Dck (deoxycytidine kinase) - Rat Genome Database

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Gene: Dck (deoxycytidine kinase) Rattus norvegicus
Analyze
Symbol: Dck
Name: deoxycytidine kinase
RGD ID: 620667
Description: Enables deoxycytidine kinase activity; heterocyclic compound binding activity; and magnesium ion binding activity. Involved in deoxycytidine metabolic process. Predicted to be located in nucleoplasm. Predicted to be active in mitochondrion. Orthologous to human DCK (deoxycytidine kinase); PARTICIPATES IN gemcitabine pharmacodynamics pathway; gemcitabine pharmacokinetics pathway; lamivudine pharmacokinetics pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: deoxyadenosine kinase; deoxyguanosine kinase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81419,589,298 - 19,610,326 (-)NCBIGRCr8
mRatBN7.21419,305,218 - 19,326,247 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1419,305,218 - 19,326,247 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1419,294,940 - 19,315,959 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01420,613,805 - 20,634,822 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01419,316,197 - 19,337,208 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01420,935,442 - 20,952,939 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1420,935,369 - 20,953,095 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01420,845,716 - 20,863,008 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41420,886,700 - 20,904,305 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11420,886,695 - 20,904,305 (-)NCBI
Celera1418,648,191 - 18,665,287 (-)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 127 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DckRat1,1-dichloroethene increases expressionISORGD:15523526480464vinylidene chloride results in increased expression of DCK mRNACTDPMID:26682919
DckRat1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene multiple interactionsISORGD:15523526480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
DckRat1,2-dichloroethane decreases expressionISORGD:15523526480464ethylene dichloride results in decreased expression of DCK mRNACTDPMID:28960355
DckRat1,2-dimethylhydrazine decreases expressionISORGD:155235264804641,2-Dimethylhydrazine results in decreased expression of DCK mRNACTDPMID:22206623
DckRat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of DCK mRNACTDPMID:29097150
DckRat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of DCK mRNACTDPMID:32145629
DckRat17beta-estradiol decreases expressionISORGD:15523526480464Estradiol results in decreased expression of DCK mRNACTDPMID:39298647
DckRat2'-deoxycytidine affects bindingISORGD:13447476480464Deoxycytidine binds to DCK proteinCTDPMID:17530837
DckRat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISORGD:15523526480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
DckRat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISORGD:15523526480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
DckRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:15523526480464Tetrachlorodibenzodioxin results in increased expression of DCK mRNACTDPMID:19465110
DckRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:15523526480464Tetrachlorodibenzodioxin affects the expression of DCK mRNACTDPMID:21570461
DckRat2,4,4'-trichlorobiphenyl multiple interactionsISORGD:15523526480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
DckRat3,4-methylenedioxymethamphetamine increases expressionISORGD:15523526480464N-Methyl-3,4-methylenedioxyamphetamine results in increased expression of DCK mRNACTDPMID:20188158
DckRat3-chloropropane-1,2-diol decreases expressionEXP 6480464alpha-Chlorohydrin analog results in decreased expression of DCK protein; alpha-Chlorohydrin results in decreased expression of more ...CTDPMID:26597043
DckRat3-methylcholanthrene increases expressionISORGD:15523526480464Methylcholanthrene results in increased expression of DCK mRNACTDPMID:20713471
DckRat4,4'-diaminodiphenylmethane affects expressionISORGD:155235264804644,4'-diaminodiphenylmethane affects the expression of DCK mRNACTDPMID:18648102
DckRat4,4'-sulfonyldiphenol decreases expressionISORGD:15523526480464bisphenol S results in decreased expression of DCK mRNACTDPMID:33297965
DckRat4-(ethoxymethylene)-2-phenyloxazol-5-one increases expressionISORGD:15523526480464Oxazolone results in increased expression of DCK mRNACTDPMID:21404309
DckRat4-hydroxyphenyl retinamide decreases expressionISORGD:15523526480464Fenretinide results in decreased expression of DCK mRNACTDPMID:28973697

