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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine-containing compound metabolic process
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Accession:GO:0072527 term browser browse the term
Definition:The chemical reactions and pathways involving a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof.
Synonyms:exact_synonym: pyrimidine and derivative metabolic process;   pyrimidine-containing compound metabolism


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'de novo' CTP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctps1 CTP synthase 1 JBrowse link 5 139,475,934 139,505,065 RGD:1600115
G Ctps2 CTP synthase 2 JBrowse link X 33,383,087 33,522,852 RGD:1600115
'de novo' pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase JBrowse link 6 26,657,507 26,680,459 RGD:5132591
RGD:13792537
RGD:1624291
G Cmpk1 cytidine/uridine monophosphate kinase 1 JBrowse link 5 133,759,722 133,786,452 RGD:1600115
G Cps1 carbamoyl-phosphate synthase 1 JBrowse link 9 74,113,437 74,236,274 RGD:1600115
G Dhodh dihydroorotate dehydrogenase (quinone) JBrowse link 19 42,066,103 42,087,906 RGD:5132591
RGD:13792537
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:1624291
G Umps uridine monophosphate synthetase JBrowse link 11 70,034,181 70,044,590 RGD:1600115
'de novo' UMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhodh dihydroorotate dehydrogenase (quinone) JBrowse link 19 42,066,103 42,087,906 RGD:1600115
G Umps uridine monophosphate synthetase JBrowse link 11 70,034,181 70,044,590 RGD:1600115
5-methylcytosine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tet1 tet methylcytosine dioxygenase 1 JBrowse link 20 27,359,122 27,438,039 RGD:13792537
G Tet2 tet methylcytosine dioxygenase 2 JBrowse link 2 238,719,389 238,802,975 RGD:1624291
RGD:13792537
G Tet3 tet methylcytosine dioxygenase 3 JBrowse link 4 115,060,702 115,160,800 RGD:13792537
5-methylcytosine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tet2 tet methylcytosine dioxygenase 2 JBrowse link 2 238,719,389 238,802,975 RGD:1624291
CDP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmpk1 cytidine/uridine monophosphate kinase 1 JBrowse link 5 133,759,722 133,786,452 RGD:5133253
CDP-diacylglycerol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agpat4 1-acylglycerol-3-phosphate O-acyltransferase 4 JBrowse link 1 48,716,094 48,826,292 RGD:1600115
G Cds1 CDP-diacylglycerol synthase 1 JBrowse link 14 9,396,511 9,456,964 RGD:1600115
RGD:1624291
G Cds2 CDP-diacylglycerol synthase 2 JBrowse link 3 124,896,657 124,935,221 RGD:1600115
RGD:1624291
G Gpam glycerol-3-phosphate acyltransferase, mitochondrial JBrowse link 1 275,843,823 275,906,880 RGD:1600115
G Gpat3 glycerol-3-phosphate acyltransferase 3 JBrowse link 14 10,343,287 10,396,565 RGD:1600115
G Tamm41 TAM41 mitochondrial translocator assembly and maintenance homolog JBrowse link 4 146,922,085 146,954,159 RGD:1600115
CDP-diacylglycerol metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdipt CDP-diacylglycerol--inositol 3-phosphatidyltransferase JBrowse link 1 198,409,186 198,413,497 RGD:1626301
CTP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctps1 CTP synthase 1 JBrowse link 5 139,475,934 139,505,065 RGD:1624291
RGD:13792537
G Ctps2 CTP synthase 2 JBrowse link X 33,383,087 33,522,852 RGD:13792537
G Decr2 2,4-dienoyl-CoA reductase 2 JBrowse link 10 15,451,850 15,460,227 RGD:1600115
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 JBrowse link 10 81,657,152 81,666,542 RGD:1600115
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 JBrowse link 10 81,648,216 81,653,717 RGD:729254
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 JBrowse link 10 14,258,232 14,259,365 RGD:1600115
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 JBrowse link 10 15,461,567 15,465,422 RGD:1600115
G Nme5 NME/NM23 family member 5 JBrowse link 18 27,357,460 27,374,641 RGD:1600115
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 JBrowse link 8 117,920,912 117,928,148 RGD:1600115
G Nme7 NME/NM23 family member 7 JBrowse link 13 82,607,844 82,737,383 RGD:1600115
CTP salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Uck1 uridine-cytidine kinase 1 JBrowse link 3 11,271,874 11,277,757 RGD:1600115
