CORO1C (coronin 1C) - Rat Genome Database

Name: CORO1C
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: CORO1C (coronin 1C) Pan paniscus

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Symbol:

CORO1C

Name:

coronin 1C

RGD ID:

11953369

Description:

ENCODES a protein that exhibits actin filament binding (inferred); small GTPase binding (inferred); INVOLVED IN activation of GTPase activity (ortholog); corpus callosum development (ortholog); negative regulation of protein kinase activity by regulation of protein phosphorylation (ortholog); ASSOCIATED WITH IgA glomerulonephritis (ortholog); lung non-small cell carcinoma (ortholog); proliferative diabetic retinopathy (ortholog); FOUND IN focal adhesion (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coronin-1C

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CORO1C (coronin 1C)	NCBI	Ortholog
Mus musculus (house mouse):	Coro1c (coronin, actin binding protein 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Coro1c (coronin 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Coro1c (coronin 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CORO1C (coronin 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Coro1c (coronin 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CORO1C (coronin 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CORO1C (coronin 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Coro1c (coronin 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	116,709,930 - 116,795,288 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	116,706,328 - 116,791,686 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	106,220,755 - 106,306,098 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	109,617,087 - 109,702,129 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	109,617,093 - 109,674,368 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

IgA glomerulonephritis (ISO)

lung non-small cell carcinoma (ISO)

proliferative diabetic retinopathy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament organization (IEA)

activation of GTPase activity (ISO)

corpus callosum development (IEA,ISO)

endosomal transport (IEA)

endosome fission (IEA)

endosome membrane tubulation (IEA)

establishment of protein localization (IEA)

membrane fission (IEA)

negative regulation of epithelial cell migration (IEA)

negative regulation of focal adhesion assembly (IEA)

negative regulation of protein kinase activity by regulation of protein phosphorylation (ISO)

negative regulation of protein phosphorylation (ISO)

negative regulation of substrate adhesion-dependent cell spreading (IEA)

neural crest cell migration (IEA)

positive regulation of lamellipodium morphogenesis (IEA)

regulation of epithelial cell migration (IEA)

regulation of fibroblast migration (IEA)

regulation of focal adhesion assembly (IEA)

regulation of protein phosphorylation (ISO)

regulation of ruffle assembly (IEA)

regulation of smooth muscle cell chemotaxis (ISO)

regulation of substrate adhesion-dependent cell spreading (IEA)

ventricular system development (IEA,ISO)

Cellular Component

actin cytoskeleton (IEA)

cytoskeleton (IEA)

endosome membrane (IEA)

flotillin complex (IEA)

focal adhesion (ISO)

lamellipodium (IEA)

lateral plasma membrane (IEA)

vesicle (IEA)

Molecular Function

actin filament binding (IEA)

protein binding (ISO)

small GTPase binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CORO1C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	116,709,930 - 116,795,288 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	116,706,328 - 116,791,686 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	106,220,755 - 106,306,098 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	109,617,087 - 109,702,129 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	109,617,093 - 109,674,368 (-)	Ensembl	panpan1.1		panPan2

CORO1C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	108,645,109 - 108,731,518 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	108,645,109 - 108,731,526 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	109,038,885 - 109,125,294 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	107,563,014 - 107,649,424 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	107,541,354 - 107,627,761	NCBI
Celera	12	108,708,285 - 108,794,696 (-)	NCBI		Celera
Cytogenetic Map	12	q24.11	NCBI
HuRef	12	106,103,254 - 106,190,451 (-)	NCBI		HuRef
CHM1_1	12	109,005,617 - 109,092,972 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	108,619,700 - 108,706,142 (-)	NCBI		T2T-CHM13v2.0

Coro1c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	113,980,500 - 114,046,767 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	113,980,497 - 114,046,819 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	113,842,439 - 113,908,706 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	113,842,436 - 113,908,758 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	114,292,448 - 114,358,715 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	114,103,438 - 114,169,705 (-)	NCBI		MGSCv36	mm8
Celera	5	110,944,005 - 111,011,106 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	55.64	NCBI

