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dendrite extension - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:dendrite extension
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Accession:GO:0097484 term browser browse the term
Definition:Long distance growth of a single dendrite involved in cellular development.

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show annotations for term's descendants           Sort by:
dendrite extension term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Auts2 activator of transcription and developmental regulator AUTS2 involved_in ISO (PMID:25533347) RGD PMID:25533347 NCBI chr12:24,104,187...25,194,123
Ensembl chr12:24,104,192...25,194,416 		JBrowse link
G Bdnf brain-derived neurotrophic factor acts_upstream_of_or_within ISO (PMID:24035762) RGD PMID:24035762 NCBI chr 3:116,619,633...116,670,212
Ensembl chr 3:96,165,042...96,215,615 		JBrowse link
G Cdkl3 cyclin-dependent kinase-like 3 acts_upstream_of_or_within
involved_in 		IMP
ISO
IBA 		PMID:20347982
(PMID:20347982)
GO_REF:0000033 		RGD
GO_Central		 PMID:20347982 PMID:20347982 GO_REF:0000033, RGD:8693354 NCBI chr10:36,755,413...36,850,197
Ensembl chr10:36,266,977...36,349,268 		JBrowse link
G Cyfip1 cytoplasmic FMR1 interacting protein 1 involved_in ISO (PMID:27605705) RGD PMID:27605705 NCBI chr 1:106,710,924...106,799,393
Ensembl chr 1:106,711,016...106,799,386 		JBrowse link
G Cyfip2 cytoplasmic FMR1 interacting protein 2 involved_in ISO
IEA 		(PMID:27605705)
GO_REF:0000107 		RGD
Ensembl		 PMID:27605705 GO_REF:0000107 NCBI chr10:30,621,318...30,741,113
Ensembl chr10:30,621,318...30,741,113 		JBrowse link
G Llph LLP homolog, long-term synaptic facilitation factor involved_in IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:26961175) 		GO_Central
Ensembl
RGD		 PMID:26961175 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:55,735,317...55,740,341
Ensembl chr 7:55,735,400...55,740,339 		JBrowse link
G Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:21849472) 		UniProt
Ensembl
RGD		 PMID:21849472 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:99,653,189...99,827,500
Ensembl chr 5:99,653,152...100,113,843 		JBrowse link
G Slc9a6 solute carrier family 9 member A6 acts_upstream_of_or_within ISO (PMID:24035762) RGD PMID:24035762 NCBI chr  X:139,468,045...139,524,111
Ensembl chr  X:134,420,756...134,485,375 		JBrowse link
G Stk11 serine/threonine kinase 11 acts_upstream_of_or_within ISO MGI:2387402 (PMID:24367100) RGD PMID:24367100 NCBI chr 7:10,225,204...10,241,965
Ensembl chr 7:9,575,269...9,591,315 		JBrowse link
G Tmem108 transmembrane protein 108 involved_in IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:21849472), (PMID:27605705) 		GO_Central
Ensembl
RGD		 PMID:21849472 PMID:27605705 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:104,066,081...104,360,172
Ensembl chr 8:104,066,078...104,360,094 		JBrowse link
G Wasf1 WASP family member 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:27605705) 		Ensembl
RGD		 PMID:27605705 GO_REF:0000107 NCBI chr20:45,908,458...45,956,118
Ensembl chr20:44,325,795...44,372,996 		JBrowse link
negative regulation of dendrite extension term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 IMP RGD PMID:32554807 RGD:407532699 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529 		JBrowse link
G Atg7 autophagy related 7 IMP RGD PMID:32554807 RGD:407532699 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593 		JBrowse link
G Bcl11a BCL11 transcription factor A IMP RGD PMID:19616629 RGD:11100018 NCBI chr14:102,230,147...102,325,289
Ensembl chr14:98,030,461...98,124,180 		JBrowse link
G Mecp2 methyl CpG binding protein 2 IMP RGD PMID:24636259 RGD:12789709 NCBI chr  X:156,932,481...156,995,981