G Uck2 uridine-cytidine kinase 2 JBrowse link 13 85,376,716 85,443,976 RGD:1600115
G Uckl1 uridine-cytidine kinase 1-like 1 JBrowse link 3 177,066,022 177,078,611 RGD:1600115
cytidine deamination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aicda activation-induced cytidine deaminase JBrowse link 4 155,359,909 155,371,104 RGD:1624291
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:1600115
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 JBrowse link 9 14,529,218 14,542,731 RGD:1600115
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 JBrowse link 7 121,108,108 121,128,346 RGD:1600115
G Cda cytidine deaminase JBrowse link 5 156,703,579 156,734,541 RGD:2316616
RGD:13792537
RGD:1624291
G Cdadc1 cytidine and dCMP deaminase domain containing 1 JBrowse link 15 39,865,094 39,894,122 RGD:1624291
G LOC100909857 cytidine deaminase-like JBrowse link 5 156,756,678 156,781,306 RGD:13792537
cytidine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:8553657
cytosine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:1624291
G Tet2 tet methylcytosine dioxygenase 2 JBrowse link 2 238,719,389 238,802,975 RGD:1624291
dCDP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmpk1 cytidine/uridine monophosphate kinase 1 JBrowse link 5 133,759,722 133,786,452 RGD:5133256
dCTP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dctpp1 dCTP pyrophosphatase 1 JBrowse link 1 198,703,459 198,706,852 RGD:1624291
RGD:13792537
RGD:1600115
deoxycytidine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dck deoxycytidine kinase JBrowse link 14 20,935,442 20,952,939 RGD:2300395
RGD:2300399
RGD:2300398
G Tk2 thymidine kinase 2 JBrowse link 19 917,203 939,236 RGD:5134349
dTDP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmpk2 cytidine/uridine monophosphate kinase 2 JBrowse link 6 45,683,242 45,694,824 RGD:5133256
RGD:13792537
G Dtymk deoxythymidylate kinase JBrowse link 9 100,921,565 100,930,399 RGD:5133687
RGD:13792537
RGD:1624291
dTMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdadc1 cytidine and dCMP deaminase domain containing 1 JBrowse link 15 39,865,094 39,894,122 RGD:13792537
G Dctd dCMP deaminase JBrowse link 16 47,177,144 47,222,850 RGD:13792537
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link 10 47,030,813 47,059,216 RGD:1624291
G Tyms thymidylate synthetase JBrowse link 9 121,918,875 121,931,564 RGD:1545055
RGD:13792537
RGD:1624291
dTTP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmpk2 cytidine/uridine monophosphate kinase 2 JBrowse link 6 45,683,242 45,694,824 RGD:13792537
G Dtymk deoxythymidylate kinase JBrowse link 9 100,921,565 100,930,399 RGD:5133687
RGD:13792537
G Tbpl1 TATA-box binding protein like 1 JBrowse link 1 23,977,154 24,002,512 RGD:1624291
G Tyms thymidylate synthetase JBrowse link 9 121,918,875 121,931,564 RGD:1600115
dTTP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dctpp1 dCTP pyrophosphatase 1 JBrowse link 1 198,703,459 198,706,852 RGD:1624291
dUDP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmpk1 cytidine/uridine monophosphate kinase 1 JBrowse link 5 133,759,722 133,786,452 RGD:5133253
G Cmpk2 cytidine/uridine monophosphate kinase 2 JBrowse link 6 45,683,242 45,694,824 RGD:5133256
RGD:13792537
G Dtymk deoxythymidylate kinase JBrowse link 9 100,921,565 100,930,399 RGD:13792537
dUMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07001512.1 RGD:13792537
G Cdadc1 cytidine and dCMP deaminase domain containing 1 JBrowse link 15 39,865,094 39,894,122 RGD:13792537
G Dctd dCMP deaminase JBrowse link 16 47,177,144 47,222,850 RGD:13792537
G Dut deoxyuridine triphosphatase JBrowse link 3 117,514,399 117,525,450 RGD:2300191
RGD:13792537
RGD:1600115
RGD:2301218
dUMP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nt5m 5',3'-nucleotidase, mitochondrial JBrowse link 10 46,216,494 46,244,478 RGD:1624291
dUMP metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tyms thymidylate synthetase JBrowse link 9 121,918,875 121,931,564 RGD:1545055
dUTP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07001512.1 RGD:13792537
G Dut deoxyuridine triphosphatase JBrowse link 3 117,514,399 117,525,450 RGD:2300191
RGD:13792537
RGD:2301218
