ZYX (zyxin) - Rat Genome Database

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Gene: ZYX (zyxin) Pan paniscus
Analyze
Symbol: ZYX
Name: zyxin
RGD ID: 11749561
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN cellular response to type II interferon (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH Colorectal Neoplasms (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (inferred); adherens junction (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26180,214,476 - 180,243,958 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1732,244,306 - 32,254,215 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07135,375,816 - 135,385,871 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17147,865,444 - 147,875,017 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7147,865,440 - 147,875,017 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZYX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26180,214,476 - 180,243,958 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1732,244,306 - 32,254,215 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07135,375,816 - 135,385,871 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17147,865,444 - 147,875,017 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7147,865,440 - 147,875,017 (+)Ensemblpanpan1.1panPan2
ZYX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387143,381,345 - 143,391,111 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7143,381,295 - 143,391,111 (+)EnsemblGRCh38hg38GRCh38
GRCh377143,078,438 - 143,088,204 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367142,788,482 - 142,798,326 (+)NCBINCBI36Build 36hg18NCBI36
Build 347142,595,196 - 142,605,039NCBI
Celera7137,915,624 - 137,925,468 (+)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7137,415,678 - 137,425,520 (+)NCBIHuRef
CHM1_17143,015,288 - 143,025,131 (+)NCBICHM1_1
T2T-CHM13v2.07144,736,772 - 144,746,538 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27142,480,492 - 142,490,336 (+)NCBI
Zyx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39642,326,507 - 42,337,158 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl642,326,564 - 42,337,147 (+)EnsemblGRCm39 Ensembl
GRCm38642,349,511 - 42,360,213 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl642,349,630 - 42,360,213 (+)EnsemblGRCm38mm10GRCm38
MGSCv37642,299,827 - 42,308,394 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36642,279,864 - 42,288,002 (+)NCBIMGSCv36mm8
Celera642,294,470 - 42,303,037 (+)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map620.64NCBI
Zyx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8472,203,991 - 72,213,181 (+)NCBIGRCr8
mRatBN7.2471,236,767 - 71,246,553 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl471,237,451 - 71,246,553 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx476,157,528 - 76,166,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0472,070,785 - 72,079,733 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0470,490,387 - 70,499,150 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0471,740,188 - 71,749,386 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl471,740,532 - 71,749,386 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04136,544,775 - 136,553,784 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4470,119,162 - 70,128,016 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1470,401,995 - 70,403,616 (+)NCBI
Celera466,168,190 - 66,177,032 (+)NCBICelera
Cytogenetic Map4q24NCBI
Zyx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955494269,222 - 276,904 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955494268,844 - 277,381 (-)NCBIChiLan1.0ChiLan1.0
ZYX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1166,304,163 - 6,313,923 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha167,292,681 - 7,301,847 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0166,157,384 - 6,166,501 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl166,157,384 - 6,188,234 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1166,105,301 - 6,114,400 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0165,956,860 - 5,966,008 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0166,032,095 - 6,041,208 (-)NCBIUU_Cfam_GSD_1.0
Zyx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511812,070,048 - 12,079,397 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936527824,489 - 833,005 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936527823,973 - 833,387 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZYX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl186,861,077 - 6,870,265 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1186,861,072 - 6,870,256 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2187,099,073 - 7,111,110 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZYX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121112,266,880 - 112,277,083 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660729,012,426 - 9,022,983 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zyx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480011,381,178 - 11,389,271 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480011,380,787 - 11,389,418 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000033934   ⟹   ENSPPAP00000011279
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7147,865,440 - 147,875,017 (+)Ensembl
RefSeq Acc Id: XM_034965141   ⟹   XP_034821032
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26180,233,726 - 180,243,958 (+)NCBI
NHGRI_mPanPan1732,244,306 - 32,254,215 (+)NCBI
Mhudiblu_PPA_v07135,375,816 - 135,385,871 (+)NCBI
RefSeq Acc Id: XM_034965142   ⟹   XP_034821033
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26180,233,726 - 180,243,958 (+)NCBI
NHGRI_mPanPan1732,244,306 - 32,254,215 (+)NCBI
Mhudiblu_PPA_v07135,375,925 - 135,385,871 (+)NCBI
RefSeq Acc Id: XM_063606400   ⟹   XP_063462470
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26180,214,476 - 180,243,958 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034821032 (Get FASTA)   NCBI Sequence Viewer  
  XP_034821033 (Get FASTA)   NCBI Sequence Viewer  
  XP_063462470 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000011279.1
Reference Protein Sequences
RefSeq Acc Id: XP_034821032   ⟸   XM_034965141
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A335 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034821033   ⟸   XM_034965142
- Peptide Label: isoform X2
- UniProtKB: A0A2R9A335 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000011279   ⟸   ENSPPAT00000033934
RefSeq Acc Id: XP_063462470   ⟸   XM_063606400
- Peptide Label: isoform X3
Protein Domains
LIM zinc-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028847 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000033934.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
InterPro Znf_LIM UniProtKB/TrEMBL
NCBI Gene ZYX ENTREZGENE
PANTHER ZYXIN UniProtKB/TrEMBL
  ZYXIN/TRIP6 UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_2 UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A2R9A335 ENTREZGENE, UniProtKB/TrEMBL