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Ostn osteocrin involved_in ISO
IEA 		(PMID:27830782)
GO_REF:0000107 		RGD
Ensembl		 PMID:27830782 GO_REF:0000107 NCBI chr11:73,442,167...73,478,498
Ensembl chr11:73,442,487...73,468,603 		JBrowse link
G Pten phosphatase and tensin homolog IMP RGD PMID:23028614 RGD:151893507 NCBI chr 1:240,043,707...240,110,330
Ensembl chr 1:230,630,338...230,696,838 		JBrowse link
G Spag9 sperm associated antigen 9 IMP RGD PMID:19959466 RGD:30296662 NCBI chr10:79,440,311...79,574,709
Ensembl chr10:78,943,479...79,077,797 		JBrowse link
positive regulation of dendrite extension term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afdn afadin, adherens junction formation factor IMP RGD PMID:22948147 RGD:13838731 NCBI chr 1:58,041,065...58,170,505
Ensembl chr 1:53,905,373...54,034,216 		JBrowse link
G Cacng7 calcium voltage-gated channel auxiliary subunit gamma 7 IMP RGD PMID:21610096 RGD:13524563 NCBI chr 1:74,715,483...74,746,669
Ensembl chr 1:65,800,355...65,831,006 		JBrowse link
G Cpne5 copine 5 involved_in ISO
IEA 		(PMID:23999003)
GO_REF:0000107 		RGD
Ensembl		 PMID:23999003 GO_REF:0000107 NCBI chr20:7,206,742...7,289,309
Ensembl chr20:7,206,742...7,288,883 		JBrowse link
G Cpne6 copine 6 involved_in ISO
IEA 		(PMID:23999003)
GO_REF:0000107 		RGD
Ensembl		 PMID:23999003 GO_REF:0000107 NCBI chr15:28,998,293...29,005,044
Ensembl chr15:28,998,293...29,005,044 		JBrowse link
G Cpne9 copine family member 9 involved_in IEA
ISO 		GO_REF:0000107
(PMID:23999003) 		Ensembl
RGD		 PMID:23999003 GO_REF:0000107 NCBI chr 4:146,429,961...146,454,335
Ensembl chr 4:146,430,792...146,454,333 		JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 IMP RGD PMID:28104461 RGD:13463105 NCBI chr13:42,630,383...42,634,288
Ensembl chr13:40,077,976...40,081,883 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IMP RGD PMID:24990929 RGD:10002784 NCBI chr17:6,269,302...6,280,429
Ensembl chr17:6,262,998...6,274,997 		JBrowse link
G Itsn2 intersectin 2 involved_in ISO
IEA 		(PMID:23999003)
GO_REF:0000107 		RGD
Ensembl		 PMID:23999003 GO_REF:0000107 NCBI chr 6:27,616,645...27,727,373
Ensembl chr 6:27,600,406...27,727,124 		JBrowse link
G Mecp2 methyl CpG binding protein 2 IMP RGD PMID:19442733 RGD:11069248 NCBI chr  X:156,932,481...156,995,981
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Mir222 microRNA 222 IMP RGD PMID:23028614 RGD:151893507 NCBI chr  X:6,022,621...6,022,723
Ensembl chr  X:3,428,904...3,429,006 		JBrowse link
G Mul1 mitochondrial E3 ubiquitin protein ligase 1 involved_in ISO
IEA 		UniProtKB:Q9WVS6 (PMID:24898855)
GO_REF:0000107 		RGD
Ensembl		 PMID:24898855 GO_REF:0000107 NCBI chr 5:150,652,812...150,661,863
Ensembl chr 5:150,652,812...150,661,863 		JBrowse link
G Nedd4l NEDD4 like E3 ubiquitin protein ligase involved_in ISO
IEA 		(PMID:23999003)
GO_REF:0000107 		RGD
Ensembl		 PMID:23999003 GO_REF:0000107 NCBI chr18:60,663,918...60,996,824
Ensembl chr18:58,393,509...58,723,137 		JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IMP RGD PMID:18842885 RGD:8554167 NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557 		JBrowse link
G Plaa phospholipase A2, activating protein involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:28413018)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:28413018 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:109,428,600...109,460,373
Ensembl chr 5:109,428,265...109,460,282 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:Q8VCM5 (PMID:24898855) 		Ensembl
RGD		 PMID:24898855 GO_REF:0000107 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:48,690,556...49,882,555 		JBrowse link
G Rasal1 RAS protein activator like 1 involved_in ISO
IEA 		(PMID:23999003)
GO_REF:0000107 		RGD
