Uckl1 (uridine-cytidine kinase 1-like 1) - Rat Genome Database

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Gene: Uckl1 (uridine-cytidine kinase 1-like 1) Rattus norvegicus
Analyze
Symbol: Uckl1
Name: uridine-cytidine kinase 1-like 1
RGD ID: 1565465
Description: Predicted to enable ATP binding activity and uridine kinase activity. Predicted to be involved in CTP salvage; UMP salvage; and phosphorylation. Predicted to be active in cytoplasm. Orthologous to human UCKL1 (uridine-cytidine kinase 1 like 1); PARTICIPATES IN beta-ureidopropionase deficiency pathway; dihydropyrimidinase deficiency pathway; mitochondrial neurogastrointestinal encephalopathy syndrome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; azoxystrobin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC499956; RGD1565465; similar to Uridine-cytidine kinase 1-like 1; uridine-cytidine kinase-like 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23168,674,849 - 168,687,513 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,674,849 - 168,698,091 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3173,054,030 - 173,066,604 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03182,013,124 - 182,025,698 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03178,675,774 - 178,688,348 (-)NCBIRnor_WKY
Rnor_6.03177,066,022 - 177,078,611 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3177,066,014 - 177,078,594 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,775,487 - 180,788,073 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,707,803 - 170,720,880 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3163,900,156 - 163,912,730 (+)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Uckl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23168,674,849 - 168,687,513 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,674,849 - 168,698,091 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3173,054,030 - 173,066,604 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03182,013,124 - 182,025,698 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03178,675,774 - 178,688,348 (-)NCBIRnor_WKY
Rnor_6.03177,066,022 - 177,078,611 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3177,066,014 - 177,078,594 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,775,487 - 180,788,073 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,707,803 - 170,720,880 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3163,900,156 - 163,912,730 (+)NCBICelera
Cytogenetic Map3q43NCBI
UCKL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,939,829 - 63,956,416 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2063,939,829 - 63,956,416 (-)EnsemblGRCh38hg38GRCh38
GRCh372062,571,182 - 62,587,769 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362062,041,630 - 62,058,212 (-)NCBINCBI36Build 36hg18NCBI36
Build 342062,041,634 - 62,058,212NCBI
Celera2059,255,043 - 59,274,434 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2059,304,567 - 59,323,105 (-)NCBIHuRef
CHM1_12062,471,794 - 62,488,226 (-)NCBICHM1_1
T2T-CHM13v2.02065,759,678 - 65,777,377 (-)NCBIT2T-CHM13v2.0
Uckl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392181,210,942 - 181,223,820 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2181,210,942 - 181,226,685 (-)EnsemblGRCm39 Ensembl
GRCm382181,569,149 - 181,582,027 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2181,569,149 - 181,584,892 (-)EnsemblGRCm38mm10GRCm38
MGSCv372181,303,857 - 181,316,678 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362181,498,559 - 181,511,380 (-)NCBIMGSCv36mm8
Celera2185,650,746 - 185,663,572 (-)NCBICelera
Cytogenetic Map2H4NCBI
Uckl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528297,952 - 311,306 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955528297,952 - 311,306 (+)NCBIChiLan1.0ChiLan1.0
UCKL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12061,860,084 - 61,876,202 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,860,084 - 61,876,194 (-)Ensemblpanpan1.1panPan2
UCKL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12447,412,520 - 47,423,222 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2447,412,521 - 47,432,860 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,545,991 - 46,557,047 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02448,551,585 - 48,562,625 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2448,551,592 - 48,562,625 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12447,395,875 - 47,406,868 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02447,520,665 - 47,531,762 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02448,259,048 - 48,269,306 (-)NCBIUU_Cfam_GSD_1.0