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nt5c 5', 3'-nucleotidase, cytosolic JBrowse link 10 104,052,807 104,054,805 RGD:1624291
pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctps1 CTP synthase 1 JBrowse link 5 139,475,934 139,505,065 RGD:13792537
G Ctps2 CTP synthase 2 JBrowse link X 33,383,087 33,522,852 RGD:13792537
G Umps uridine monophosphate synthetase JBrowse link 11 70,034,181 70,044,590 RGD:13792537
pyrimidine nucleobase catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crmp1 collapsin response mediator protein 1 JBrowse link 14 78,266,931 78,312,777 RGD:13792537
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 2 221,823,692 222,694,627 RGD:1599794
RGD:1624291
G Dpys dihydropyrimidinase JBrowse link 7 78,769,918 78,847,941 RGD:1624291
RGD:13792537
G Dpysl2 dihydropyrimidinase-like 2 JBrowse link 15 43,475,640 43,581,725 RGD:13792537
G Dpysl3 dihydropyrimidinase-like 3 JBrowse link 18 37,716,371 37,819,347 RGD:13792537
G Dpysl4 dihydropyrimidinase-like 4 JBrowse link 1 211,423,022 211,438,533 RGD:13792537
G Dpysl5 dihydropyrimidinase-like 5 JBrowse link 6 26,939,696 27,024,129 RGD:13792537
G LOC103692570 dihydropyrimidinase-related protein 5-like JBrowse link 6 26,423,841 26,446,080 RGD:13792537
pyrimidine nucleobase metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rrm1 ribonucleotide reductase catalytic subunit M1 JBrowse link 1 167,538,387 167,562,688 RGD:5133695
G Rrm2 ribonucleotide reductase regulatory subunit M2 JBrowse link 6 43,884,627 43,890,818 RGD:5133695
G Tymp thymidine phosphorylase JBrowse link 7 130,342,481 130,347,845 RGD:1600115
G Tyms thymidylate synthetase JBrowse link 9 121,918,875 121,931,564 RGD:5133447
pyrimidine nucleoside catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Upb1 beta-ureidopropionase 1 JBrowse link 20 14,167,383 14,193,724 RGD:1600115
RGD:1624291
pyrimidine nucleoside metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tymp thymidine phosphorylase JBrowse link 7 130,342,481 130,347,845 RGD:1624291
pyrimidine nucleotide biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmpk1 cytidine/uridine monophosphate kinase 1 JBrowse link 5 133,759,722 133,786,452 RGD:1600115
pyrimidine nucleotide metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dck deoxycytidine kinase JBrowse link 14 20,935,442 20,952,939 RGD:1600115
RGD:1624291
G Dctd dCMP deaminase JBrowse link 16 47,177,144 47,222,850 RGD:1600115
G Enpp3 ectonucleotide pyrophosphatase/phosphodiesterase 3 JBrowse link 1 21,613,148 21,684,483 RGD:1600115
RGD:1624291
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 JBrowse link 10 81,657,152 81,666,542 RGD:13792537
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 JBrowse link 10 81,648,216 81,653,717 RGD:13792537
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 JBrowse link 10 14,258,232 14,259,365 RGD:13792537
G Upp1 uridine phosphorylase 1 JBrowse link 14 89,314,234 89,334,060 RGD:1624291
pyrimidine ribonucleotide biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhodh dihydroorotate dehydrogenase (quinone) JBrowse link 19 42,066,103 42,087,906 RGD:13792537
thiamine diphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tpk1 thiamin pyrophosphokinase 1 JBrowse link 4 72,792,252 73,174,179 RGD:1600115
RGD:13792537
thiamine diphosphate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Thtpa thiamine triphosphatase JBrowse link 15 33,755,157 33,759,117 RGD:1600115
RGD:13792537
RGD:1624291
thiamine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acp3 acid phosphatase 3 JBrowse link 8 112,838,574 112,884,062 RGD:1600115
RGD:1624291
G Thtpa thiamine triphosphatase JBrowse link 15 33,755,157 33,759,117 RGD:1600115
G Tpk1 thiamin pyrophosphokinase 1 JBrowse link 4 72,792,252 73,174,179 RGD:1624291
thymidine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 2 221,823,692 222,694,627 RGD:1624291
RGD:1600115
thymidine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tk1 thymidine kinase 1 JBrowse link 10 106,817,556 106,828,888 RGD:2317232
RGD:13792537
G Tk2 thymidine kinase 2 JBrowse link 19 917,203 939,236 RGD:5134349
thymine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh6a1 aldehyde dehydrogenase 6 family, member A1 JBrowse link 6 108,146,552 108,167,185 RGD:1599052
