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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine nucleotide metabolic process
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Accession:GO:0006220 term browser browse the term
Definition:The chemical reactions and pathways involving a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine nucleotide metabolism
 broad_synonym: pyrimidine metabolic process;   pyrimidine metabolism


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pyrimidine nucleotide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dck deoxycytidine kinase involved_in ISO
ISS		 (PMID:12808445)
GO_REF:0000024		 RGD
UniProt		 PMID:12808445 GO_REF:0000024 NCBI chr14:19,305,218...19,326,247
Ensembl chr14:19,305,218...19,326,247 		JBrowse link
G Dctd dCMP deaminase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446 		JBrowse link
G Enpp3 ectonucleotide pyrophosphatase/phosphodiesterase 3 involved_in ISS
ISO		 GO_REF:0000024
(PMID:11342463)		 UniProt
RGD		 PMID:11342463 GO_REF:0000024 NCBI chr 1:20,563,700...20,635,044
Ensembl chr 1:20,563,697...20,635,041 		JBrowse link
G Upp1 uridine phosphorylase 1 acts_upstream_of_or_within ISO MGI:3586525 (PMID:15772079) RGD PMID:15772079 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
'de novo' CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 CTP synthase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:134,125,022...134,154,155
Ensembl chr 5:134,125,025...134,154,180 		JBrowse link
G Ctps2 CTP synthase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr  X:31,645,873...31,786,733
Ensembl chr  X:31,645,873...31,786,733 		JBrowse link
'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA
ISO		 GO_REF:0000041
(PMID:33771897)
(PMID:25678555)		 UniProt
RGD		 PMID:25678555 PMID:33771897 GO_REF:0000041 NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861 		JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IEA
ISO		 GO_REF:0000041
(PMID:30449682), (PMID:6249586)		 UniProt
RGD		 PMID:6249586 PMID:30449682 GO_REF:0000041 NCBI chr19:37,551,858...37,573,327
Ensembl chr19:37,558,177...37,591,654 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IEA
ISO		 GO_REF:0000041
(PMID:2419341), (PMID:6154574)		 UniProt
RGD		 PMID:2419341 PMID:6154574 GO_REF:0000041 NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903 		JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:3010881 GO_REF:0000033, RGD:5133253 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
CMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dck deoxycytidine kinase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:19,305,218...19,326,247
Ensembl chr14:19,305,218...19,326,247 		JBrowse link
G Uck1 uridine-cytidine kinase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:15,538,580...15,544,465
Ensembl chr 3:15,538,591...15,544,465 		JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:79,380,807...79,438,121
Ensembl chr13:79,383,846...79,438,352 		JBrowse link
CMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
G Nt5c3a 5'-nucleotidase, cytosolic IIIA involved_in ISO (PMID:22925580) RGD PMID:22925580 NCBI chr 4:86,161,642...86,204,656
Ensembl chr 4:86,161,643...86,204,628 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) RGD PMID:5472365 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:14715930) RGD PMID:14715930 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:14715930) RGD PMID:14715930 NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417 		JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 CTP synthase 1 involved_in ISO
IBA		 (PMID:16179339), (PMID:24870241)
GO_REF:0000033		 RGD
GO_Central		 PMID:16179339 PMID:24870241 GO_REF:0000033 NCBI chr 5:134,125,022...134,154,155
Ensembl chr 5:134,125,025...134,154,180 		JBrowse link
G Ctps2 CTP synthase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:31,645,873...31,786,733
Ensembl chr  X:31,645,873...31,786,733 		JBrowse link
G Decr2 2,4-dienoyl-CoA reductase 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,104,907...15,113,281
Ensembl chr10:15,002,926...15,118,479 		JBrowse link
G ENSRNOG00000062879 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr  X:36,618,074...36,618,881 JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:78,907,036...78,929,659
Ensembl chr10:78,906,083...78,916,408 		JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 involved_in IDA
IEA		 GO_REF:0000002 InterPro
RGD		 PMID:1316151 GO_REF:0000002, RGD:729254 NCBI chr10:78,898,097...78,903,514
Ensembl chr10:78,897,770...78,903,538 		JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:13,917,309...13,918,415
