ADAMTS9 (ADAM metallopeptidase with thrombospondin type 1 motif 9) - Rat Genome Database

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Gene: ADAMTS9 (ADAM metallopeptidase with thrombospondin type 1 motif 9) Pan paniscus
Analyze
Symbol: ADAMTS9
Name: ADAM metallopeptidase with thrombospondin type 1 motif 9
RGD ID: 11759231
Description: ENCODES a protein that exhibits endopeptidase activity (inferred); hydrolase activity (inferred); metal ion binding (inferred); INVOLVED IN aorta morphogenesis (ortholog); camera-type eye morphogenesis (ortholog); cornea development in camera-type eye (ortholog); ASSOCIATED WITH genetic disease (ortholog); nephronophthisis (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN cell surface (inferred); endoplasmic reticulum (inferred); extracellular matrix (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: A disintegrin and metalloproteinase with thrombospondin motifs 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2264,435,288 - 64,610,924 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1364,440,076 - 64,615,781 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0364,415,621 - 64,590,984 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1365,792,223 - 65,967,631 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl365,792,223 - 65,967,631 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ADAMTS9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2264,435,288 - 64,610,924 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1364,440,076 - 64,615,781 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0364,415,621 - 64,590,984 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1365,792,223 - 65,967,631 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl365,792,223 - 65,967,631 (-)Ensemblpanpan1.1panPan2
ADAMTS9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38364,515,654 - 64,688,000 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl364,515,654 - 64,688,000 (-)EnsemblGRCh38hg38GRCh38
GRCh37364,501,330 - 64,673,676 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36364,476,370 - 64,648,405 (-)NCBINCBI36Build 36hg18NCBI36
Build 34364,510,864 - 64,648,405NCBI
Celera364,518,077 - 64,690,097 (-)NCBICelera
Cytogenetic Map3p14.1NCBI
HuRef364,598,534 - 64,770,557 (-)NCBIHuRef
CHM1_1364,452,995 - 64,625,019 (-)NCBICHM1_1
T2T-CHM13v2.0364,559,268 - 64,731,664 (-)NCBIT2T-CHM13v2.0
Adamts9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39692,749,680 - 92,921,431 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl692,749,680 - 92,920,473 (-)EnsemblGRCm39 Ensembl
GRCm38692,772,699 - 92,944,450 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl692,772,699 - 92,943,492 (-)EnsemblGRCm38mm10GRCm38
MGSCv37692,722,693 - 92,851,435 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera694,664,224 - 94,793,353 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map641.41NCBI
Adamts9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84126,847,726 - 127,019,924 (-)NCBIGRCr8
mRatBN7.24125,290,633 - 125,462,988 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4125,291,490 - 125,462,929 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4130,758,464 - 130,930,020 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04126,532,883 - 126,704,446 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04125,157,449 - 125,329,013 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04124,660,254 - 124,860,997 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4124,660,262 - 124,858,250 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04188,409,387 - 188,604,223 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44126,996,604 - 127,198,909 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14127,242,243 - 127,529,307 (-)NCBI
Celera4114,207,098 - 114,377,105 (-)NCBICelera
Cytogenetic Map4q34NCBI
Adamts9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555171,302,922 - 1,440,245 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555171,302,560 - 1,443,708 (+)NCBIChiLan1.0ChiLan1.0
ADAMTS9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12026,589,529 - 26,749,422 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2026,588,654 - 26,748,604 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2026,514,671 - 26,674,068 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02026,630,243 - 26,790,304 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2026,629,348 - 26,789,486 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12026,324,394 - 26,484,009 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02026,676,416 - 26,835,956 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02026,736,222 - 26,895,640 (+)NCBIUU_Cfam_GSD_1.0