Uckl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,690,998 - 195,702,853 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651411,144,026 - 11,156,455 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493651411,144,641 - 11,156,470 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UCKL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,785,422 - 62,796,378 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,785,419 - 62,796,396 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UCKL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12282,267 - 299,148 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2282,365 - 299,099 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605047,812,703 - 47,832,460 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uckl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474129,566,007 - 29,581,895 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474129,568,980 - 29,581,923 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Uckl1
17 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:97
Count of miRNA genes:81
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000020695
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat

Markers in Region
RH139487  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23168,674,979 - 168,675,259 (+)MAPPERmRatBN7.2
Rnor_6.03177,066,168 - 177,066,447NCBIRnor6.0
Rnor_5.03180,775,618 - 180,775,897UniSTSRnor5.0
RGSC_v3.43170,707,934 - 170,708,213UniSTSRGSC3.4
Celera3163,912,320 - 163,912,599UniSTS
RH 3.4 Map31551.9UniSTS
Cytogenetic Map3q43UniSTS
MARC_26200-26201:1030734098:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23168,678,922 - 168,679,877 (+)MAPPERmRatBN7.2
Rnor_6.03177,070,111 - 177,071,065NCBIRnor6.0
Rnor_5.03180,779,561 - 180,780,515UniSTSRnor5.0
RGSC_v3.43170,711,877 - 170,712,831UniSTSRGSC3.4
Celera3163,907,702 - 163,908,656UniSTS
Cytogenetic Map3q43UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 28 12 19 12 8 11 74 35 40 11 8
Low 8 29 29 29 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000020695   ⟹   ENSRNOP00000020695
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3168,674,855 - 168,687,407 (-)Ensembl
Rnor_6.0 Ensembl3177,066,014 - 177,078,594 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099097   ⟹   ENSRNOP00000083311
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3168,674,849 - 168,684,944 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106927   ⟹   ENSRNOP00000078158
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3168,674,849 - 168,698,091 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108112   ⟹   ENSRNOP00000092533
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3168,674,855 - 168,686,613 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112230   ⟹   ENSRNOP00000084349
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3168,674,849 - 168,687,423 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113118   ⟹   ENSRNOP00000093317
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3168,674,849 - 168,698,091 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113965   ⟹   ENSRNOP00000094809
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3168,674,869 - 168,687,397 (-)Ensembl
RefSeq Acc Id: NM_001109212   ⟹   NP_001102682
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,674,849 - 168,687,423 (-)NCBI
Rnor_6.03177,066,037 - 177,078,611 (-)NCBI
Rnor_5.03180,775,487 - 180,788,073 (-)NCBI
RGSC_v3.43170,707,803 - 170,720,880 (-)RGD
Celera3163,900,156 - 163,912,730 (+)RGD
Sequence:
RefSeq Acc Id: XM_006235793   ⟹   XP_006235855
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,674,852 - 168,686,481 (-)NCBI
Rnor_6.03177,066,022 - 177,077,679 (-)NCBI
Rnor_5.03180,775,487 - 180,788,073 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235794   ⟹   XP_006235856
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,674,852 - 168,686,484 (-)NCBI
Rnor_6.03177,066,022 - 177,077,679 (-)NCBI
Rnor_5.03180,775,487 - 180,788,073 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235795   ⟹   XP_006235857
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,674,852 - 168,686,485 (-)NCBI
Rnor_6.03177,066,022 - 177,077,679 (-)NCBI
Rnor_5.03180,775,487 - 180,788,073 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235796   ⟹   XP_006235858
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,674,852 - 168,687,244 (-)NCBI
Rnor_6.03177,066,022 - 177,078,452 (-)NCBI
Rnor_5.03180,775,487 - 180,788,073 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105713   ⟹   XP_038961641
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,674,852 - 168,687,453 (-)NCBI
RefSeq Acc Id: XM_039105714   ⟹   XP_038961642
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,674,852 - 168,687,463 (-)NCBI
RefSeq Acc Id: XM_039105715   ⟹   XP_038961643
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,674,852 - 168,687,457 (-)NCBI
RefSeq Acc Id: XM_039105717   ⟹   XP_038961645
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,674,852 - 168,686,484 (-)NCBI
RefSeq Acc Id: XM_039105718   ⟹   XP_038961646
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,676,001 - 168,687,513 (-)NCBI
RefSeq Acc Id: XM_039105719   ⟹   XP_038961647
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,676,001 - 168,687,480 (-)NCBI
RefSeq Acc Id: XR_005501969
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,674,852 - 168,687,513 (-)NCBI
RefSeq Acc Id: XR_005501970
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,674,852 - 168,687,476 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001102682   ⟸   NM_001109212
- UniProtKB: D3ZYQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235858   ⟸   XM_006235796
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006235857   ⟸   XM_006235795
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006235855   ⟸   XM_006235793
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AIR8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235856   ⟸   XM_006235794
- Peptide Label: isoform X5
- UniProtKB: A0A8I5Y757 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000020695   ⟸   ENSRNOT00000020695
RefSeq Acc Id: XP_038961642   ⟸   XM_039105714
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038961643   ⟸   XM_039105715
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038961641   ⟸   XM_039105713
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GA89 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961645   ⟸   XM_039105717
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038961646   ⟸   XM_039105718
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038961647   ⟸   XM_039105719
- Peptide Label: isoform X10
RefSeq Acc Id: ENSRNOP00000092533   ⟸   ENSRNOT00000108112
RefSeq Acc Id: ENSRNOP00000084349   ⟸   ENSRNOT00000112230
RefSeq Acc Id: ENSRNOP00000093317   ⟸   ENSRNOT00000113118
RefSeq Acc Id: ENSRNOP00000083311   ⟸   ENSRNOT00000099097
RefSeq Acc Id: ENSRNOP00000078158   ⟸   ENSRNOT00000106927
RefSeq Acc Id: ENSRNOP00000094809   ⟸   ENSRNOT00000113965
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZYQ8-F1-model_v2 AlphaFold D3ZYQ8 1-548 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692759
Promoter ID:EPDNEW_R3282
Type:multiple initiation site
Name:Uckl1_1
Description:uridine-cytidine kinase 1-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03177,078,585 - 177,078,645EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565465 AgrOrtholog
BioCyc Gene G2FUF-46273 BioCyc
Ensembl Genes ENSRNOG00000050277 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000020695 ENTREZGENE
  ENSRNOP00000020695.5 UniProtKB/TrEMBL
  ENSRNOP00000078158 ENTREZGENE
  ENSRNOP00000078158.1 UniProtKB/TrEMBL
  ENSRNOP00000083311.1 UniProtKB/TrEMBL
  ENSRNOP00000084349 ENTREZGENE
  ENSRNOP00000084349.1 UniProtKB/TrEMBL
  ENSRNOP00000092533 ENTREZGENE
  ENSRNOP00000092533.1 UniProtKB/TrEMBL
  ENSRNOP00000093317 ENTREZGENE
  ENSRNOP00000093317.1 UniProtKB/TrEMBL
  ENSRNOP00000094809.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020695 ENTREZGENE
  ENSRNOT00000020695.7 UniProtKB/TrEMBL
  ENSRNOT00000099097.1 UniProtKB/TrEMBL
  ENSRNOT00000106927 ENTREZGENE
  ENSRNOT00000106927.1 UniProtKB/TrEMBL
  ENSRNOT00000108112 ENTREZGENE
  ENSRNOT00000108112.1 UniProtKB/TrEMBL
  ENSRNOT00000112230 ENTREZGENE
  ENSRNOT00000112230.1 UniProtKB/TrEMBL
  ENSRNOT00000113118 ENTREZGENE
  ENSRNOT00000113118.1 UniProtKB/TrEMBL
  ENSRNOT00000113965.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.2020 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  PRibTrfase_dom UniProtKB/TrEMBL
  PRK/URK UniProtKB/TrEMBL
  PRTase-like UniProtKB/TrEMBL
  Uridine_kinase UniProtKB/TrEMBL
KEGG Report rno:499956 UniProtKB/TrEMBL
NCBI Gene 499956 ENTREZGENE
PANTHER PTHR10285:SF68 UniProtKB/TrEMBL
  URIDINE KINASE UniProtKB/TrEMBL
Pfam PRK UniProtKB/TrEMBL
  UPRTase UniProtKB/TrEMBL
PhenoGen Uckl1 PhenoGen
PRINTS URIDINKINASE UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF53271 UniProtKB/TrEMBL
TIGRFAMs udk UniProtKB/TrEMBL
UniProt A0A8I5Y757 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVU1_RAT UniProtKB/TrEMBL
  A0A8I6AIR8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AMB1_RAT UniProtKB/TrEMBL
  A0A8I6GA89 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GJU6_RAT UniProtKB/TrEMBL
  D3ZYQ8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Uckl1  uridine-cytidine kinase 1-like 1  RGD1565465_predicted  similar to Uridine-cytidine kinase 1-like 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565465_predicted  similar to Uridine-cytidine kinase 1-like 1 (predicted)  LOC499956  similar to Uridine-cytidine kinase 1-like 1  Symbol and Name status set to approved 1299863 APPROVED