RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: Intestinal Ischemia
Accession: DOID:9004663
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Definition: A hypoperfusion of the blood through the intestine caused by a pathologic constriction or obstruction of its blood vessels, or an absence of blood circulation.
Synonyms: exact_synonym: intestine ischemia
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Adm
adrenomedullin
IEP
protein:decreased expression:plasma
RGD
PMID:17263982
RGD:7364988
NCBI chr 1:164,745,484...164,747,655
Ensembl chr 1:164,745,466...164,747,654
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Cfh
complement factor H
IEP
protein:decreased expression:plasma
RGD
PMID:17263982
RGD:7364988
NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838
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Gch1
GTP cyclohydrolase 1
IEP
associated with Experimental Radiation Injuries;mRNA,protein:decreased expression:mesenteric artery
RGD
PMID:32562786
RGD:329961328
NCBI chr15:20,404,267...20,437,727
Ensembl chr15:20,402,527...20,437,698
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Npy
neuropeptide Y
IEP
associated with Brain Injuries;mRNA, protein:increased expression:jejunum, plasma
RGD
PMID:23622727
RGD:10448970
NCBI chr 4:78,881,294...78,888,495
Ensembl chr 4:78,881,264...78,888,495
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Ace
angiotensin I converting enzyme
IEP
RGD
PMID:15001561
RGD:13515113
NCBI chr10:90,910,316...90,930,437
Ensembl chr10:90,910,316...90,931,131
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Agt
angiotensinogen
IEP
protein:increased expression:plasma
RGD
PMID:15001561
RGD:13515113
NCBI chr19:52,529,139...52,549,618
Ensembl chr19:52,529,185...52,540,977
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Ahr
aryl hydrocarbon receptor
treatment
IEP
RGD
PMID:22079846
RGD:401794136
NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568
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Atp5f1d
ATP synthase F1 subunit delta
treatment
IEP
RGD
PMID:24232000
RGD:13792678
NCBI chr 7:9,560,604...9,565,919
Ensembl chr 7:9,560,608...9,565,929
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Casp3
caspase 3
treatment
IEP
RGD
PMID:23946597
RGD:13782356
NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648
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Casp9
caspase 9
treatment
IEP
RGD
PMID:23946597
RGD:13782356
NCBI chr 5:154,108,872...154,126,628
Ensembl chr 5:154,109,046...154,126,626
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Ccl2
C-C motif chemokine ligand 2
IEP
mRNA:increased expression:small intestine
RGD
PMID:18475188
RGD:2307016
NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
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Cd14
CD14 molecule
IEP
protein:increased expression:heart, kidney, liver, lung
RGD
PMID:22493902
RGD:9685194
NCBI chr18:28,335,522...28,337,383
Ensembl chr18:28,335,340...28,337,261
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Cldn1
claudin 1
IEP
protein:decreased expression:colon:
RGD
PMID:19929946
RGD:2325127
NCBI chr11:74,421,569...74,436,728
Ensembl chr11:74,421,569...74,436,724
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Cldn3
claudin 3
IEP
protein:decreased expression:colon:
RGD
PMID:19929946
RGD:2325127
NCBI chr12:21,708,538...21,710,010
Ensembl chr12:21,708,398...21,711,001
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Cldn5
claudin 5
IEP
protein:decreased expression:colon:
RGD
PMID:19929946
RGD:2325127
NCBI chr11:82,212,822...82,214,248
Ensembl chr11:82,211,475...82,214,992
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Crp
C-reactive protein
IEP
protein:increased expression:intestine:
RGD
PMID:17981193
RGD:5129536
NCBI chr13:85,135,384...85,175,178
Ensembl chr13:85,124,977...85,175,178
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Csf3
colony stimulating factor 3
treatment
ISO
RGD
PMID:9117128
RGD:11039476
NCBI chr10:83,660,787...83,664,569
Ensembl chr10:83,661,207...83,663,603
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Cyp1a2
cytochrome P450, family 1, subfamily a, polypeptide 2
treatment
IEP
RGD
PMID:22079846
RGD:401794136
NCBI chr 8:58,075,367...58,082,255
Ensembl chr 8:58,075,367...58,082,312
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F7
coagulation factor VII
ISO
human protein in a rat model
RGD
PMID:22920553
RGD:11041662
NCBI chr16:76,489,775...76,500,636
Ensembl chr16:76,489,717...76,500,610
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Faslg
Fas ligand
treatment
IEP
RGD
PMID:29170412
RGD:13792603
NCBI chr13:74,151,519...74,172,760
Ensembl chr13:74,154,954...74,162,215
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Gpt
glutamic--pyruvic transaminase
IEP
protein:increased expression:serum
RGD
PMID:16557159
RGD:401717563
NCBI chr 7:108,416,646...108,419,495
Ensembl chr 7:108,416,642...108,419,494
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Hmgb1
high mobility group box 1
IEP
RGD
PMID:22093738
RGD:10402181
NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565 Ensembl chr16:5,901,586...5,978,565
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Hmox1
heme oxygenase 1
treatment
IEP
RGD
PMID:19362701
RGD:10766423
NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079
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Hp
haptoglobin
treatment
IEP
RGD
PMID:11922743
RGD:11041790
NCBI chr19:37,539,626...37,544,178
Ensembl chr19:37,539,627...37,544,523
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Icam1
intercellular adhesion molecule 1
treatment
IEP
RGD
PMID:12095141 PMID:22079846
RGD:11522715 , RGD:401794136
NCBI chr 8:19,553,063...19,565,438
Ensembl chr 8:19,553,645...19,565,438
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Il6
interleukin 6
treatment
IDA IEP
RGD
PMID:11959089 PMID:22079846
RGD:11062110 , RGD:401794136
NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
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Jak2
Janus kinase 2
IMP
RGD
PMID:22777122
RGD:10403072
NCBI chr 1:226,995,334...227,054,381
Ensembl chr 1:226,995,334...227,054,189
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Lbp
lipopolysaccharide binding protein
IEP
protein:increased expression:heart, kidney, liver, lung
RGD
PMID:22493902
RGD:9685194
NCBI chr 3:146,953,889...146,981,032
Ensembl chr 3:146,954,015...146,981,586
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Mbl2
mannose binding lectin 2
severity
ISO
DNA:polymorphisms:exon:
RGD
PMID:19477015
RGD:12910933
NCBI chr 1:228,016,439...228,024,736
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Mir155
microRNA 155
ISO
miRNA:increased expression:Peyer's patch
RGD
PMID:30206757
RGD:21409753
NCBI chr11:23,774,654...23,774,718
Ensembl chr11:23,774,654...23,774,718
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Mir21
microRNA 21
IEP
RGD
PMID:30309483
RGD:41410822
NCBI chr10:71,405,257...71,405,348
Ensembl chr10:71,405,257...71,405,348
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Nfkbia
NFKB inhibitor alpha
treatment
IEP
RGD
PMID:22079846
RGD:401794136
NCBI chr 6:72,858,713...72,861,941
Ensembl chr 6:72,858,712...72,861,941
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Nos3
nitric oxide synthase 3
treatment
IDA
RGD
PMID:16610051
RGD:7777112
NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166
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Nqo1
NAD(P)H quinone dehydrogenase 1
treatment
IEP
RGD
PMID:28382390
RGD:13440093
NCBI chr19:35,295,633...35,310,528
Ensembl chr19:35,295,573...35,310,557
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Nr1h4
nuclear receptor subfamily 1, group H, member 4
disease_progression
IEP
mRNA:decreased expression:liver (rat)
RGD
PMID:23331901
RGD:15042883
NCBI chr 7:23,846,122...23,942,085
Ensembl chr 7:23,846,122...23,942,047
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Parg
poly (ADP-ribose) glycohydrolase
treatment
IMP
RGD
PMID:15791006
RGD:13514040
NCBI chr16:7,436,429...7,544,276
Ensembl chr16:7,436,476...7,544,273
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Ppp1r15a
protein phosphatase 1, regulatory subunit 15A
ISO
mRNA:increased expression:jejunum (human)
RGD
PMID:20965186
RGD:9999150
NCBI chr 1:96,000,053...96,003,128
Ensembl chr 1:96,000,058...96,003,171
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Proc
protein C, inactivator of coagulation factors Va and VIIIa
treatment
ISO
RGD
PMID:15187522
RGD:11250409
NCBI chr18:23,764,367...23,774,816
Ensembl chr18:23,764,368...23,775,133
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Rela
RELA proto-oncogene, NF-kB subunit
treatment
IEP
RGD
PMID:22079846
RGD:401794136
NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484
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Serpinc1
serpin family C member 1
treatment
IEP
RGD
PMID:21046505
RGD:11035258
NCBI chr13:73,257,208...73,271,476
Ensembl chr13:73,257,179...73,284,293
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Serpine1
serpin family E member 1
IDA
protein:increased activity:plasma (rat)
RGD
PMID:12717359
RGD:11081012
NCBI chr12:19,601,272...19,611,657
Ensembl chr12:19,601,272...19,611,657
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Socs1
suppressor of cytokine signaling 1
treatment
IEP
RGD
PMID:27538408
RGD:151347179
NCBI chr10:4,882,651...4,884,342
Ensembl chr10:4,882,560...4,884,383
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Tnf
tumor necrosis factor
treatment
IEP
RGD
PMID:22079846
RGD:401794136
NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
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Traf6
TNF receptor associated factor 6
IEP
RGD
PMID:27538408
RGD:151347179
NCBI chr 3:87,963,517...87,988,316
Ensembl chr 3:87,963,514...87,983,507
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Trem1
triggering receptor expressed on myeloid cells 1
ameliorates
IDA
associated with mesenteric vascular occlusion;
RGD
PMID:18091551
RGD:127284848
NCBI chr 9:12,763,819...12,779,285
Ensembl chr 9:12,763,819...12,779,203
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Vwf
von Willebrand factor
IEP
protein:increased expression:plasma:
RGD
PMID:10365842
RGD:11080742
NCBI chr 4:158,360,152...158,491,539
Ensembl chr 4:158,360,152...158,491,539
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Xdh
xanthine dehydrogenase
treatment
IEP
RGD
PMID:23010742
RGD:13209016
NCBI chr 6:21,530,463...21,592,172
Ensembl chr 6:21,530,113...21,592,268
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