Ensembl		 PMID:23999003 GO_REF:0000107 NCBI chr12:35,881,269...35,913,727
Ensembl chr12:35,881,270...35,913,727 		JBrowse link
G Reg1a regenerating family member 1 alpha IMP RGD PMID:22158612 RGD:9850120 NCBI chr 4:112,450,466...112,453,130
Ensembl chr 4:110,892,453...110,895,570 		JBrowse link
G Rims1 regulating synaptic membrane exocytosis 1 involved_in ISO
IEA 		(PMID:23999003)
GO_REF:0000107 		RGD
Ensembl		 PMID:23999003 GO_REF:0000107 NCBI chr 9:24,696,959...25,196,404
Ensembl chr 9:24,698,854...25,196,631 		JBrowse link
G Rims2 regulating synaptic membrane exocytosis 2 involved_in ISO (PMID:23999003) RGD PMID:23999003 NCBI chr 7:70,248,104...70,759,134
Ensembl chr 7:70,243,872...70,757,491 		JBrowse link
G Rnf157 ring finger protein 157 involved_in IMP PMID:25342469 UniProt PMID:25342469 RGD:13825435 NCBI chr10:101,571,972...101,639,874
Ensembl chr10:101,566,295...101,639,942 		JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 IMP RGD PMID:18768694 RGD:13504749 NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:233,750,838...233,784,784 		JBrowse link
G Slc23a2 solute carrier family 23 member 2 IMP RGD PMID:27085842 RGD:26884454 NCBI chr 3:139,755,583...139,913,304
Ensembl chr 3:119,302,666...119,460,343 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO
IEA 		(PMID:23999003)
GO_REF:0000107 		RGD
Ensembl		 PMID:23999003 GO_REF:0000107 NCBI chr12:14,748,717...14,840,273
Ensembl chr12:9,635,025...9,726,519 		JBrowse link
G Syt1 synaptotagmin 1 involved_in ISO
IEA 		(PMID:23999003)
GO_REF:0000107 		RGD
Ensembl		 PMID:23999003 GO_REF:0000107 NCBI chr 7:43,813,204...44,358,020
Ensembl chr 7:43,815,785...44,357,803 		JBrowse link
G Syt17 synaptotagmin 17 involved_in ISO (PMID:23999003) RGD PMID:23999003 NCBI chr 1:182,129,491...182,195,827
Ensembl chr 1:172,696,120...172,761,960 		JBrowse link
G Syt2 synaptotagmin 2 involved_in ISO
IEA 		(PMID:23999003)
GO_REF:0000107 		RGD
Ensembl		 PMID:23999003 GO_REF:0000107 NCBI chr13:46,088,046...46,197,976
Ensembl chr13:46,185,282...46,193,859 		JBrowse link
G Syt3 synaptotagmin 3 involved_in ISO
IEA 		(PMID:23999003)
GO_REF:0000107 		RGD
Ensembl		 PMID:23999003 GO_REF:0000107 NCBI chr 1:104,017,341...104,032,046
Ensembl chr 1:94,881,247...94,895,246 		JBrowse link
G Syt4 synaptotagmin 4 involved_in ISO (PMID:23999003) RGD PMID:23999003 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332 		JBrowse link
G Unc13a unc-13 homolog A involved_in ISO (PMID:23999003) RGD PMID:23999003 NCBI chr16:18,333,910...18,381,813
Ensembl chr16:18,336,229...18,381,872 		JBrowse link
G Wnt5a Wnt family member 5A IMP RGD PMID:25424568 RGD:11060597 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      cell growth 543
        developmental cell growth 296
          neuron projection extension 210
            dendrite extension 47
              negative regulation of dendrite extension 7
              positive regulation of dendrite extension 30
              regulation of dendrite extension + 36
Path 2
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          system development 4644
            nervous system development 2881
              neurogenesis 2127
                generation of neurons 1821
                  neuron differentiation 1741
                    neuron development 1423
                      neuron projection development 1247
                        neuron projection morphogenesis 763
                          neuron projection extension 210
                            dendrite extension 47
                              negative regulation of dendrite extension 7
                              positive regulation of dendrite extension 30
                              regulation of dendrite extension + 36
paths to the root