Coro1c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	48,373,573 - 48,445,718 (+)	NCBI		GRCr8
mRatBN7.2	12	42,713,024 - 42,785,179 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	42,712,991 - 42,785,179 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	43,907,113 - 43,949,533 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	44,520,715 - 44,563,133 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	43,581,242 - 43,623,661 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	48,481,741 - 48,554,054 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	48,481,750 - 48,554,052 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	50,264,710 - 50,337,014 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	43,747,188 - 43,819,356 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	44,343,663 - 44,386,096 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

Coro1c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	9,901,702 - 9,953,098 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	9,905,243 - 9,952,504 (-)	NCBI	ChiLan1.0	ChiLan1.0

CORO1C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	18,161,707 - 18,236,654 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	18,176,441 - 18,236,652 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	17,565,220 - 17,640,232 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	18,505,707 - 18,580,881 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	18,505,739 - 18,582,355 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	17,774,249 - 17,849,531 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	18,496,473 - 18,573,357 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	18,515,317 - 18,590,632 (+)	NCBI		UU_Cfam_GSD_1.0

Coro1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	144,838,455 - 144,922,226 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936769	553,642 - 637,008 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936769	555,719 - 637,420 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CORO1C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	42,062,893 - 42,145,123 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	42,062,468 - 42,145,130 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	44,605,492 - 44,688,485 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CORO1C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	103,846,783 - 103,933,283 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	103,845,292 - 103,999,993 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	141,165,870 - 141,272,991 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Coro1c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	11,879,215 - 11,963,250 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	11,879,315 - 11,967,496 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003832518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003832519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034934413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034934415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057299520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063593626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000041988 ⟹ ENSPPAP00000019233

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	12	109,617,093 - 109,673,514 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000041995 ⟹ ENSPPAP00000019239

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	12	109,619,372 - 109,674,368 (-)	Ensembl

RefSeq Acc Id:

XM_003832518 ⟹ XP_003832566

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	116,709,930 - 116,795,288 (-)	NCBI
NHGRI_mPanPan1	12	116,706,328 - 116,791,686 (-)	NCBI
Mhudiblu_PPA_v0	12	106,220,755 - 106,306,098 (-)	NCBI
PanPan1.1	12	109,617,087 - 109,702,129 (-)	NCBI

Sequence:

