AABR07001512.1 (null) - Rat Genome Database

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Gene: AABR07001512.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07001512.1
Name:
RGD ID: 15003452
Description: Predicted to be involved in dUMP biosynthetic process.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl148,369,044 - 48,369,595 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl148,565,160 - 48,565,711 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:15
Count of miRNA genes:14
Interacting mature miRNAs:14
Transcripts:ENSRNOT00000023387
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 26 26 20 15 20 2 36 24 27 2
Low 1 15 31 21 3 21 8 8 37 10 14 8 8
Below cutoff 2 1 1 1 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000023387   ⟹   ENSRNOP00000023387
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl148,369,044 - 48,369,595 (-)Ensembl
Rnor_6.0 Ensembl148,565,160 - 48,565,711 (-)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000023387   ⟸   ENSRNOT00000023387
Protein Domains
dUTPase-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A6V3-F1-model_v2 AlphaFold D4A6V3 1-177 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000017412 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000023387.3 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023387.4 UniProtKB/TrEMBL
Gene3D-CATH 2.70.40.10 UniProtKB/TrEMBL
InterPro dUTPase-like UniProtKB/TrEMBL
  dUTPase-like_sf UniProtKB/TrEMBL
  dUTPase_1 UniProtKB/TrEMBL
  dUTPase_trimeric UniProtKB/TrEMBL
PANTHER DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE UniProtKB/TrEMBL
  PTHR11241 UniProtKB/TrEMBL
Pfam dUTPase UniProtKB/TrEMBL
PhenoGen AABR07001512.1 PhenoGen
Superfamily-SCOP SSF51283 UniProtKB/TrEMBL
TIGRFAMs dut UniProtKB/TrEMBL
UniProt D4A6V3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07001512.1        Symbol and Name status set to provisional 45752 PROVISIONAL