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Biological Process
1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DckRatcarbohydrate derivative metabolic process involved_inIEAARBA:ARBA000262971600115GO_REF:0000117UniProtGO_REF:0000117
DckRatCMP biosynthetic process involved_inIEAGO:00437711600115GO_REF:0000108GOCGO_REF:0000108
DckRatdAMP salvage involved_inIEAUniProtKB:P43346|ensembl:ENSMUSP000000313111600115GO_REF:0000107EnsemblGO_REF:0000107
DckRatdAMP salvage involved_inISORGD:15523521624291 PMID:8748457RGDPMID:8748457
DckRatdeoxycytidine metabolic process  IDA 2300395 RGD 
DckRatdeoxycytidine metabolic process  IMP 2300398 RGD 
DckRatnucleobase-containing compound metabolic process involved_inIEAInterPro:IPR0026241600115GO_REF:0000002InterProGO_REF:0000002
DckRatnucleoside phosphate biosynthetic process involved_inISORGD:13447471624291 PMID:34768989RGDPMID:34768989
DckRatnucleoside phosphate biosynthetic process involved_inIEAUniProtKB:P27707|ensembl:ENSP000002866481600115GO_REF:0000107EnsemblGO_REF:0000107
DckRatpyrimidine nucleotide metabolic process involved_inISSUniProtKB:P277071600115GO_REF:0000024UniProtGO_REF:0000024
DckRatpyrimidine nucleotide metabolic process involved_inIEAUniProtKB:P27707|ensembl:ENSP000002866481600115GO_REF:0000107EnsemblGO_REF:0000107
DckRatpyrimidine nucleotide metabolic process involved_inISORGD:13447471624291 PMID:12808445RGDPMID:12808445
1 to 12 of 12 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DckRatcytoplasm is_active_inIBAFB:FBgn0019957|FB:FBgn0022338|MGI:1351602|MGI:1913266|MGI:1914523|PANTHER:PTN000053758|UniProtKB:O00142|UniProtKB:O95299|UniProtKB:Q168541600115GO_REF:0000033GO_CentralGO_REF:0000033
DckRatmitochondrion is_active_inIBAMGI:1351602|MGI:1913266|PANTHER:PTN002236975|UniProtKB:O00142|UniProtKB:Q168541600115GO_REF:0000033GO_CentralGO_REF:0000033
DckRatnucleoplasm located_inIEAUniProtKB:P27707|ensembl:ENSP000002866481600115GO_REF:0000107EnsemblGO_REF:0000107
DckRatnucleoplasm located_inISORGD:13447471624291 RGDGO_REF:0000052
DckRatnucleoplasm located_inIEAUniProtKB:F5CTF3|ensembl:ENSP000002866481600115GO_REF:0000107EnsemblGO_REF:0000107
DckRatnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
DckRatnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044