show sequence

GCGGGGCCTACGCGCGGTGGCGGGGGCGGTGGCGGCTGCCCGCGCCCCTCCCCCGCACGGCGCT
CAGTGCCAGGCGGGAGGCGGCAGCGGTTGGAGGCTTCGCCCGGCTTTGCAGCGGGGACTTCGGC
GGCGGCGCCTCAGGCACCTCGGCCCGGACACGATGAGGCGAGTGGTACGACAGAGCAAGTTTCG
GCATGTATTTGGGCAAGCGGTGAAAAATGACCAGTGCTATGATGACATCCGGGTTTCTCGTGTG
ACCTGGGATAGTTCCTTTTGTGCTGTCAATCCCAGATTTGTTGCCATAATCATAGAGGCAAGTG
GGGGAGGAGCGTTCCTTGTCCTCCCTCTGCACAAGACTGGTCGAATTGACAAATCTTACCCTAC
AGTATGTGGCCACACAGGACCAGTGCTGGACATAGACTGGTGCCCACATAACGATCAGGTCATT
GCCAGTGGTTCAGAGGACTGCACGGTCATGGTATGGCAGATCCCAGAAAATGGACTCACCCTTT
CCCTGACTGAACCTGTGGTGATTTTGGAAGGCCACTCAAAGAGAGTCGGCATCGTGGCTTGGCA
TCCAACAGCCCGCAATGTGCTTCTTAGCGCAGGTTGTGATAATGCCATTATCATCTGGAATGTG
GGAACAGGGGAAGCCCTTATAAACTTGGACGATATGCATTCAGACATGATTTACAATGTGAGCT
GGAACCGGAATGGCAGTCTGATCTGCACAGCTTCCAAAGACAAGAAAGTGAGAGTCATTGATCC
CAGGAAACAAGAGATTGTTGCTGAGAAGGAGAAAGCACATGAAGGAGCAAGACCCATGAGAGCC
ATCTTCCTGGCCGATGGCAATGTCTTCACCACTGGGTTCAGCCGCATGAGCGAGCGGCAGCTGG
CTCTCTGGAATCCGAAAAATATGCAGGAACCAATTGCTCTTCATGAGATGGACACTAGCAATGG
GGTGTTGCTGCCTTTCTATGACCCTGACACCAGCATCATTTACTTATGTGGAAAGGGTGACAGC
AGTATTCGCTATTTTGAGATCACGGATGAATCCCCGTACGTCCACTACCTCAACACGTTCAGCA
GCAAGGAGCCTCAGAGAGGGATGGGTTACATGCCCAAGAGGGGACTTGATGTTAACAAATGTGA
GATTGCCAGATTCTTCAAACTTCATGAGAGAAAGTGTGAACCTATTATTATGACTGTTCCCAGG
AAGTCTGACCTTTTCCAAGATGACCTGTATCCTGACACAGCGGGGCCAGAGGCCGCGCTGGAGG
CAGAAGAGTGGTTCGAAGGCAAGAATGCAGACCCAATCCTCATCTCCTTGAAGCACGGGTACAT
TCCAGGCAAAAACAGGGATCTCAAGGTGGTCAAGAAGAACATTCTGGATAGCAAGCCCACTGCA
AACAAGAAGTGTGACCTGATCAGCGTCCCCAAGAAAACCACAGACACGGCCAGTGTGCAAAATG
AAGCCAAGTTGGATGAGATTTTAAAAGAGATCAAATCTATAAAAGACACAATCTGCAATCAAGA
TGAGCGTATTTCCAAGTTAGAACAGCAGATGGCAAAGATAGCAGCCTGAAGGTCCCACCCCCAC
CCCTACAGAAAAAATGGGAGCAAGAACTTGTGCTTGGGAGCTGGTTGTTGGTGTGGTCCTAGGG
AGGGCGGAAAGGGAGGCACTGCCATTTGGAGACATTCCATTTCAGATTTGTCAACCAGCGATAG
GCCACATTCCAGTAAGAACTCAATTTGTCTCCCAAATTTGCAGAAACAAAACGTGATTTAAAAG
CTGAGCTTTTTATCAGAAAGCTTTTTTGATGTTTTAAGTGTTATGTGACTTGTTGAACTTTTTA
AAAAGTGCTACTTTTAAAATCCCAGATACTCTGAATTTTAGAAAACAAACTAATTCTGATTGTG
