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ONTOLOGY REPORT - ANNOTATIONS

Term:UMP biosynthetic process
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Accession:GO:0006222 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate.
Synonyms:exact_synonym: UMP anabolism;   UMP biosynthesis;   UMP formation;   UMP synthesis


show annotations for term's descendants           Sort by:
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck1 uridine-cytidine kinase 1 acts_upstream_of_or_within ISO (MGI:84399|PMID:8951040) RGD PMID:8951040 MGI:84399 NCBI chr 3:15,538,580...15,544,465
Ensembl chr 3:15,538,591...15,544,465 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IDA
IBA
ISO		 PMID:21873635
(PMID:11730338), (PMID:18184586), (PMID:6893554), (PMID:9042911)		 RGD PMID:6893554 PMID:9042911 PMID:11730338 PMID:18184586 PMID:6134725 More... RGD:5132277, RGD:13792537 NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903 		JBrowse link
G Uprt uracil phosphoribosyltransferase homolog IDA RGD PMID:1476792 RGD:5132591 NCBI chr  X:69,516,573...69,546,811
Ensembl chr  X:69,516,738...69,546,797 		JBrowse link
'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA
ISO		 GO_REF:0000041
(PMID:25678555)
(MGI:6719158|PMID:33771897)		 UniProt
RGD		 PMID:25678555 PMID:33771897 GO_REF:0000041 MGI:6719158 NCBI chr 6:25,292,133...25,315,176
Ensembl chr 6:25,292,133...25,319,861 		JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IEA
ISO		 GO_REF:0000041
(MGI:6282496|PMID:30449682), (MGI:6720231|PMID:6249586)		 UniProt
RGD		 PMID:6249586 PMID:30449682 GO_REF:0000041 MGI:6282496 MGI:6720231 NCBI chr19:37,551,858...37,573,327
Ensembl chr19:37,558,177...37,591,654 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IEA
ISO		 GO_REF:0000041
(MGI:1289111|PMID:2419341), (MGI:6720230|PMID:6154574)		 UniProt
RGD		 PMID:2419341 PMID:6154574 GO_REF:0000041 MGI:1289111 MGI:6720230 NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903 		JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cda cytidine deaminase involved_in ISO (MGI:6720232|PMID:6498945) RGD PMID:6498945 MGI:6720232 NCBI chr 5:150,556,615...150,583,231
Ensembl chr 5:150,556,615...150,583,231 		JBrowse link
G Uck1 uridine-cytidine kinase 1 involved_in IEA
ISO		 GO_REF:0000041
(MGI:84399|PMID:8951040)
(PMID:11306702)		 UniProt
RGD		 PMID:8951040 PMID:11306702 GO_REF:0000041 MGI:84399 NCBI chr 3:15,538,580...15,544,465
Ensembl chr 3:15,538,591...15,544,465 		JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in IEA
ISS
ISO		 GO_REF:0000041
GO_REF:0000024
(PMID:11306702), (PMID:27239701)		 UniProt
RGD		 PMID:11306702 PMID:27239701 GO_REF:0000024 GO_REF:0000041 NCBI chr13:79,380,807...79,438,352
Ensembl chr13:79,383,846...79,438,352 		JBrowse link
G Uckl1 uridine-cytidine kinase 1-like 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:168,674,849...168,687,513
Ensembl chr 3:168,674,849...168,698,091 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO
IEA		 (MGI:3586453|PMID:11956089)
GO_REF:0000041		 RGD
UniProt		 PMID:11956089 GO_REF:0000041 MGI:3586453 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19746
    metabolic process 12044
      nitrogen compound metabolic process 10201
        cellular nitrogen compound metabolic process 6643
          pyrimidine-containing compound metabolic process 71
            pyrimidine nucleotide metabolic process 48
              pyrimidine nucleotide biosynthetic process 34
                pyrimidine ribonucleotide biosynthetic process 25
                  UMP biosynthetic process 10
                    'de novo' UMP biosynthetic process 3
                    UMP salvage 6
Path 2
Term Annotations click to browse term
  biological_process 19746
    metabolic process 12044
      cellular metabolic process 9531
        cellular aromatic compound metabolic process 5843
          nucleobase-containing compound metabolic process 5616
            nucleobase-containing small molecule metabolic process 569
              nucleoside phosphate metabolic process 497
                nucleoside monophosphate metabolic process 85
                  pyrimidine nucleoside monophosphate metabolic process 23
                    pyrimidine ribonucleoside monophosphate metabolic process 16
                      UMP metabolic process 14
                        UMP biosynthetic process 10
                          'de novo' UMP biosynthetic process 3
                          UMP salvage 6
paths to the root