Molecular Function
1 to 20 of 34 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DckRatATP binding  IDA 2300395 RGD 
DckRatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
DckRatATP binding enablesIEAInterPro:IPR0026241600115GO_REF:0000002InterProGO_REF:0000002
DckRatcytidine kinase activity enablesIEAUniProtKB:P27707|ensembl:ENSP000002866481600115GO_REF:0000107EnsemblGO_REF:0000107
DckRatcytidine kinase activity enablesISORGD:13447471624291 PMID:34768989RGDPMID:34768989
DckRatdeoxyadenosine kinase activity enablesIEAUniProtKB:P27707|ensembl:ENSP000002866481600115GO_REF:0000107EnsemblGO_REF:0000107
DckRatdeoxyadenosine kinase activity enablesIEARHEA:234521600115GO_REF:0000116RHEAGO_REF:0000116
DckRatdeoxyadenosine kinase activity enablesISORGD:15523521624291 PMID:8748457RGDPMID:8748457
DckRatdeoxyadenosine kinase activity enablesIEAEC:2.7.1.761600115GO_REF:0000003UniProtGO_REF:0000003
DckRatdeoxyadenosine kinase activity enablesISORGD:13447471624291 PMID:34768989RGDPMID:34768989
DckRatdeoxyadenosine kinase activity enablesIEAUniProtKB:P43346|ensembl:ENSMUSP000000313111600115GO_REF:0000107EnsemblGO_REF:0000107
DckRatdeoxycytidine kinase activity  IMP 2300398 RGD 
DckRatdeoxycytidine kinase activity enablesIEARHEA:200611600115GO_REF:0000116RHEAGO_REF:0000116
DckRatdeoxycytidine kinase activity enablesIBAPANTHER:PTN002575111|RGD:620667|UniProtKB:A0A1L8HV70|UniProtKB:P277071600115GO_REF:0000033GO_CentralGO_REF:0000033
DckRatdeoxycytidine kinase activity enablesIEAEC:2.7.1.741600115GO_REF:0000003UniProtGO_REF:0000003
DckRatdeoxycytidine kinase activity enablesISORGD:13447471624291 PMID:12808445, PMID:20637175, PMID:34768989RGDPMID:12808445|PMID:20637175|PMID:34768989
DckRatdeoxycytidine kinase activity enablesIEAUniProtKB:P27707|ensembl:ENSP000002866481600115GO_REF:0000107EnsemblGO_REF:0000107
DckRatdeoxycytidine kinase activity  IDA 2300395 RGD 
DckRatdeoxyguanosine kinase activity enablesIEAUniProtKB:P27707|ensembl:ENSP000002866481600115GO_REF:0000107EnsemblGO_REF:0000107
DckRatdeoxyguanosine kinase activity enablesIEAEC:2.7.1.1131600115GO_REF:0000003UniProtGO_REF:0000003
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Imported Annotations - SMPDB

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DckRatgemcitabine pharmacodynamics pathway  ISORGD:134474710402751 SMPDBSMP:00446
DckRatgemcitabine pharmacokinetics pathway  ISORGD:134474710402751 SMPDBSMP:00603
DckRatlamivudine pharmacokinetics pathway  ISORGD:134474710402751 SMPDBSMP:00649

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DckRatpurine metabolic pathway  IEA 6907045 KEGGrno:00230
DckRatpyrimidine metabolic pathway  IEA 6907045 KEGGrno:00240

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#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Deoxycytidine kinase and thymidine kinase activities in rat brain. Singhal RL and Weber G, Oncol Res. 1993;5(4-5):191-5.
9. Transfection of wild-type deoxycytidine kinase (dck) cDNA into an AraC- and DAC-resistant rat leukemic cell line of clonal origin fully restores drug sensitivity. Stegmann AP, etal., Blood. 1995 Mar 1;85(5):1188-94.
10. Cloning of the Dck gene encoding rat deoxycytidine kinase. Stegmann AP, etal., Gene 1994 Dec 15;150(2):351-4.
11. Role of deoxycytidine kinase in an in vitro model for AraC- and DAC-resistance: substrate-enzyme interactions with deoxycytidine, 1-beta-D-arabinofuranosylcytosine and 5-aza-2'-deoxycytidine. Stegmann AP, etal., Leukemia. 1993 Jul;7(7):1005-11.
1 to 11 of 11 rows
PMID:2539852   PMID:2844225   PMID:11687801   PMID:12808445   PMID:20544526  