TCGTGCCCAAGTACCCTTTTTTTTAATGAATAGGGACCAATGCCACATTACTTTTTATATTTCT
TTCTTTTTTAATGTTGCCAAAACCAAAAGTAGCTTTGTTTTCCTTTGTATTTTGCTACTTTGCA
GTATTTGTGTGTGGTTTTTTTTTTCCTTAATTTGAAAGGGACAGCACTGTGTATGTTTATAAAC
TAAATGAAGATAAGATATTATTTTGTATAAACATTCATCTGAGAACAATCAAAGCAGTAGCCAC
ATGGTGCTGGCTCCTTTGCAGCACAAACCTGGTCATTTTGATGACTGTACAACAGGAAGACTTG
AAAAATCACGTGGATTCATATTACCACCGCTCTCATTTCATGGAGTCTTCTGATCAAAAAAGCT
CACGTCGTATTTCTTCCTTTCCTTTCTCTTTTCTAGAAATTGGGTGTTTGTACCAGAATGGAAT
TTTGCTTCTCGGTTATCCTGTGCTTCAGATGATTATAATCTAACCCAAACTAGCATGTGTTTCT
GCAGTTTGTTACACACCTAGGATCATATTGCATTCATCACTTTAAACATCGTGTTTCAGGTTTT
GGTCAATACTTGACAAGGGTGCCCAGGACAGGAAGACGTGTACTGCTGAGTGTTCCTTCTTGCC
CTTTTCAGCAGCTTGCCCAGCTCTTGAGTACAGTGGTGGGGACTAAAAATGTGGGCATGTGGAG
AGGGGTATTTGCCCTGGGTGATCCTGTTTCCCTGTGCTGTCCCCATGCTGTGTTGGAGGAGGAA
GTGGCTCTCCTTCCACCAACAAAGCTCCTGCTCTACCCTCTTCCTCACATGTGCTGCGACCTCT
CTCAGGGCTCCCCCAGCCATTCCTTCTTTCCTTCCTGCCTTTTAGCTCTAACCACATTAAGCTA
AGACAAGGCCAGAGGGTGCGATTAAATGAGTATTGAGACTGAGGAGAATGATAGAGAGTGAAGC
AGAAACAGGAGCGCAGACCTCTGCTGTAGCTTTAATGCATACAAACATGTCCCTCCGCACAACT
AACCTGCCCTGCCTCTCCATCTCGCACCAAGGCTGCGTCAAAGCACAGAGGCTCCCCGGACTCG
GAGGGGGCCAGAGACTGAGCTCTGGTCGCCTGTTCATTCCTCGGTTAGCTGGAACTTTGCCCCA
TTTCCAGTTTCTTATAGTGCATGCTTGGGAAACAAGATTTAAGGAGCCTCTGTTTTGGAAGGGC
TGTCTGTGATTGAACGTGAAATGTGTAGTGCCATTGGGACCACGAAGGGAATTCTTGCACATGC
TCGTGCTGGTGTGGGCATGGGAGTGGCTGGAAACGTCTGTATGCAGGGAGCCAGGGTGAGGGCA
GAGTGTGGTGACAGCCGAACTTGGAGTAATGTCCGTGTAGAAAAAGGACCATGTTCTTATCCAG
CCAATACTGGGAGTGCTGTCTCCACAATTTCAGGGCATCTGAATGTTTGATGTGGTTTTGTGTG
TGTGTGTGTGTGTTTAATATTGAAGTGGATCATGAGATGTAAAGAAAACAATAATGGCAATGAC
TTATATTCAAATCTGTATTTGTTTCTTTATCAATGTAATCTGCTGAGGACCTTTTGTCTAAGAT
TCAGAAGTGTTTTAAGGTTCTGATATCGAATTAATGAAGTAAAGTTGTTGATGGTGGTGAAACA
CCGTAGGGCATGTGGTTCAAAGAGAAGCAGGAGGGCAAGGGAAAGTTACCCTGGTCTTAGTTTG
TAGCTTATGACTTATTTAATGAATGGATGCCCAGCCAAGCTCAGAGTAGGTGCCCAAAGCATTG
TGGATTATTTTCCTGTTTTGTCTTTTTTTTTTTTTTAAGCCGTGACATCCCAGAAGAGGACAGT
GAATTACTCCTAGGTCGGCTCTTATAGAGTGGCCATAGTGTTCTGTCAAAACACTTGCTTCCAT
TTTCAGAGATAAAAATCATTGATTACAAAA

