Coro1c (coronin, actin binding protein 1C) - Rat Genome Database

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Gene: Coro1c (coronin, actin binding protein 1C) Mus musculus
Analyze
Symbol: Coro1c
Name: coronin, actin binding protein 1C
RGD ID: 1314426
MGI Page MGI
Description: Enables small GTPase binding activity. Involved in several processes, including activation of GTPase activity; regulation of fibroblast migration; and regulation of ruffle assembly. Acts upstream of or within corpus callosum development and ventricular system development. Located in cytoskeleton. Part of flotillin complex. Is expressed in several structures, including brain; dorsal root ganglion; genitourinary system; liver; and spleen. Orthologous to human CORO1C (coronin 1C).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AL022675; AW455561; AW548837; coronin 1c; coronin 3; coronin-1C; coronin-3; CR; CRN2; MGC102522
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm5790  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395113,980,500 - 114,046,767 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5113,980,497 - 114,046,819 (-)EnsemblGRCm39 Ensembl
GRCm385113,842,439 - 113,908,706 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5113,842,436 - 113,908,758 (-)EnsemblGRCm38mm10GRCm38
MGSCv375114,292,448 - 114,358,715 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365114,103,438 - 114,169,705 (-)NCBIMGSCv36mm8
Celera5110,944,005 - 111,011,106 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.64NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-nitropyrene  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,6-dimethoxyphenol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
amitrole  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
beauvericin  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (EXP,ISO)
buspirone  (ISO)
butan-1-ol  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
enniatin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
fenthion  (EXP)
fulvestrant  (ISO)
furfural  (ISO)
gefitinib  (ISO)
genistein  (ISO)
gentamycin  (ISO)
indometacin  (ISO)
inulin  (EXP)
ivermectin  (ISO)
leflunomide  (ISO)
methimazole  (ISO)
microcystin-LR  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
nefazodone  (ISO)
nimesulide  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
pirinixic acid  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium chloride  (ISO)
sodium dichromate  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
valproic acid  (EXP,ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Exploring the Immune Infiltration Landscape and M2 Macrophage-Related Biomarkers of Proliferative Diabetic Retinopathy. Meng Z, etal., Front Endocrinol (Lausanne). 2022 May 27;13:841813. doi: 10.3389/fendo.2022.841813. eCollection 2022.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:9778037   PMID:10349636   PMID:10461187   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12377779   PMID:12477932   PMID:12520002  
PMID:12904583   PMID:14610273   PMID:15489334   PMID:15582152   PMID:15782199   PMID:15813925   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18725516   PMID:18768935   PMID:18799693  
PMID:20138020   PMID:20362548   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22364218   PMID:22922362   PMID:24270184   PMID:24457600   PMID:24614889   PMID:25074804   PMID:25925950  
PMID:26496610   PMID:27178841   PMID:28671696   PMID:29078390   PMID:29518331   PMID:30333137   PMID:30457570   PMID:30562941   PMID:30973865   PMID:31162944   PMID:31677819   PMID:32325033  
PMID:32554809   PMID:32581705   PMID:32686704   PMID:34321999   PMID:35657370   PMID:36114006   PMID:36293380   PMID:36417873   PMID:37142655   PMID:38355793  


Genomics

Comparative Map Data
Coro1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395113,980,500 - 114,046,767 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5113,980,497 - 114,046,819 (-)EnsemblGRCm39 Ensembl
GRCm385113,842,439 - 113,908,706 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5113,842,436 - 113,908,758 (-)EnsemblGRCm38mm10GRCm38
MGSCv375114,292,448 - 114,358,715 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365114,103,438 - 114,169,705 (-)NCBIMGSCv36mm8
Celera5110,944,005 - 111,011,106 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.64NCBI
CORO1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812108,645,109 - 108,731,518 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12108,645,109 - 108,731,526 (-)EnsemblGRCh38hg38GRCh38
GRCh3712109,038,885 - 109,125,294 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612107,563,014 - 107,649,424 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412107,541,354 - 107,627,761NCBI
Celera12108,708,285 - 108,794,696 (-)NCBICelera
Cytogenetic Map12q24.11NCBI
HuRef12106,103,254 - 106,190,451 (-)NCBIHuRef
CHM1_112109,005,617 - 109,092,972 (-)NCBICHM1_1
T2T-CHM13v2.012108,619,700 - 108,706,142 (-)NCBIT2T-CHM13v2.0
Coro1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81248,373,573 - 48,445,718 (+)NCBIGRCr8
mRatBN7.21242,713,024 - 42,785,179 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1242,712,991 - 42,785,179 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1243,907,113 - 43,949,533 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01244,520,715 - 44,563,133 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01243,581,242 - 43,623,661 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01248,481,741 - 48,554,054 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,481,750 - 48,554,052 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01250,264,710 - 50,337,014 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,747,188 - 43,819,356 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1244,343,663 - 44,386,096 (+)NCBICelera
Cytogenetic Map12q16NCBI
Coro1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554559,901,702 - 9,953,098 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554559,905,243 - 9,952,504 (-)NCBIChiLan1.0ChiLan1.0
CORO1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210116,709,930 - 116,795,288 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112116,706,328 - 116,791,686 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012106,220,755 - 106,306,098 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112109,617,087 - 109,702,129 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12109,617,093 - 109,674,368 (-)Ensemblpanpan1.1panPan2
CORO1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12618,161,707 - 18,236,654 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2618,176,441 - 18,236,652 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2617,565,220 - 17,640,232 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02618,505,707 - 18,580,881 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2618,505,739 - 18,582,355 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12617,774,249 - 17,849,531 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02618,496,473 - 18,573,357 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02618,515,317 - 18,590,632 (+)NCBIUU_Cfam_GSD_1.0
Coro1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118144,838,455 - 144,922,226 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936769553,642 - 637,008 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936769555,719 - 637,420 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CORO1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1442,062,893 - 42,145,123 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11442,062,468 - 42,145,130 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21444,605,492 - 44,688,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CORO1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111103,846,783 - 103,933,283 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11103,845,292 - 103,999,993 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037141,165,870 - 141,272,991 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Coro1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474711,879,215 - 11,963,250 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474711,879,315 - 11,967,496 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Coro1c
3686 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3498
Count of miRNA genes:791
Interacting mature miRNAs:1049
Transcripts:ENSMUST00000004646, ENSMUST00000111283, ENSMUST00000163264, ENSMUST00000163995, ENSMUST00000164980, ENSMUST00000166647, ENSMUST00000168399, ENSMUST00000168493, ENSMUST00000168634, ENSMUST00000171630, ENSMUST00000172016
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined598019649114021986Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104347866114738061Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301042Elmaz1_melevated maze behavior 1 (mouse)Not determined598019649116876624Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
1357886Diht_mdopamine-induced hypothermia (mouse)Not determined5104498738115101540Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587386871121387065Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined581019649115019803Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582838468116838597Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
11528550Sluc33_msusceptibility to lung cancer 33 (mouse)5104386871120711986Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5114021753129632606Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587386871121387065Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580849259114849259Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4141652Mrdq2_mmodifier of retinal degeneration QTL 2 (mouse)Not determined110253106118093673Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587386871121387065Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582838468116838597Mouse

Markers in Region
AW455561  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385113,842,577 - 113,842,724UniSTSGRCm38
MGSCv375114,292,586 - 114,292,733UniSTSGRCm37
Celera5110,944,143 - 110,944,290UniSTS
Cytogenetic Map5FUniSTS
Whitehead/MRC_RH51365.56UniSTS
AW548837  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385113,842,693 - 113,842,802UniSTSGRCm38
MGSCv375114,292,702 - 114,292,811UniSTSGRCm37
Celera5110,944,259 - 110,944,368UniSTS
Cytogenetic Map5FUniSTS
Whitehead/MRC_RH51364.16UniSTS
D5Mit25  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385113,883,692 - 113,883,925UniSTSGRCm38
MGSCv375114,333,701 - 114,333,934UniSTSGRCm37
Celera5110,986,192 - 110,986,425UniSTS
Cytogenetic Map5FUniSTS
cM Map561.0UniSTS
Whitehead Genetic545.9UniSTS
Whitehead_YAC5 UniSTS
RH125329  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385113,842,894 - 113,843,052UniSTSGRCm38
MGSCv375114,292,903 - 114,293,061UniSTSGRCm37
Celera5110,944,460 - 110,944,618UniSTS
Cytogenetic Map5FUniSTS
UniSTS:235265  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385113,894,256 - 113,894,461UniSTSGRCm38
MGSCv375114,344,265 - 114,344,470UniSTSGRCm37
Celera5110,996,735 - 110,996,940UniSTS
Cytogenetic Map5FUniSTS
UniSTS:235269  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385113,843,438 - 113,843,538UniSTSGRCm38
MGSCv375114,293,447 - 114,293,547UniSTSGRCm37
Celera5110,945,004 - 110,945,104UniSTS
Cytogenetic Map5FUniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF143957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000004646   ⟹   ENSMUSP00000004646
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,980,497 - 114,046,819 (-)Ensembl
GRCm38.p6 Ensembl5113,842,436 - 113,908,758 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111283
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,986,169 - 113,987,731 (-)Ensembl
GRCm38.p6 Ensembl5113,848,108 - 113,849,670 (-)Ensembl
Ensembl Acc Id: ENSMUST00000163264   ⟹   ENSMUSP00000129457
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5114,003,762 - 114,021,006 (-)Ensembl
GRCm38.p6 Ensembl5113,865,701 - 113,882,945 (-)Ensembl
Ensembl Acc Id: ENSMUST00000163995
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,983,304 - 113,988,923 (-)Ensembl
GRCm38.p6 Ensembl5113,845,243 - 113,850,862 (-)Ensembl
Ensembl Acc Id: ENSMUST00000164980   ⟹   ENSMUSP00000129314
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,980,497 - 114,046,766 (-)Ensembl
GRCm38.p6 Ensembl5113,842,436 - 113,908,705 (-)Ensembl
Ensembl Acc Id: ENSMUST00000166647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,986,614 - 114,012,709 (-)Ensembl
GRCm38.p6 Ensembl5113,848,553 - 113,874,648 (-)Ensembl
Ensembl Acc Id: ENSMUST00000168399   ⟹   ENSMUSP00000132504
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5114,003,820 - 114,020,492 (-)Ensembl
GRCm38.p6 Ensembl5113,865,759 - 113,882,431 (-)Ensembl
Ensembl Acc Id: ENSMUST00000168493
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,986,673 - 113,996,835 (-)Ensembl
GRCm38.p6 Ensembl5113,848,612 - 113,858,774 (-)Ensembl
Ensembl Acc Id: ENSMUST00000168634
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,983,315 - 113,987,926 (-)Ensembl
GRCm38.p6 Ensembl5113,845,254 - 113,849,865 (-)Ensembl
Ensembl Acc Id: ENSMUST00000171630
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5114,015,124 - 114,046,706 (-)Ensembl
GRCm38.p6 Ensembl5113,877,063 - 113,908,645 (-)Ensembl
Ensembl Acc Id: ENSMUST00000172016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,984,250 - 113,985,681 (-)Ensembl
GRCm38.p6 Ensembl5113,846,189 - 113,847,620 (-)Ensembl
RefSeq Acc Id: NM_011779   ⟹   NP_035909
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,980,500 - 114,046,767 (-)NCBI
GRCm385113,842,439 - 113,908,706 (-)ENTREZGENE
MGSCv375114,292,448 - 114,358,715 (-)RGD
Celera5110,944,005 - 111,011,106 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_035909   ⟸   NM_011779
- UniProtKB: Q9WUM4 (UniProtKB/Swiss-Prot),   Q8VCQ5 (UniProtKB/Swiss-Prot),   Q3TF74 (UniProtKB/TrEMBL),   Q5PPQ7 (UniProtKB/TrEMBL),   Q499X7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000129314   ⟸   ENSMUST00000164980
Ensembl Acc Id: ENSMUSP00000129457   ⟸   ENSMUST00000163264
Ensembl Acc Id: ENSMUSP00000132504   ⟸   ENSMUST00000168399
Ensembl Acc Id: ENSMUSP00000004646   ⟸   ENSMUST00000004646
Protein Domains
DUF1899

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WUM4-F1-model_v2 AlphaFold Q9WUM4 1-474 view protein structure

Promoters
RGD ID:6887650
Promoter ID:EPDNEW_M7276
Type:initiation region
Name:Coro1c_1
Description:Mus musculus coronin, actin binding protein 1C , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385113,908,697 - 113,908,757EPDNEW
RGD ID:6847896
Promoter ID:MM_ACW:39042
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:CORO1C.ESEP07,   CORO1C.ISEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365114,300,196 - 114,300,696 (-)MPROMDB
RGD ID:6837295
Promoter ID:MM_KWN:43524
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:NM_011779,   UC008YYW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365114,358,241 - 114,359,297 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1345964 AgrOrtholog
Ensembl Genes ENSMUSG00000004530 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000004646 ENTREZGENE
  ENSMUST00000004646.13 UniProtKB/Swiss-Prot
  ENSMUST00000163264.8 UniProtKB/TrEMBL
  ENSMUST00000164980.8 UniProtKB/TrEMBL
  ENSMUST00000168399.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Coronin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF1899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:23790 UniProtKB/Swiss-Prot
MGD MGI:1345964 ENTREZGENE
NCBI Gene 23790 ENTREZGENE
PANTHER PTHR10856 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10856:SF10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Coro1c PhenoGen
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DUF1899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF1900 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Nucleoporin domain UniProtKB/TrEMBL
  SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt COR1C_MOUSE UniProtKB/Swiss-Prot
  E9PVJ1_MOUSE UniProtKB/TrEMBL
  E9PX03_MOUSE UniProtKB/TrEMBL
  E9PZJ0_MOUSE UniProtKB/TrEMBL
  Q3TEU8_MOUSE UniProtKB/TrEMBL
  Q3TF74 ENTREZGENE, UniProtKB/TrEMBL
  Q3U8F0_MOUSE UniProtKB/TrEMBL
  Q499X7 ENTREZGENE
  Q5PPQ7 ENTREZGENE, UniProtKB/TrEMBL
  Q8VCQ5 ENTREZGENE
  Q9WUM4 ENTREZGENE
UniProt Secondary Q3UA51 UniProtKB/TrEMBL
  Q499X7 UniProtKB/Swiss-Prot
  Q8VCQ5 UniProtKB/Swiss-Prot