Ensembl chr10:13,917,403...13,918,359 		JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,114,624...15,118,479
Ensembl chr10:15,002,926...15,118,479 		JBrowse link
G Nme5 NME/NM23 family member 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:26,163,558...26,180,742
Ensembl chr18:26,163,555...26,180,794 		JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:109,832,085...109,839,301
Ensembl chr 8:109,832,589...109,839,301 		JBrowse link
G Nme7 NME/NM23 family member 7 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:76,657,303...76,786,768
Ensembl chr13:76,657,367...76,786,765 		JBrowse link
G Rab11fip3 RAB11 family interacting protein 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,002,650...15,086,382
Ensembl chr10:15,002,926...15,118,479 		JBrowse link
CTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO (PMID:11278936) RGD PMID:11278936 NCBI chr 1:242,559,365...242,601,044
Ensembl chr 1:242,559,365...242,601,447 		JBrowse link
CTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO
IBA		 (PMID:10858452)
GO_REF:0000033		 RGD
GO_Central		 PMID:10858452 GO_REF:0000033 NCBI chr15:44,630,878...44,658,654
Ensembl chr15:44,630,873...44,658,706 		JBrowse link
CTP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck1 uridine-cytidine kinase 1 involved_in ISO
IEA		 (PMID:11306702)
GO_REF:0000041		 RGD
UniProt		 PMID:11306702 GO_REF:0000041 NCBI chr 3:15,538,580...15,544,465
Ensembl chr 3:15,538,591...15,544,465 		JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in IEA
ISO
ISS		 GO_REF:0000041
(PMID:11306702)
GO_REF:0000024		 UniProt
RGD		 PMID:11306702 GO_REF:0000024 GO_REF:0000041 NCBI chr13:79,380,807...79,438,121
Ensembl chr13:79,383,846...79,438,352 		JBrowse link
G Uckl1 uridine-cytidine kinase 1-like 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:168,674,849...168,687,513
Ensembl chr 3:168,674,849...168,698,091 		JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:192455 RGD:5133256 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) RGD PMID:6301357 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) RGD PMID:5472365 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:7744869) RGD PMID:7744869 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:12849978) RGD PMID:12849978 NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417 		JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 involved_in ISO
IBA
ISS		 (PMID:24467396)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:24467396 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:181,877,440...181,880,833
Ensembl chr 1:181,877,437...181,880,839 		JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:192455 GO_REF:0000033, RGD:5133256 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183 		JBrowse link
G Dtymk deoxythymidylate kinase acts_upstream_of_or_within
involved_in		 IDA
ISO
IBA		 (PMID:8845311)
GO_REF:0000033
(PMID:12614151)		 RGD
GO_Central		 PMID:8845311 PMID:12614151 PMID:220041 GO_REF:0000033, RGD:5133687 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870 		JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase involved_in ISO (PMID:10952785), (PMID:15322254) RGD PMID:10952785 PMID:15322254 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (MGI:3849912|PMID:19513116) RGD PMID:19513116 MGI:3849912 NCBI chr10:45,468,698...45,490,833
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Tyms thymidylate synthetase involved_in IDA
ISO
IBA
IEA		 (PMID:22057276)
GO_REF:0000033
GO_REF:0000002
(PMID:11278511), (PMID:15093541), (PMID:8845352)		 RGD
GO_Central
InterPro		 PMID:8845352 PMID:11278511 PMID:15093541 PMID:22057276 PMID:9894005 GO_REF:0000002 GO_REF:0000033, RGD:1545055 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536 		JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) RGD PMID:6301357 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954 		JBrowse link
G Tymp thymidine phosphorylase involved_in ISO MGI:2183547 (PMID:12077348) RGD PMID:12077348 NCBI chr 7:120,438,768...120,444,088
Ensembl chr 7:120,438,770...120,443,874
Ensembl chr 7:120,438,770...120,443,874 		JBrowse link
G Upp1 uridine phosphorylase 1 NOT|involved_in ISO MGI:3699164 (MGI:3584214|PMID:15772079)
MGI:3699164 (PMID:12077348)		 RGD PMID:12077348 PMID:15772079 MGI:3584214 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:220041 GO_REF:0000033, RGD:5133687 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870 		JBrowse link
G Tbpl1 TATA-box binding protein like 1 acts_upstream_of_or_within ISO MGI:2182539 (PMID:11861477) RGD PMID:11861477 NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122
Ensembl chr 1:22,778,459...22,803,122 		JBrowse link