hide sequence

RefSeq Acc Id:

XM_003832519 ⟹ XP_003832567

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	116,709,930 - 116,769,310 (-)	NCBI
NHGRI_mPanPan1	12	116,706,328 - 116,763,209 (-)	NCBI
Mhudiblu_PPA_v0	12	106,220,755 - 106,277,502 (-)	NCBI
PanPan1.1	12	109,617,087 - 109,673,514 (-)	NCBI

Sequence:

show sequence

CTTTTCACCACCTCATGGAAGCTGTCTTATCTAACTCACGCTTGAGAAGTATTCATATTGATTC
CAAAATGAAGGACCCTGGCCACGAATCATTTGCCATCTCCTCTACCAAAGACTCAAAATGTATG
GCCCTGGTAGTCAGCTGGGAAAGTCTGGCAATAACAGCTGGGCTAAGGAACGTGGATGCTCAAT
TGCCTGCCAAGGGTCTCTTACTTCAGCCCGGCTACATGCTCCCAGCATTGGAGAGAGGCCACTT
TCACACATGCCTTGGAAGGACACGATGAGGCGAGTGGTACGACAGAGCAAGTTTCGGCATGTAT
TTGGGCAAGCGGTGAAAAATGACCAGTGCTATGATGACATCCGGGTTTCTCGTGTGACCTGGGA
TAGTTCCTTTTGTGCTGTCAATCCCAGATTTGTTGCCATAATCATAGAGGCAAGTGGGGGAGGA
GCGTTCCTTGTCCTCCCTCTGCACAAGACTGGTCGAATTGACAAATCTTACCCTACAGTATGTG
GCCACACAGGACCAGTGCTGGACATAGACTGGTGCCCACATAACGATCAGGTCATTGCCAGTGG
TTCAGAGGACTGCACGGTCATGGTATGGCAGATCCCAGAAAATGGACTCACCCTTTCCCTGACT
GAACCTGTGGTGATTTTGGAAGGCCACTCAAAGAGAGTCGGCATCGTGGCTTGGCATCCAACAG
CCCGCAATGTGCTTCTTAGCGCAGGTTGTGATAATGCCATTATCATCTGGAATGTGGGAACAGG
GGAAGCCCTTATAAACTTGGACGATATGCATTCAGACATGATTTACAATGTGAGCTGGAACCGG
AATGGCAGTCTGATCTGCACAGCTTCCAAAGACAAGAAAGTGAGAGTCATTGATCCCAGGAAAC
AAGAGATTGTTGCTGAGAAGGAGAAAGCACATGAAGGAGCAAGACCCATGAGAGCCATCTTCCT
GGCCGATGGCAATGTCTTCACCACTGGGTTCAGCCGCATGAGCGAGCGGCAGCTGGCTCTCTGG
AATCCGAAAAATATGCAGGAACCAATTGCTCTTCATGAGATGGACACTAGCAATGGGGTGTTGC
TGCCTTTCTATGACCCTGACACCAGCATCATTTACTTATGTGGAAAGGGTGACAGCAGTATTCG
CTATTTTGAGATCACGGATGAATCCCCGTACGTCCACTACCTCAACACGTTCAGCAGCAAGGAG
CCTCAGAGAGGGATGGGTTACATGCCCAAGAGGGGACTTGATGTTAACAAATGTGAGATTGCCA
GATTCTTCAAACTTCATGAGAGAAAGTGTGAACCTATTATTATGACTGTTCCCAGGAAGTCTGA
CCTTTTCCAAGATGACCTGTATCCTGACACAGCGGGGCCAGAGGCCGCGCTGGAGGCAGAAGAG
TGGTTCGAAGGCAAGAATGCAGACCCAATCCTCATCTCCTTGAAGCACGGGTACATTCCAGGCA
AAAACAGGGATCTCAAGGTGGTCAAGAAGAACATTCTGGATAGCAAGCCCACTGCAAACAAGAA
GTGTGACCTGATCAGCGTCCCCAAGAAAACCACAGACACGGCCAGTGTGCAAAATGAAGCCAAG
TTGGATGAGATTTTAAAAGAGATCAAATCTATAAAAGACACAATCTGCAATCAAGATGAGCGTA
TTTCCAAGTTAGAACAGCAGATGGCAAAGATAGCAGCCTGAAGGTCCCACCCCCACCCCTACAG
AAAAAATGGGAGCAAGAACTTGTGCTTGGGAGCTGGTTGTTGGTGTGGTCCTAGGGAGGGCGGA
AAGGGAGGCACTGCCATTTGGAGACATTCCATTTCAGATTTGTCAACCAGCGATAGGCCACATT
