107,627,761NCBI
Celera12108,708,285 - 108,794,696 (-)NCBI
Cytogenetic Map12q24.11NCBI
HuRef12106,103,254 - 106,190,451 (-)NCBIHuRef
CHM1_112109,005,617 - 109,092,972 (-)NCBICHM1_1
Coro1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395113,980,500 - 114,046,767 (-)NCBIGRCm39mm39
GRCm39 Ensembl5113,980,497 - 114,046,819 (-)Ensembl
GRCm385113,842,439 - 113,908,706 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5113,842,436 - 113,908,758 (-)EnsemblGRCm38mm10GRCm38
MGSCv375114,292,448 - 114,358,715 (-)NCBIGRCm37mm9NCBIm37
MGSCv365114,103,438 - 114,169,705 (-)NCBImm8
Celera5110,944,005 - 111,011,106 (-)NCBICelera
Cytogenetic Map5FNCBI
Coro1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21242,712,960 - 42,785,179 (+)NCBI
Rnor_6.0 Ensembl1248,481,750 - 48,554,052 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01248,481,741 - 48,554,054 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01250,264,710 - 50,337,014 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,747,188 - 43,819,356 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1244,343,663 - 44,386,096 (+)NCBICelera
Cytogenetic Map12q16NCBI
Coro1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554559,901,702 - 9,953,098 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554559,905,243 - 9,952,504 (-)NCBIChiLan1.0ChiLan1.0
CORO1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2618,176,441 - 18,236,652 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12618,161,707 - 18,236,654 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Coro1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936769555,719 - 637,420 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CORO1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1442,062,893 - 42,145,125 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11442,062,468 - 42,145,130 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21444,605,492 - 44,688,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CORO1C
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111103,846,783 - 103,933,283 (-)NCBI
ChlSab1.1 Ensembl11103,845,292 - 103,999,993 (-)Ensembl
Coro1c
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474711,879,315 - 11,967,496 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000041988   ⟹   ENSPPAP00000019233
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl12109,617,093 - 109,673,514 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000041995   ⟹   ENSPPAP00000019239
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl12109,619,372 - 109,674,368 (-)Ensembl
RefSeq Acc Id: XM_003832518   ⟹   XP_003832566
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.112109,617,087 - 109,702,129 (-)NCBI
Mhudiblu_PPA_v012106,220,755 - 106,306,098 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003832519   ⟹   XP_003832567
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.112109,617,087 - 109,673,514 (-)NCBI
Mhudiblu_PPA_v012106,220,755 - 106,277,502 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034934413   ⟹   XP_034790304
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v012106,220,755 - 106,305,743 (-)NCBI
RefSeq Acc Id: XM_034934415   ⟹   XP_034790306
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v012106,220,755 - 106,304,690 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003832566 (Get FASTA)   NCBI Sequence Viewer  
  XP_003832567 (Get FASTA)   NCBI Sequence Viewer  
  XP_034790304 (Get FASTA)   NCBI Sequence Viewer  
  XP_034790306 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003832566   ⟸   XM_003832518
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003832567   ⟸   XM_003832519
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034790304   ⟸   XM_034934413
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034790306   ⟸   XM_034934415
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000019233   ⟸   ENSPPAT00000041988
RefSeq Acc Id: ENSPPAP00000019239   ⟸   ENSPPAT00000041995
Protein Domains
WD_REPEATS_REGION


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032787 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000019233 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000019239 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041988 UniProtKB/TrEMBL
  ENSPPAT00000041995 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro CORO1C UniProtKB/TrEMBL
  Coronin UniProtKB/TrEMBL
  DUF1899 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene CORO1C ENTREZGENE
PANTHER PTHR10856 UniProtKB/TrEMBL
  PTHR10856:SF10 UniProtKB/TrEMBL
Pfam DUF1899 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART DUF1899 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A2R9APZ3_PANPA UniProtKB/TrEMBL
  A0A2R9AW85_PANPA UniProtKB/TrEMBL