RGD:13792537
RGD:1600115
RGD:1624291
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 2 221,823,692 222,694,627 RGD:1624291
RGD:1600115
RGD:13792537
G Dpys dihydropyrimidinase JBrowse link 7 78,769,918 78,847,941 RGD:1624990
thymine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh6a1 aldehyde dehydrogenase 6 family, member A1 JBrowse link 6 108,146,552 108,167,185 RGD:1599052
UDP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmpk1 cytidine/uridine monophosphate kinase 1 JBrowse link 5 133,759,722 133,786,452 RGD:5133253
UDP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 JBrowse link 15 51,222,954 51,250,787 RGD:1624291
UMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Umps uridine monophosphate synthetase JBrowse link 11 70,034,181 70,044,590 RGD:5132277
RGD:13792537
RGD:1624291
G Uprt uracil phosphoribosyltransferase homolog JBrowse link X 75,382,553 75,408,541 RGD:5132591
UMP salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Uck1 uridine-cytidine kinase 1 JBrowse link 3 11,271,874 11,277,757 RGD:1600115
G Uck2 uridine-cytidine kinase 2 JBrowse link 13 85,376,716 85,443,976 RGD:1600115
G Uckl1 uridine-cytidine kinase 1-like 1 JBrowse link 3 177,066,022 177,078,611 RGD:1600115
G Upp1 uridine phosphorylase 1 JBrowse link 14 89,314,234 89,334,060 RGD:1600115
G Upp2 uridine phosphorylase 2 JBrowse link 3 44,806,106 44,846,464 RGD:1600115
uracil catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 2 221,823,692 222,694,627 RGD:1600115
RGD:13792537
RGD:1624291
G Dpys dihydropyrimidinase JBrowse link 7 78,769,918 78,847,941 RGD:1624990
RGD:1624291
uracil metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 2 221,823,692 222,694,627 RGD:1624989
G Dpys dihydropyrimidinase JBrowse link 7 78,769,918 78,847,941 RGD:1624989
RGD:1624990
G Tyms thymidylate synthetase JBrowse link 9 121,918,875 121,931,564 RGD:5133426
uridine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Upp1 uridine phosphorylase 1 JBrowse link 14 89,314,234 89,334,060 RGD:1624291
G Upp2 uridine phosphorylase 2 JBrowse link 3 44,806,106 44,846,464 RGD:1624291
uridine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Upp1 uridine phosphorylase 1 JBrowse link 14 89,314,234 89,334,060 RGD:1624291
UTP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase JBrowse link 6 26,657,507 26,680,459 RGD:2303528
RGD:13792537
G Decr2 2,4-dienoyl-CoA reductase 2 JBrowse link 10 15,451,850 15,460,227 RGD:1600115
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 JBrowse link 10 81,657,152 81,666,542 RGD:1600115
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 JBrowse link 10 81,648,216 81,653,717 RGD:729254
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 JBrowse link 10 14,258,232 14,259,365 RGD:1600115
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 JBrowse link 10 15,461,567 15,465,422 RGD:1600115
G Nme5 NME/NM23 family member 5 JBrowse link 18 27,357,460 27,374,641 RGD:1600115
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 JBrowse link 8 117,920,912 117,928,148 RGD:1600115
G Nme7 NME/NM23 family member 7 JBrowse link 13 82,607,844 82,737,383 RGD:1600115
UTP metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak3 adenylate kinase 3 JBrowse link 1 247,144,486 247,169,690 RGD:1624291
RGD:1600115

Term paths to the root
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Term Annotations click to browse term
  biological_process 19439
    metabolic process 11638
      nitrogen compound metabolic process 9952
        cellular nitrogen compound metabolic process 6377
          pyrimidine-containing compound metabolic process 73
            5-methylcytosine metabolic process + 3
            orotic acid metabolic process 0
            pyrimidine nucleobase metabolic process + 23
            pyrimidine nucleoside metabolic process + 15
            pyrimidine nucleotide metabolic process + 43
            pyrimidine-containing compound biosynthetic process + 38
            pyrimidine-containing compound catabolic process + 28
            thiamine diphosphate metabolic process + 2
            thiamine-containing compound metabolic process + 3
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.