FMN1 (formin 1) - Rat Genome Database

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Gene: FMN1 (formin 1) Sus scrofa
Analyze
Symbol: FMN1
Name: formin 1
RGD ID: 13859541
Description: ENCODES a protein that exhibits SH3 domain binding (ortholog); INVOLVED IN dendrite morphogenesis (ortholog); forelimb morphogenesis (ortholog); gene expression (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog); microtubule cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: formin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1136,704,090 - 137,065,258 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11136,696,353 - 137,163,532 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21153,217,402 - 153,269,191 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FMN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1136,704,090 - 137,065,258 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11136,696,353 - 137,163,532 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21153,217,402 - 153,269,191 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FMN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381532,765,544 - 33,194,714 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1532,765,544 - 33,194,714 (-)EnsemblGRCh38hg38GRCh38
GRCh371533,057,745 - 33,486,915 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361530,853,637 - 31,147,377 (-)NCBINCBI36Build 36hg18NCBI36
Celera159,859,583 - 10,161,753 (-)NCBICelera
Cytogenetic Map15q13.3NCBI
HuRef159,919,586 - 10,348,532 (-)NCBIHuRef
CHM1_11533,175,802 - 33,604,909 (-)NCBICHM1_1
T2T-CHM13v2.01530,562,099 - 30,991,198 (-)NCBIT2T-CHM13v2.0
Fmn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392113,158,029 - 113,547,113 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2113,158,081 - 113,547,112 (+)EnsemblGRCm39 Ensembl
GRCm382113,327,664 - 113,716,768 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2113,327,736 - 113,716,767 (+)EnsemblGRCm38mm10GRCm38
MGSCv372113,167,893 - 113,556,924 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362113,128,621 - 113,510,694 (+)NCBIMGSCv36mm8
Celera2114,475,948 - 114,857,068 (+)NCBICelera
Cytogenetic Map2E4NCBI
cM Map257.3NCBI
Fmn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83120,555,445 - 120,939,978 (+)NCBIGRCr8
mRatBN7.23100,101,103 - 100,485,652 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3100,134,549 - 100,479,220 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03104,783,093 - 105,170,761 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3104,816,987 - 105,086,436 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03111,402,075 - 111,748,675 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4399,298,261 - 99,564,034 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1399,093,741 - 99,460,041 (+)NCBI
Celera399,081,027 - 99,451,618 (+)NCBICelera
Cytogenetic Map3q35NCBI
Fmn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554161,365,765 - 1,774,027 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554161,365,797 - 1,774,025 (+)NCBIChiLan1.0ChiLan1.0
FMN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21621,540,304 - 21,971,453 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11526,261,987 - 26,693,020 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01511,271,794 - 11,698,539 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11530,105,345 - 30,534,051 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1530,114,113 - 30,495,909 (-)Ensemblpanpan1.1panPan2
FMN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1301,782,726 - 2,215,449 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl301,815,512 - 2,184,909 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha301,831,514 - 2,265,024 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0301,887,585 - 2,328,019 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl301,886,557 - 2,306,834 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1301,830,799 - 2,264,355 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0301,930,068 - 2,363,602 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0302,058,309 - 2,491,979 (+)NCBIUU_Cfam_GSD_1.0
Fmn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864080,312,906 - 80,727,325 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366731,432,927 - 1,719,966 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366731,424,513 - 1,838,277 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FMN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12649,700,309 - 50,117,799 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2649,734,553 - 49,996,405 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604890,768,699 - 91,187,937 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fmn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248041,155,071 - 1,558,145 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248041,124,322 - 1,558,781 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FMN1
7079 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000061506   ⟹   ENSSSCP00000053085
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1136,704,090 - 137,008,721 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000101189   ⟹   ENSSSCP00000079127
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1136,704,090 - 137,065,258 (-)Ensembl
RefSeq Acc Id: XM_021098316   ⟹   XP_020953975
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11136,696,353 - 137,163,532 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020953975 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000053085.2
  ENSSSCP00000079127.1
  ENSSSCP00005008639.1
  ENSSSCP00005008664.1
RefSeq Acc Id: XP_020953975   ⟸   XM_021098316
- UniProtKB: A0A8D0IH25 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000053085   ⟸   ENSSSCT00000061506
RefSeq Acc Id: ENSSSCP00000079127   ⟸   ENSSSCT00000101189
Protein Domains
FH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000044690 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00005008797 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000061506.2 UniProtKB/TrEMBL
  ENSSSCT00000101189.1 UniProtKB/TrEMBL
  ENSSSCT00005014510.1 UniProtKB/TrEMBL
  ENSSSCT00005014544.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.2220 UniProtKB/TrEMBL
InterPro FH2_Formin UniProtKB/TrEMBL
  FH2_Formin_sf UniProtKB/TrEMBL
  Formin_Cappuccino_subfam UniProtKB/TrEMBL
NCBI Gene FMN1 ENTREZGENE
PANTHER FORMIN UniProtKB/TrEMBL
  FORMIN-1 UniProtKB/TrEMBL
Pfam FH2 UniProtKB/TrEMBL
PRINTS FORMIN UniProtKB/TrEMBL
PROSITE FH2 UniProtKB/TrEMBL
SMART FH2 UniProtKB/TrEMBL
Superfamily-SCOP Formin homology 2 domain (FH2 domain) UniProtKB/TrEMBL
UniProt A0A287B9C3_PIG UniProtKB/TrEMBL
  A0A8D0IH25 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FIR8_PIG UniProtKB/TrEMBL