G Tyms thymidylate synthetase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536 		JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT|involved_in ISO (PMID:24467396) RGD PMID:24467396 NCBI chr 1:181,877,440...181,880,833
Ensembl chr 1:181,877,437...181,880,839 		JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:3010881 RGD:5133253 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:192455 GO_REF:0000033, RGD:5133256 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870 		JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IEA
IBA		 GO_REF:0000041
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 Ensembl chr 1:48,369,044...48,369,595 JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IBA
IEA		 GO_REF:0000033
GO_REF:0000041		 GO_Central
UniProt
RGD		 PMID:3032103 PMID:1315924 GO_REF:0000033 GO_REF:0000041, RGD:2300191, RGD:2301218 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771 		JBrowse link
G ENSRNOG00000069939 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 Ensembl chr13:67,763,505...67,765,634 JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) RGD PMID:10681516 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial acts_upstream_of_or_within ISO (PMID:12234672) RGD PMID:12234672 NCBI chr10:44,652,845...44,680,549
Ensembl chr10:44,652,975...44,679,150 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) RGD PMID:5472365 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:14154460) RGD PMID:14154460 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:48,369,044...48,369,595 JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:3032103 PMID:1315924 GO_REF:0000033, RGD:2300191, RGD:2301218 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771 		JBrowse link
G ENSRNOG00000069939 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr13:67,763,505...67,765,634 JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO
IBA		 (PMID:10681516)
GO_REF:0000033		 RGD
GO_Central		 PMID:10681516 GO_REF:0000033 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:44,652,845...44,680,549
Ensembl chr10:44,652,975...44,679,150 		JBrowse link
pyrimidine nucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IEA GO_REF:0000104
GO_REF:0000043		 UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 involved_in ISO (PMID:35772404) RGD PMID:35772404 NCBI chr15:10,585,307...10,664,780
Ensembl chr15:10,588,979...10,664,781 		JBrowse link
pyrimidine ribonucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:37,551,858...37,573,327
Ensembl chr19:37,558,177...37,591,654 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO (PMID:25678555) RGD PMID:25678555 NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IDA
IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:11912132)		 GO_Central
Ensembl
RGD		 PMID:11912132 PMID:3010881 GO_REF:0000033 GO_REF:0000107, RGD:5133253 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IEA
ISO		 GO_REF:0000107
(PMID:30449682), (PMID:6249586)		 Ensembl
RGD		 PMID:6249586 PMID:30449682 GO_REF:0000107 NCBI chr19:37,551,858...37,573,327
Ensembl chr19:37,558,177...37,591,654 		JBrowse link
G Umps uridine monophosphate synthetase involved_in ISO (PMID:2419341), (PMID:6154574) RGD PMID:2419341 PMID:6154574 NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903 		JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO
IBA		 (PMID:10858452), (PMID:9556635)
GO_REF:0000033		 RGD
GO_Central		 PMID:9556635 PMID:10858452 GO_REF:0000033 NCBI chr15:44,630,878...44,658,654
Ensembl chr15:44,630,873...44,658,706 		JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 involved_in ISS
ISO		 GO_REF:0000024
(MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248)		 UniProt
RGD		 PMID:10369669 PMID:21074248 GO_REF:0000024 MGI:1927266 MGI:4881347 NCBI chr 6:104,019,095...104,055,311
Ensembl chr 6:104,019,185...104,055,530 		JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck1 uridine-cytidine kinase 1 acts_upstream_of_or_within ISO (MGI:84399|PMID:8951040) RGD PMID:8951040 MGI:84399 NCBI chr 3:15,538,580...15,544,465
Ensembl chr 3:15,538,591...15,544,465 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IDA
IBA
ISO		 GO_REF:0000033
(PMID:11730338), (PMID:18184586), (PMID:6893554), (PMID:9042911)		 GO_Central
RGD		 PMID:6893554 PMID:9042911 PMID:11730338 PMID:18184586 PMID:6134725 GO_REF:0000033, RGD:5132277 NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903 		JBrowse link
G Uprt uracil phosphoribosyltransferase homolog IDA RGD PMID:1476792 RGD:5132591 NCBI chr  X:69,516,573...69,546,811
Ensembl chr  X:69,516,738...69,546,797 		JBrowse link
UMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) RGD PMID:10681516 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) RGD PMID:5472365 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:14715930), (PMID:7744869) RGD PMID:7744869 PMID:14715930 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:14715930) RGD PMID:14715930 NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417 		JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cda cytidine deaminase involved_in ISO (PMID:6498945) RGD PMID:6498945 NCBI chr 5:150,556,615...150,583,231
Ensembl chr 5:150,556,615...150,583,231 		JBrowse link
G Uck1 uridine-cytidine kinase 1 involved_in IEA
ISO		 GO_REF:0000041
(PMID:8951040)
(PMID:11306702)		 UniProt
RGD		 PMID:8951040 PMID:11306702 GO_REF:0000041 NCBI chr 3:15,538,580...15,544,465
Ensembl chr 3:15,538,591...15,544,465 		JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in IEA
ISO
ISS		 GO_REF:0000041
(PMID:11306702), (PMID:27239701)
GO_REF:0000024		 UniProt
RGD		 PMID:11306702 PMID:27239701 GO_REF:0000024 GO_REF:0000041 NCBI chr13:79,380,807...79,438,121
Ensembl chr13:79,383,846...79,438,352 		JBrowse link
G Uckl1 uridine-cytidine kinase 1-like 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:168,674,849...168,687,513
Ensembl chr 3:168,674,849...168,698,091 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in IEA
ISO		 GO_REF:0000041
(PMID:11956089)		 UniProt
RGD		 PMID:11956089 GO_REF:0000041 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417 		JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:10659854 GO_REF:0000033, RGD:2303528 NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861 		JBrowse link
G Decr2 2,4-dienoyl-CoA reductase 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,104,907...15,113,281
Ensembl chr10:15,002,926...15,118,479 		JBrowse link
G ENSRNOG00000062879 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr  X:36,618,074...36,618,881 JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:78,907,036...78,929,659
Ensembl chr10:78,906,083...78,916,408 		JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 involved_in IDA
IEA		 GO_REF:0000002 InterPro
RGD		 PMID:1316151 GO_REF:0000002, RGD:729254 NCBI chr10:78,898,097...78,903,514
Ensembl chr10:78,897,770...78,903,538 		JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:13,917,309...13,918,415
Ensembl chr10:13,917,403...13,918,359 		JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,114,624...15,118,479
Ensembl chr10:15,002,926...15,118,479 		JBrowse link
G Nme5 NME/NM23 family member 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:26,163,558...26,180,742
Ensembl chr18:26,163,555...26,180,794 		JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:109,832,085...109,839,301
Ensembl chr 8:109,832,589...109,839,301 		JBrowse link
G Nme7 NME/NM23 family member 7 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:76,657,303...76,786,768
Ensembl chr13:76,657,367...76,786,765 		JBrowse link
G Rab11fip3 RAB11 family interacting protein 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,002,650...15,086,382
Ensembl chr10:15,002,926...15,118,479 		JBrowse link
UTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO (PMID:11278936) RGD PMID:11278936 NCBI chr 1:242,559,365...242,601,044
Ensembl chr 1:242,559,365...242,601,447 		JBrowse link
UTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak3 adenylate kinase 3 involved_in ISO
IEA		 (PMID:11485571)
GO_REF:0000107		 RGD
Ensembl		 PMID:11485571 GO_REF:0000107 NCBI chr 1:226,737,472...226,764,647
Ensembl chr 1:226,739,318...226,764,625 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11455
      organonitrogen compound metabolic process 5663
        pyrimidine-containing compound metabolic process 75
          pyrimidine nucleotide metabolic process 47
            pyrimidine deoxyribonucleotide metabolic process + 18
            pyrimidine nucleotide biosynthetic process + 33
            pyrimidine nucleotide catabolic process + 16
            pyrimidine nucleotide interconversion + 0
            pyrimidine ribonucleotide metabolic process + 33
Path 2
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11455
      cellular metabolic process 9554
        phosphorus metabolic process 1877
          phosphate-containing compound metabolic process 1845
            nucleoside phosphate metabolic process 616
              nucleotide metabolic process 606
                pyrimidine nucleotide metabolic process 47
                  pyrimidine deoxyribonucleotide metabolic process + 18
                  pyrimidine nucleotide biosynthetic process + 33
                  pyrimidine nucleotide catabolic process + 16
                  pyrimidine nucleotide interconversion + 0
                  pyrimidine ribonucleotide metabolic process + 33
paths to the root