Adamts9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118163,398,425 - 163,556,712 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366371,788,276 - 1,942,833 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366371,787,987 - 1,946,250 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADAMTS9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1346,034,833 - 46,207,006 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11346,033,753 - 46,209,238 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21350,519,007 - 50,690,497 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ADAMTS9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12225,545,518 - 25,720,512 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2225,545,420 - 25,719,362 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041141,094,985 - 141,269,306 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adamts9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248881,333,714 - 1,474,897 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248881,333,534 - 1,474,776 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000031158   ⟹   ENSPPAP00000008522
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl365,792,223 - 65,967,631 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000031163   ⟹   ENSPPAP00000008527
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl365,792,223 - 65,967,631 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000031169   ⟹   ENSPPAP00000008533
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl365,801,578 - 65,967,287 (-)Ensembl
RefSeq Acc Id: XM_003811597   ⟹   XP_003811645
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2264,435,288 - 64,610,924 (-)NCBI
NHGRI_mPanPan1364,440,076 - 64,615,781 (-)NCBI
Mhudiblu_PPA_v0364,415,621 - 64,590,984 (-)NCBI
PanPan1.1365,792,223 - 65,967,631 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003811598   ⟹   XP_003811646
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2264,435,288 - 64,610,924 (-)NCBI
NHGRI_mPanPan1364,440,076 - 64,615,780 (-)NCBI
Mhudiblu_PPA_v0364,415,621 - 64,590,984 (-)NCBI
PanPan1.1365,792,223 - 65,967,631 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063602800   ⟹   XP_063458870
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2264,435,288 - 64,610,924 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003811645 (Get FASTA)   NCBI Sequence Viewer  
  XP_003811646 (Get FASTA)   NCBI Sequence Viewer  
  XP_063458870 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000008522.1
  ENSPPAP00000008527.1
  ENSPPAP00000008533.1
Reference Protein Sequences
RefSeq Acc Id: XP_003811646   ⟸   XM_003811598
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZXK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003811645   ⟸   XM_003811597
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZXK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000008533   ⟸   ENSPPAT00000031169
RefSeq Acc Id: ENSPPAP00000008527   ⟸   ENSPPAT00000031163
RefSeq Acc Id: ENSPPAP00000008522   ⟸   ENSPPAT00000031158
RefSeq Acc Id: XP_063458870   ⟸   XM_063602800
- Peptide Label: isoform X3
Protein Domains
GON   Peptidase M12B


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027506 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000031158.1 UniProtKB/TrEMBL
  ENSPPAT00000031163.1 UniProtKB/TrEMBL
  ENSPPAT00000031169.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.100.10 UniProtKB/TrEMBL
  2.60.120.830 UniProtKB/TrEMBL
  3.40.1620.60 UniProtKB/TrEMBL
  3.40.390.10 UniProtKB/TrEMBL
InterPro ADAM_CR_2 UniProtKB/TrEMBL
  ADAM_spacer1 UniProtKB/TrEMBL
  ADAMTS/ADAMTS-like UniProtKB/TrEMBL
  ADAMTS_CR_3 UniProtKB/TrEMBL
  MetalloPept_cat_dom_sf UniProtKB/TrEMBL
  Pept_M12B_GON-ADAMTSs UniProtKB/TrEMBL
  Peptidase_M12B UniProtKB/TrEMBL
  Peptidase_M12B_N UniProtKB/TrEMBL
  TSP1_rpt UniProtKB/TrEMBL
  TSP1_rpt_sf UniProtKB/TrEMBL
KEGG Report pps:100977091 UniProtKB/TrEMBL
NCBI Gene ADAMTS9 ENTREZGENE
PANTHER ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE UniProtKB/TrEMBL
  RANDOM SLUG CDNA22 PROTEIN UniProtKB/TrEMBL
Pfam ADAM_CR_2 UniProtKB/TrEMBL
  ADAM_CR_3 UniProtKB/TrEMBL
  ADAM_spacer1 UniProtKB/TrEMBL
  GON UniProtKB/TrEMBL
  Pep_M12B_propep UniProtKB/TrEMBL
  Reprolysin UniProtKB/TrEMBL
  TSP1_ADAMTS UniProtKB/TrEMBL
  TSP_1 UniProtKB/TrEMBL
PRINTS ADAMTSFAMILY UniProtKB/TrEMBL
PROSITE ADAM_MEPRO UniProtKB/TrEMBL
  GON UniProtKB/TrEMBL
  TSP1 UniProtKB/TrEMBL
SMART TSP1 UniProtKB/TrEMBL
Superfamily-SCOP Metalloproteases ('zincins'), catalytic domain UniProtKB/TrEMBL
  SSF82895 UniProtKB/TrEMBL
UniProt A0A2R8ZXK3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZXK9 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZZX2_PANPA UniProtKB/TrEMBL