CCAGTAAGAACTCAATTTGTCTCCCAAATTTGCAGAAACAAAACGTGATTTAAAAGCTGAGCTT
TTTATCAGAAAGCTTTTTTGATGTTTTAAGTGTTATGTGACTTGTTGAACTTTTTAAAAAGTGC
TACTTTTAAAATCCCAGATACTCTGAATTTTAGAAAACAAACTAATTCTGATTGTGTCGTGCCC
AAGTACCCTTTTTTTTAATGAATAGGGACCAATGCCACATTACTTTTTATATTTCTTTCTTTTT
TAATGTTGCCAAAACCAAAAGTAGCTTTGTTTTCCTTTGTATTTTGCTACTTTGCAGTATTTGT
GTGTGGTTTTTTTTTTCCTTAATTTGAAAGGGACAGCACTGTGTATGTTTATAAACTAAATGAA
GATAAGATATTATTTTGTATAAACATTCATCTGAGAACAATCAAAGCAGTAGCCACATGGTGCT
GGCTCCTTTGCAGCACAAACCTGGTCATTTTGATGACTGTACAACAGGAAGACTTGAAAAATCA
CGTGGATTCATATTACCACCGCTCTCATTTCATGGAGTCTTCTGATCAAAAAAGCTCACGTCGT
ATTTCTTCCTTTCCTTTCTCTTTTCTAGAAATTGGGTGTTTGTACCAGAATGGAATTTTGCTTC
TCGGTTATCCTGTGCTTCAGATGATTATAATCTAACCCAAACTAGCATGTGTTTCTGCAGTTTG
TTACACACCTAGGATCATATTGCATTCATCACTTTAAACATCGTGTTTCAGGTTTTGGTCAATA
CTTGACAAGGGTGCCCAGGACAGGAAGACGTGTACTGCTGAGTGTTCCTTCTTGCCCTTTTCAG
CAGCTTGCCCAGCTCTTGAGTACAGTGGTGGGGACTAAAAATGTGGGCATGTGGAGAGGGGTAT
TTGCCCTGGGTGATCCTGTTTCCCTGTGCTGTCCCCATGCTGTGTTGGAGGAGGAAGTGGCTCT
CCTTCCACCAACAAAGCTCCTGCTCTACCCTCTTCCTCACATGTGCTGCGACCTCTCTCAGGGC
TCCCCCAGCCATTCCTTCTTTCCTTCCTGCCTTTTAGCTCTAACCACATTAAGCTAAGACAAGG
CCAGAGGGTGCGATTAAATGAGTATTGAGACTGAGGAGAATGATAGAGAGTGAAGCAGAAACAG
GAGCGCAGACCTCTGCTGTAGCTTTAATGCATACAAACATGTCCCTCCGCACAACTAACCTGCC
CTGCCTCTCCATCTCGCACCAAGGCTGCGTCAAAGCACAGAGGCTCCCCGGACTCGGAGGGGGC
CAGAGACTGAGCTCTGGTCGCCTGTTCATTCCTCGGTTAGCTGGAACTTTGCCCCATTTCCAGT
TTCTTATAGTGCATGCTTGGGAAACAAGATTTAAGGAGCCTCTGTTTTGGAAGGGCTGTCTGTG
ATTGAACGTGAAATGTGTAGTGCCATTGGGACCACGAAGGGAATTCTTGCACATGCTCGTGCTG
GTGTGGGCATGGGAGTGGCTGGAAACGTCTGTATGCAGGGAGCCAGGGTGAGGGCAGAGTGTGG
TGACAGCCGAACTTGGAGTAATGTCCGTGTAGAAAAAGGACCATGTTCTTATCCAGCCAATACT
GGGAGTGCTGTCTCCACAATTTCAGGGCATCTGAATGTTTGATGTGGTTTTGTGTGTGTGTGTG
TGTGTTTAATATTGAAGTGGATCATGAGATGTAAAGAAAACAATAATGGCAATGACTTATATTC
AAATCTGTATTTGTTTCTTTATCAATGTAATCTGCTGAGGACCTTTTGTCTAAGATTCAGAAGT
GTTTTAAGGTTCTGATATCGAATTAATGAAGTAAAGTTGTTGATGGTGGTGAAACACCGTAGGG
CATGTGGTTCAAAGAGAAGCAGGAGGGCAAGGGAAAGTTACCCTGGTCTTAGTTTGTAGCTTAT
GACTTATTTAATGAATGGATGCCCAGCCAAGCTCAGAGTAGGTGCCCAAAGCATTGTGGATTAT
TTTCCTGTTTTGTCTTTTTTTTTTTTTTAAGCCGTGACATCCCAGAAGAGGACAGTGAATTACT
CCTAGGTCGGCTCTTATAGAGTGGCCATAGTGTTCTGTCAAAACACTTGCTTCCATTTTCAGAG
ATAAAAATCATTGATTACAAAA

