FMN1 (formin 1) - Rat Genome Database

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Gene: FMN1 (formin 1) Pan paniscus
Analyze
Symbol: FMN1
Name: formin 1
RGD ID: 11978313
Description: ENCODES a protein that exhibits actin filament binding (inferred); microtubule binding (inferred); SH3 domain binding (inferred); INVOLVED IN forelimb morphogenesis (ortholog); gene expression (ortholog); hindlimb morphogenesis (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH alcohol dependence (ortholog); FOUND IN actin filament (inferred); cytoplasm (inferred); cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: formin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21621,540,304 - 21,971,453 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11526,261,987 - 26,693,020 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01511,271,794 - 11,698,539 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11530,105,345 - 30,534,051 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1530,114,113 - 30,495,909 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FMN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21621,540,304 - 21,971,453 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11526,261,987 - 26,693,020 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01511,271,794 - 11,698,539 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11530,105,345 - 30,534,051 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1530,114,113 - 30,495,909 (-)Ensemblpanpan1.1panPan2
FMN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381532,765,544 - 33,194,714 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1532,765,544 - 33,194,714 (-)EnsemblGRCh38hg38GRCh38
GRCh371533,057,745 - 33,486,915 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361530,853,637 - 31,147,377 (-)NCBINCBI36Build 36hg18NCBI36
Celera159,859,583 - 10,161,753 (-)NCBICelera
Cytogenetic Map15q13.3NCBI
HuRef159,919,586 - 10,348,532 (-)NCBIHuRef
CHM1_11533,175,802 - 33,604,909 (-)NCBICHM1_1
T2T-CHM13v2.01530,562,099 - 30,991,198 (-)NCBIT2T-CHM13v2.0
Fmn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392113,158,029 - 113,547,113 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2113,158,081 - 113,547,112 (+)EnsemblGRCm39 Ensembl
GRCm382113,327,664 - 113,716,768 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2113,327,736 - 113,716,767 (+)EnsemblGRCm38mm10GRCm38
MGSCv372113,167,893 - 113,556,924 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362113,128,621 - 113,510,694 (+)NCBIMGSCv36mm8
Celera2114,475,948 - 114,857,068 (+)NCBICelera
Cytogenetic Map2E4NCBI
cM Map257.3NCBI
Fmn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83120,555,445 - 120,939,978 (+)NCBIGRCr8
mRatBN7.23100,101,103 - 100,485,652 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3100,134,549 - 100,479,220 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03104,783,093 - 105,170,761 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3104,816,987 - 105,086,436 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03111,402,075 - 111,748,675 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4399,298,261 - 99,564,034 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1399,093,741 - 99,460,041 (+)NCBI
Celera399,081,027 - 99,451,618 (+)NCBICelera
Cytogenetic Map3q35NCBI
Fmn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554161,365,765 - 1,774,027 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554161,365,797 - 1,774,025 (+)NCBIChiLan1.0ChiLan1.0
FMN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1301,782,726 - 2,215,449 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl301,815,512 - 2,184,909 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha301,831,514 - 2,265,024 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0301,887,585 - 2,328,019 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl301,886,557 - 2,306,834 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1301,830,799 - 2,264,355 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0301,930,068 - 2,363,602 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0302,058,309 - 2,491,979 (+)NCBIUU_Cfam_GSD_1.0
Fmn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864080,312,906 - 80,727,325 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366731,432,927 - 1,719,966 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366731,424,513 - 1,838,277 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FMN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1136,704,090 - 137,163,537 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11136,696,353 - 137,163,532 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21153,217,402 - 153,269,191 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FMN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12649,700,309 - 50,117,799 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2649,734,553 - 49,996,405 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604890,768,699 - 91,187,937 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fmn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248041,155,071 - 1,558,145 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248041,124,322 - 1,558,781 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000057633   ⟹   ENSPPAP00000034749
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1530,114,113 - 30,495,909 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000057635   ⟹   ENSPPAP00000034751
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1530,114,113 - 30,495,909 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000057638   ⟹   ENSPPAP00000034754
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1530,114,113 - 30,408,909 (-)Ensembl
RefSeq Acc Id: XM_034938470   ⟹   XP_034794361
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21621,540,304 - 21,855,680 (-)NCBI
NHGRI_mPanPan11526,261,987 - 26,577,266 (-)NCBI
Mhudiblu_PPA_v01511,271,794 - 11,574,978 (-)NCBI
RefSeq Acc Id: XM_055098140   ⟹   XP_054954115
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21621,540,304 - 21,971,453 (-)NCBI
NHGRI_mPanPan11526,261,987 - 26,693,020 (-)NCBI
RefSeq Acc Id: XM_063596522   ⟹   XP_063452592
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21621,540,304 - 21,957,040 (-)NCBI
RefSeq Acc Id: XM_063596523   ⟹   XP_063452593
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21621,578,806 - 21,855,680 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034794361 (Get FASTA)   NCBI Sequence Viewer  
  XP_054954115 (Get FASTA)   NCBI Sequence Viewer  
  XP_063452592 (Get FASTA)   NCBI Sequence Viewer  
  XP_063452593 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000034749.1
  ENSPPAP00000034751.1
  ENSPPAP00000034754.1
RefSeq Acc Id: XP_034794361   ⟸   XM_034938470
- Peptide Label: isoform X3
- UniProtKB: A0A2R9C8K1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000034751   ⟸   ENSPPAT00000057635
Ensembl Acc Id: ENSPPAP00000034754   ⟸   ENSPPAT00000057638
Ensembl Acc Id: ENSPPAP00000034749   ⟸   ENSPPAT00000057633
RefSeq Acc Id: XP_054954115   ⟸   XM_055098140
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C8J6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452592   ⟸   XM_063596522
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BZ52 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452593   ⟸   XM_063596523
- Peptide Label: isoform X4
- UniProtKB: A0A2R9C8K1 (UniProtKB/TrEMBL)
Protein Domains
FH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040177 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000057633.1 UniProtKB/TrEMBL
  ENSPPAT00000057635.1 UniProtKB/TrEMBL
  ENSPPAT00000057638.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.2220 UniProtKB/TrEMBL
InterPro FH2_Formin UniProtKB/TrEMBL
  FH2_Formin_sf UniProtKB/TrEMBL
  Formin_Cappuccino_subfam UniProtKB/TrEMBL
NCBI Gene FMN1 ENTREZGENE
PANTHER FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I UniProtKB/TrEMBL
  FORMIN-G UniProtKB/TrEMBL
Pfam FH2 UniProtKB/TrEMBL
PRINTS FORMIN UniProtKB/TrEMBL
PROSITE FH2 UniProtKB/TrEMBL
SMART FH2 UniProtKB/TrEMBL
Superfamily-SCOP Formin homology 2 domain (FH2 domain) UniProtKB/TrEMBL
UniProt A0A2R9BZ52 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C8J6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C8K1 ENTREZGENE, UniProtKB/TrEMBL