Dck
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81419,589,298 - 19,610,326 (-)NCBIGRCr8
mRatBN7.21419,305,218 - 19,326,247 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1419,305,218 - 19,326,247 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1419,294,940 - 19,315,959 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01420,613,805 - 20,634,822 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01419,316,197 - 19,337,208 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01420,935,442 - 20,952,939 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1420,935,369 - 20,953,095 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01420,845,716 - 20,863,008 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41420,886,700 - 20,904,305 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11420,886,695 - 20,904,305 (-)NCBI
Celera1418,648,191 - 18,665,287 (-)NCBICelera
Cytogenetic Map14p22NCBI
DCK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38470,993,649 - 71,030,914 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl470,992,538 - 71,030,914 (+)EnsemblGRCh38hg38GRCh38
GRCh37471,859,366 - 71,896,631 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36472,078,256 - 72,115,477 (+)NCBINCBI36Build 36hg18NCBI36
Build 34472,224,426 - 72,261,648NCBI
Celera469,216,290 - 69,253,648 (+)NCBICelera
Cytogenetic Map4q13.3NCBI
HuRef467,664,417 - 67,701,817 (+)NCBIHuRef
CHM1_1471,895,140 - 71,932,501 (+)NCBICHM1_1
T2T-CHM13v2.0474,336,086 - 74,373,339 (+)NCBIT2T-CHM13v2.0
Dck
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39588,912,872 - 88,931,136 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl588,912,855 - 88,931,140 (+)EnsemblGRCm39 Ensembl
GRCm38588,765,013 - 88,783,277 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl588,764,996 - 88,783,281 (+)EnsemblGRCm38mm10GRCm38
MGSCv37589,194,038 - 89,212,302 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36589,839,588 - 89,857,838 (+)NCBIMGSCv36mm8
Celera586,914,328 - 86,932,500 (+)NCBICelera
Cytogenetic Map5E1NCBI
cM Map543.96NCBI
Dck
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554472,031,258 - 2,067,210 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554472,031,851 - 2,067,005 (-)NCBIChiLan1.0ChiLan1.0
DCK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2359,054,071 - 59,094,834 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1459,249,120 - 59,286,370 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0453,193,475 - 53,230,708 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1459,537,350 - 59,574,537 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl459,536,997 - 59,574,537 (-)Ensemblpanpan1.1panPan2
DCK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11360,206,742 - 60,236,338 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1360,205,937 - 60,235,678 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1359,940,643 - 59,971,419 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01361,012,272 - 61,043,696 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1361,011,720 - 61,076,885 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11360,627,511 - 60,658,525 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01360,119,020 - 60,150,439 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01361,266,521 - 61,297,680 (+)NCBIUU_Cfam_GSD_1.0
Dck
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528515,366,311 - 15,391,122 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365983,817,994 - 3,843,241 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365983,819,239 - 3,846,692 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1867,706,661 - 67,736,743 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2871,614,965 - 71,642,025 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DCK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1719,503,855 - 19,535,355 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl719,504,038 - 19,535,674 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660843,326,990 - 3,358,445 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dck
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248902,335,081 - 2,368,653 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248902,335,064 - 2,367,826 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Dck
137 total Variants

Predicted Target Of
Summary Value
Count of predictions:221
Count of miRNA genes:158
Interacting mature miRNAs:187
Transcripts:ENSRNOT00000004440
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 20 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
631528Scl11Serum cholesterol level QTL 114.9blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)141757341219726296Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat

1 to 10 of 20 rows
RH141381  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21419,306,660 - 19,306,840 (+)MAPPERmRatBN7.2
Rnor_6.01420,933,590 - 20,933,769NCBIRnor6.0
Rnor_5.01420,843,864 - 20,844,043UniSTSRnor5.0
RGSC_v3.41420,884,848 - 20,885,027UniSTSRGSC3.4
Celera1418,646,339 - 18,646,518UniSTS
RH 3.4 Map14305.39UniSTS
Cytogenetic Map14p22UniSTS
AI176044  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81419,591,237 - 19,591,432 (+)Marker Load Pipeline
mRatBN7.21419,307,157 - 19,307,352 (+)MAPPERmRatBN7.2
Rnor_6.01420,934,087 - 20,934,281NCBIRnor6.0
Rnor_5.01420,844,361 - 20,844,555UniSTSRnor5.0
RGSC_v3.41420,885,345 - 20,885,539UniSTSRGSC3.4
Celera1418,646,836 - 18,647,030UniSTS
RH 3.4 Map14284.8UniSTS
Cytogenetic Map14p22UniSTS
AI231703  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21419,324,261 - 19,324,422 (+)MAPPERmRatBN7.2
Rnor_6.01420,951,257 - 20,951,417NCBIRnor6.0
Rnor_5.01420,861,326 - 20,861,486UniSTSRnor5.0
RGSC_v3.41420,902,623 - 20,902,783UniSTSRGSC3.4
Celera1418,663,605 - 18,663,765UniSTS
RH 3.4 Map14284.3UniSTS
Cytogenetic Map14p22UniSTS
GDB:437189  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21497,517,490 - 97,517,920 (+)MAPPERmRatBN7.2
Rnor_6.014108,306,182 - 108,306,611NCBIRnor6.0
Rnor_5.014105,142,039 - 105,142,468UniSTSRnor5.0
RGSC_v3.414104,467,365 - 104,467,794UniSTSRGSC3.4
Celera1496,494,461 - 96,494,890UniSTS
Cytogenetic Map14p22UniSTS
Cytogenetic Map14q22UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000004440   ⟹   ENSRNOP00000004440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1419,305,218 - 19,326,247 (-)Ensembl
Rnor_6.0 Ensembl1420,935,369 - 20,953,095 (-)Ensembl
RefSeq Acc Id: NM_024158   ⟹   NP_077072
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81419,589,298 - 19,610,326 (-)NCBI
mRatBN7.21419,305,218 - 19,326,247 (-)NCBI
Rnor_6.01420,935,442 - 20,952,939 (-)NCBI
Rnor_5.01420,845,716 - 20,863,008 (-)NCBI
RGSC_v3.41420,886,700 - 20,904,305 (-)RGD
Celera1418,648,191 - 18,665,287 (-)RGD
Sequence:
Protein RefSeqs NP_077072 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA65098 (Get FASTA)   NCBI Sequence Viewer  
  EDL88529 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000004440
GenBank Protein P48769 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_077072   ⟸   NM_024158
- UniProtKB: P48769 (UniProtKB/Swiss-Prot),   G3V6E9 (UniProtKB/TrEMBL),   A6KKI1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004440   ⟸   ENSRNOT00000004440
Deoxynucleoside kinase

Name Modeler Protein Id AA Range Protein Structure
AF-P48769-F1-model_v2 AlphaFold P48769 1-260 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13699238
Promoter ID:EPDNEW_R9763
Type:initiation region
Name:Dck_1
Description:deoxycytidine kinase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01420,953,031 - 20,953,091EPDNEW


1 to 26 of 26 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-16168 BioCyc
BioCyc Pathway PWY-7199 [pyrimidine deoxyribonucleosides salvage] BioCyc
  PWY-7224 [purine deoxyribonucleosides salvage] BioCyc
BioCyc Pathway Image PWY-7199 BioCyc
  PWY-7224 BioCyc
Ensembl Genes ENSRNOG00000003296 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000004440 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
InterPro DCK/DGK UniProtKB/Swiss-Prot
  Deoxyribonucleoside_kinase UniProtKB/Swiss-Prot
  DNK_dom UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
KEGG Report rno:79127 UniProtKB/Swiss-Prot
NCBI Gene 79127 ENTREZGENE
PANTHER DEOXYCYTIDINE KINASE UniProtKB/Swiss-Prot
  DEOXYNUCLEOSIDE KINASE UniProtKB/Swiss-Prot
Pfam dNK UniProtKB/Swiss-Prot
PharmGKB DCK RGD
PhenoGen Dck PhenoGen
PIRSF DNK UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003296 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A6KKI1 ENTREZGENE, UniProtKB/TrEMBL
  DCK_RAT UniProtKB/Swiss-Prot
  G3V6E9 ENTREZGENE, UniProtKB/TrEMBL
  P48769 ENTREZGENE
1 to 26 of 26 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Dck  deoxycytidine kinase      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Dck  deoxycytidine kinase      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_expression high expression in thymus and weak expression in liver and lung 727775
gene_homology shows 89.7 and 92.2% nucleotide identity with the human and mouse Dck 727775
gene_protein encodes 260 aa protein 727775