hide sequence

RefSeq Acc Id:

XM_034934413 ⟹ XP_034790304

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	116,709,930 - 116,794,935 (-)	NCBI
NHGRI_mPanPan1	12	116,706,328 - 116,791,334 (-)	NCBI
Mhudiblu_PPA_v0	12	106,220,755 - 106,305,743 (-)	NCBI

RefSeq Acc Id:

XM_057299520 ⟹ XP_057155503

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	116,709,930 - 116,793,864 (-)	NCBI
NHGRI_mPanPan1	12	116,706,328 - 116,790,262 (-)	NCBI

RefSeq Acc Id:

XM_063593626 ⟹ XP_063449696

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	116,709,930 - 116,795,228 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003832566	(Get FASTA)	NCBI Sequence Viewer
	XP_003832567	(Get FASTA)	NCBI Sequence Viewer
	XP_034790304	(Get FASTA)	NCBI Sequence Viewer
	XP_057155503	(Get FASTA)	NCBI Sequence Viewer
	XP_063449696	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000019233
	ENSPPAP00000019233.1
	ENSPPAP00000019239
	ENSPPAP00000019239.1

RefSeq Acc Id:	XP_003832566 ⟸ XM_003832518
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AW85 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRRVVRQSKFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLH KTGRIDKSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEG HSKRVGIVAWHPTARNVLLSAGCDNAIIIWNVGTGEALINLDDMHSDMIYNVSWNRNGSLICTA SKDKKVRVIDPRKQEIVAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLALWNPKNMQEP IALHEMDTSNGVLLPFYDPDTSIIYLCGKGDSSIRYFEITDESPYVHYLNTFSSKEPQRGMGYM PKRGLDVNKCEIARFFKLHERKCEPIIMTVPRKSDLFQDDLYPDTAGPEAALEAEEWFEGKNAD PILISLKHGYIPGKNRDLKVVKKNILDSKPTANKKCDLISVPKKTTDTASVQNEAKLDEILKEI KSIKDTICNQDERISKLEQQMAKIAA hide sequence

RefSeq Acc Id:	XP_003832567 ⟸ XM_003832519
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9APZ3 (UniProtKB/TrEMBL), A0A2R9AW85 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYGPGSQLGKSGNNSWAKERGCSIACQGSLTSARLHAPSIGERPLSHMPWKDTMRRVVRQSKFR HVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTGRIDKSYPT VCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEGHSKRVGIVAWH PTARNVLLSAGCDNAIIIWNVGTGEALINLDDMHSDMIYNVSWNRNGSLICTASKDKKVRVIDP RKQEIVAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLALWNPKNMQEPIALHEMDTSNG VLLPFYDPDTSIIYLCGKGDSSIRYFEITDESPYVHYLNTFSSKEPQRGMGYMPKRGLDVNKCE IARFFKLHERKCEPIIMTVPRKSDLFQDDLYPDTAGPEAALEAEEWFEGKNADPILISLKHGYI PGKNRDLKVVKKNILDSKPTANKKCDLISVPKKTTDTASVQNEAKLDEILKEIKSIKDTICNQD ERISKLEQQMAKIAA hide sequence

RefSeq Acc Id:	XP_034790304 ⟸ XM_034934413
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AW85 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSPPAP00000019233 ⟸ ENSPPAT00000041988

Ensembl Acc Id:

ENSPPAP00000019239 ⟸ ENSPPAT00000041995

RefSeq Acc Id:	XP_057155503 ⟸ XM_057299520
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063449696 ⟸ XM_063593626
- Peptide Label:	isoform X3

Protein Domains

DUF1899

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000032787	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000041988.1	UniProtKB/TrEMBL
	ENSPPAT00000041995.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	Coronin	UniProtKB/TrEMBL
	DUF1899	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
NCBI Gene	CORO1C	ENTREZGENE
PANTHER	PTHR10856	UniProtKB/TrEMBL
	PTHR10856:SF10	UniProtKB/TrEMBL
Pfam	DUF1899	UniProtKB/TrEMBL
	WD40	UniProtKB/TrEMBL
	WD40_4	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
SMART	DUF1899	UniProtKB/TrEMBL
	DUF1900	UniProtKB/TrEMBL
	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/TrEMBL
UniProt	A0A2R9APZ3	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9AW85	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD