Tmem108 (transmembrane protein 108)

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Gene: Tmem108 (transmembrane protein 108) Rattus norvegicus

Analyze

Symbol:

Tmem108

Name:

transmembrane protein 108

RGD ID:

1311530

Description:

Predicted to be involved in several processes, including cellular response to brain-derived neurotrophic factor stimulus; nervous system development; and regulation of signal transduction. Predicted to be located in several cellular components, including axon; endosome; and postsynaptic density. Orthologous to human TMEM108 (transmembrane protein 108); INTERACTS WITH 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC300967; RGD1311530; similar to mucin 7, salivary

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM108 (transmembrane protein 108)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tmem108 (transmembrane protein 108)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem108 (transmembrane protein 108)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM108 (transmembrane protein 108)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM108 (transmembrane protein 108)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem108 (transmembrane protein 108)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM108 (transmembrane protein 108)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM108 (transmembrane protein 108)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem108 (transmembrane protein 108)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Tmem108 (transmembrane protein 108)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMEM108 (transmembrane protein 108)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem108 (transmembrane protein 108)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tmem108	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	104,066,081 - 104,360,172 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	104,066,078 - 104,360,094 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	109,724,812 - 110,012,432 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	107,923,985 - 108,211,619 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	105,766,682 - 106,054,310 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	111,968,568 - 112,265,623 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	111,970,288 - 111,984,572 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	111,359,492 - 111,611,861 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	108,526,665 - 108,559,580 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	108,546,130 - 108,650,112 (-)	NCBI
Celera	8	103,441,328 - 103,731,916 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alkaptonuria (ISO)

genetic disease (ISO)

nephronophthisis (ISO)

Primary Lymphedema with Myelodysplasia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

buta-1,3-diene (ISO)

butanal (ISO)

CGP 52608 (ISO)

dorsomorphin (ISO)

ethanol (ISO)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

methimazole (EXP)

methylmercury chloride (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

potassium dichromate (ISO)

propanal (ISO)

SB 431542 (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tamoxifen (ISO)

temozolomide (ISO)

triclosan (ISO)

tunicamycin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cellular response to brain-derived neurotrophic factor stimulus (ISO)

dendrite extension (IBA,ISO)

dentate gyrus development (ISO)

modulation of excitatory postsynaptic potential (ISO)

neuron projection development (ISO)

positive regulation of neurotrophin TRK receptor signaling pathway (ISO)

postsynaptic density organization (IBA,ISO)

receptor-mediated endocytosis (ISO)

retrograde axonal transport (IBA,ISO)

Cellular Component

axon (IBA,ISO)

axon cytoplasm (IEA)

early endosome (IBA,ISO)

endosome membrane (IBA,ISO)

postsynaptic density (IBA,ISO)

somatodendritic compartment (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:17287360	PMID:21849472	PMID:27605705	PMID:28096412

Genomics

Comparative Map Data

Tmem108
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	104,066,081 - 104,360,172 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	104,066,078 - 104,360,094 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	109,724,812 - 110,012,432 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	107,923,985 - 108,211,619 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	105,766,682 - 106,054,310 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	111,968,568 - 112,265,623 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	111,970,288 - 111,984,572 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	111,359,492 - 111,611,861 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	108,526,665 - 108,559,580 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	108,546,130 - 108,650,112 (-)	NCBI
Celera	8	103,441,328 - 103,731,916 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

TMEM108
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	133,038,391 - 133,397,775 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	133,038,391 - 133,397,775 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	132,757,235 - 133,116,619 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	134,239,943 - 134,597,748 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	131,182,649 - 131,543,167 (+)	NCBI		Celera
Cytogenetic Map	3	q22.1	NCBI
HuRef	3	130,137,369 - 130,497,019 (+)	NCBI		HuRef
CHM1_1	3	132,720,187 - 133,079,967 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	135,782,799 - 136,142,525 (+)	NCBI		T2T-CHM13v2.0

Tmem108
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	103,360,135 - 103,639,099 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	103,360,146 - 103,639,036 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	103,482,936 - 103,761,900 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	103,482,947 - 103,761,837 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	103,385,266 - 103,664,167 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	103,342,589 - 103,619,967 (-)	NCBI		MGSCv36	mm8
Celera	9	103,034,734 - 103,314,283 (-)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI
cM Map	9	55.47	NCBI

Tmem108
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955501	5,147,375 - 5,468,417 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955501	5,148,821 - 5,475,073 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM108
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	3	130,988,111 - 131,350,787 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	130,105,824 - 130,468,122 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	137,581,678 - 137,944,660 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	137,775,339 - 137,944,660 (+)	Ensembl	panpan1.1		panPan2

TMEM108
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	29,992,038 - 30,331,791 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	29,992,021 - 30,396,840 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	29,967,097 - 30,310,435 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	30,506,730 - 30,851,144 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	30,506,730 - 30,849,923 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	30,201,891 - 30,545,052 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	30,259,585 - 30,603,127 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	30,506,960 - 30,850,288 (+)	NCBI		UU_Cfam_GSD_1.0

Tmem108
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	69,566,242 - 69,869,313 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	6,326,702 - 6,629,898 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936529	6,326,775 - 6,629,247 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM108
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	74,180,198 - 74,555,928 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	74,524,122 - 74,556,327 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	81,988,526 - 82,020,540 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM108
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	56,921,064 - 57,248,199 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	56,921,069 - 57,200,901 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	29,907,018 - 30,234,916 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem108
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	9,522,166 - 9,683,365 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	9,314,308 - 9,683,324 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tmem108
1736 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	28
Count of miRNA genes:	26
Interacting mature miRNAs:	28
Transcripts:	ENSRNOT00000014519
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	46531639	119088626	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	8	46531639	119088626	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	8	46531639	119088626	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088626	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	51351728	107062046	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	61290298	119084929	Rat
631653	Bp125	Blood pressure QTL 125	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	66142385	111142385	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	69349194	112783834	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	70513503	118219066	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	71888757	116888757	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	71888757	116888757	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	71888757	116888757	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	71888757	116888757	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	73473045	118473045	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	76468691	121468691	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	82460758	122812818	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	89265192	114019816	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	93535351	123900184	Rat
1358893	Bp263	Blood pressure QTL 263	5.01		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
1358903	Bp252	Blood pressure QTL 252	7	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
738014	Anxrr15	Anxiety related response QTL 15	3.6	0.005	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	95718998	123900184	Rat
2300182	Bmd56	Bone mineral density QTL 56	5.4		femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	95718998	123900184	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	100149864	120994388	Rat
631217	Activ1	Activity QTL 1	15.9		voluntary movement trait (VT:0003491)	number of photobeam interruptions in an experimental apparatus (CMO:0001517)	8	102370617	108923645	Rat

Markers in Region

D8Rat12

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	104,215,934 - 104,216,130 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	112,120,077 - 112,120,272	NCBI	Rnor6.0
Rnor_5.0	8	111,508,677 - 111,508,872	UniSTS	Rnor5.0
RGSC_v3.4	8	108,654,472 - 108,654,668	RGD	RGSC3.4
RGSC_v3.4	8	108,654,473 - 108,654,668	UniSTS	RGSC3.4
RGSC_v3.1	8	108,673,928 - 108,674,123	RGD
Celera	8	103,591,244 - 103,591,439	UniSTS
RH 3.4 Map	8	1162.9	UniSTS
RH 3.4 Map	8	1162.9	RGD
RH 2.0 Map	8	863.6	RGD
SHRSP x BN Map	8	66.31	RGD
FHH x ACI Map	8	72.4099	RGD

D8Rat123

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	104,073,095 - 104,073,311 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	111,975,586 - 111,975,801	NCBI	Rnor6.0
Rnor_5.0	8	111,366,510 - 111,366,725	UniSTS	Rnor5.0
RGSC_v3.4	8	108,532,196 - 108,532,412	RGD	RGSC3.4
RGSC_v3.4	8	108,532,197 - 108,532,412	UniSTS	RGSC3.4
RGSC_v3.1	8	108,551,651 - 108,552,036	RGD
Celera	8	103,448,519 - 103,448,734	UniSTS
SHRSP x BN Map	8	66.27	RGD
SHRSP x BN Map	8	66.27	UniSTS
Cytogenetic Map	8	q32	UniSTS

242D11L2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	104,078,275 - 104,078,523 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	75,803,182 - 75,803,455 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	78,185,196 - 78,185,468	NCBI	Rnor6.0
Rnor_6.0	8	111,980,753 - 111,981,000	NCBI	Rnor6.0
Rnor_5.0	5	82,306,992 - 82,307,264	UniSTS	Rnor5.0
Rnor_5.0	8	111,371,321 - 111,371,568	UniSTS	Rnor5.0
RGSC_v3.4	5	79,347,058 - 79,347,330	UniSTS	RGSC3.4
Celera	5	74,745,256 - 74,745,528	UniSTS
Cytogenetic Map	5	q24	UniSTS
Cytogenetic Map	8	q32	UniSTS

RH135151

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	104,169,204 - 104,169,418 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	112,071,877 - 112,072,090	NCBI	Rnor6.0
Rnor_5.0	8	111,462,445 - 111,462,658	UniSTS	Rnor5.0
Celera	8	103,544,526 - 103,544,739	UniSTS
RH 3.4 Map	8	1162.9	UniSTS

R74726

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	104,067,695 - 104,067,888 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	111,970,186 - 111,970,378	NCBI	Rnor6.0
Rnor_5.0	8	111,361,110 - 111,361,302	UniSTS	Rnor5.0
RGSC_v3.4	8	108,526,797 - 108,526,989	UniSTS	RGSC3.4
Cytogenetic Map	8	q32	UniSTS

BE095508

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	104,317,729 - 104,317,888 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	112,222,224 - 112,222,382	NCBI	Rnor6.0
Rnor_5.0	8	111,610,824 - 111,610,982	UniSTS	Rnor5.0
RGSC_v3.4	8	108,756,616 - 108,756,774	UniSTS	RGSC3.4
Celera	8	103,692,770 - 103,692,928	UniSTS
RH 3.4 Map	8	1162.9	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		18	2	2		2			56		17
Low	1	18	18	10		10			18	33	20	5
Below cutoff	2	7	34	26	18	26	5	8		2	2	6	5

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001399273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008757857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082605	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001844756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000014519 ⟹ ENSRNOP00000014520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	104,067,581 - 104,360,094 (-)	Ensembl
Rnor_6.0 Ensembl	8	111,970,288 - 111,984,572 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103760 ⟹ ENSRNOP00000090252

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	104,067,678 - 104,360,065 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104880 ⟹ ENSRNOP00000094794

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	104,066,078 - 104,360,060 (-)	Ensembl

RefSeq Acc Id:

NM_001399273 ⟹ NP_001386202

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,360,094 (-)	NCBI

RefSeq Acc Id:

XM_008766590 ⟹ XP_008764812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,360,172 (-)	NCBI
Rnor_6.0	8	111,968,568 - 112,265,623 (-)	NCBI

Sequence:

show sequence

CGGTCGGAGGGGAGCCCGCGGGGGCCGGAGGGGCGAAGGAGCGAGAGCGCGAGTGCGCGTGCGC
GAGCGGCGGGGCTTTCTCCGGAGCCGTCGGAGGGAGCCGGAGCGCTTCTCCCGAGATCGCTTAG
CTGTGGTCCAGCATGCAGAAGTGAGCGTGTGGTGAAAGGCAGCAGACCCAATGGGTTGCGAGGA
TGTAAGAGTGTTTGAAGGCTTCCACACCCTCTCCTCCAGGGCAGAATCATGAATAAACTGGAGG
ACAAGCAGGACCAGATGATACCATGAAGAGAAGTTTACAGGCCCTCTATTGCCAACTGTTAAAG
ACTGTGTTCTGGGAAGCAGTTCCCAGTGGAGTCATGGACCTCATCAGTCTGGCTGTTGAACCCG
TGATCTCCGGACATTTCTGGAAGCCACCAGGCTTTCTCCTAACCTTGGCACTGACCAAAGCACT
GGTACTCGCCGTCCAGGGACCATCTCCCAGGGAATCTCTGCAGACCCTCCCCTCAGGCAGCCCC
CCAGGCACCATGGTGACAGCAACTCACAGCCCTACCAGACTCTCCTCTGTGATGACCCTGAGCC
CTAAACCTGATGGCCGCTCATCACAGGCTGCAGCTACTATGGAAACGACAGTATCTCATCCAGA
AGGGCACCCTCCCACAGACACTGTGTCCACAGTGATGGTGACAGCTGCCGTCCCCCATCCTGAA
AGCCCTCTGCCCACAGGTTCCCCTCCAGCTGCCATGGCAACCACATCGTCCCACTCAGAGAGCC
GCCCCCCAGGGGATGATGCCCCTGCCGCCACCACCCTGCCAACAAAGCCAGCAGGAACCACCAC
CCGCCCCACAGTGTCCCCACGGGTCCCAACTCGTAGGCCCCCCAGGCCCCCAGGCTCTTCCAGG
AAGGGGACTGGTGGCTCGTCTCGCACTTTCCCACTTGTACCCGGTGGCCACTCAGCAAGGAAGG
AAAGCCAGAGGGGACGAAATCAGAGCTCAACACATCTGGGGCCGAAGCGTCCTCTGGGGAAGAT
ATTCCAAATCTACAAAGGTAACTTTACGGGGTCTGTGGAGCCAGACCCCTCTGCTCTCACTCCC
AGGACCCCACTCGGGGGCTACTTCTCTTCGACACAGCCTCAGACAGTATCTCCAGCTACAGGAC
CCAGAAGCACCTCGTGGGTGCCCCCCACAACTTCCCTGGTACCTGCAACGGACAAGCCAGACCT
TACCAGAGCCAACCAGGGGAGTGGCCCCACATTTACCAGCCCAGGAGGGGAGCCAGATTGCNCA
GCTTCAGGTGCCCCTGACAGTACACAGCCCGCCCCAGTGCCTTCTCGGAGCCCTCATGGTGACG
TGCAAGACAGCTCCAGCCACAGTGACTCTTGGCTTGCTGTCACCCCTGACACTGACAGACCCAC
GTCTGCCAGCTCCAGGGTCTTCACGGCTGCCACGGGGCCCACCCAGGCTGCCTTCGATGCCAGT
GTCTCAGCCCCTCCCCCGGGCATCCCTCAGGGACCATCTGCAACCCCTCCGGCCCCAGCCTGGC
CCTCTGGGGTCTCAGAAAGTATTGTTTCTCCAGCAAAGGAAGAGGCTGAGGCCTCCCCCACAAC
CACCGACAGGGGGCCCAGACCGCTTTCCACAGTGCCGTCTACAGCCACGGGCAACTTCCTCAAC
CGCCTGGTCCCCGCGGGGACCTGGAAGCCGGGAACTGTGGCCAACATCTCCCATGTGGCTGAAG
GGGACAAGCCCCAGCACAGAGCCACCATCTGCCTGAGCAAGATGGATATTGCCTGGGTCATCTT
GGCCATCAGTGTGCCCATCTCTTCCTGCTCCGTCCTGTTGACAGTGTGCTGTATGAGAAGGAAG
AAGAAGACAGCCAACCCTGAGAACAACCTGAGCTACTGGAACAACGCCATCACCATGGACTACT
TCAACAGACATGCCGTGGAGCTCCCGAGGGAGATCCAGTCCCTAGAGACCTCAGAGGACCAGCT
CTCAGAGCCCCGCTCCCCAGCCAATGGCGACTACCGAGACACTGGGATGGTCCTCGTGAACCCC
TTCTGCCAGGAAACACTGTTCGTGGGAAACGACCAAGTTTCTGAGATCTAGATGCAGCAGCCTC
CGCTTTGCCACTCCCTATTTTTGTCCCTAAATTATAAATATACAAATATATATATTATAAATAT
AACCTTTGTGTAACCCCGACTTAATAAGAGACATTTTCAGCTTTTTTTCTTAAGAATTGTCAAC
ATCTTTTTTACAAGTGTGGTTTAAAAAAAAAATTTACAGAACGACCCCATGGCTTTATAAAATA
AAGGTATTTCTAAGCAAAGCGGCTGCACCAATTGCTTCTCTTAACTGATCTGGGCATGGAGAGG
TTCCAGGAGCCCTGGGCAGGTGAGGAAAGAGACCAGTCTCCCTCGGAAGCTGAACGTTAGTGTG
GCCAAATGAGTGGCCATCTGTGTGGTCTTGGTGCTCTGGTTCCCTTGACTCAGTGTGCCCACCT
GCCCTGTCTTTTTGTATTTTTTCCCCTAGTGGTGGGAACTGGGGCACCAGGGCAGAAGACTCAG
GCAAGTATACAAAACTGTCTTGTCAGCCTGGAGCCTCACTCTACCGTCACTGAATGTCAGTGAA
AGCCATCAGGAGGCCCCGGCCCCCTTTTCTGACCCCACAGATGTTCCCACCATGCTAGAAGAAA
CAGGACTGCTGCCTTTGTCTGGCAGAAAAGTGGTCCCTAGAAACCCTTCTCAGCATCCCTTCCA
GCACCACACCTGCCTCGGACCCCATGCTTCCTCCCTTCCTAGAGGACAGACGCACATCTCAGCC
TAGGGGCTGTGCAGCTCCTACTTGCCCTTCCCTGTCCAGGGGTCCGGTGTTTGTTGGGATTCTC
TACTGCTTTCTCCAAAGGCAATGATCTTGTGCCCCTGAGAAACAGGTTTATCTAGAAAGCCTTG
TGGTGTAGAACTATTTTTTTTAACCTCCCCCCATTAAATCTTTAAAGAAAGAGATTGCCAAATG
AATCACTTGAAAGAAGTGCCACTCTGTCTCCAGGCAGAAGCACGGCAGACCTGCCCACAAACTC
GCCATGCCATCCTCTTTCACTGTCCCCTGCCTCCCCTTCTCTTGTTCCCCTGGGTCCAGGTCCA
GCTGCCATCCCAGCCCACACTGTACCCAGTTTGACCAACAAGGAACAGACTCTCAGAACCCCAA
GAGGGGCTTTCTGGGTCCAATCGCTTTTCTCTGTTACTTTCCTAACCCACCATGGCTAGGGATT
TAACTTCAACCCCTCTCCCCTTCTCTAAAAGAAAAATAGTTTGATAGTATATTTTGAATATAGA
TGTTCTTATTATCAGATTGGAGCTTGAATTTGACTGTTGATTCGATGTCTGTGTTGTTGCTGTG
GTCTTCTTTATCATAACTGCCTCTTTTCTTCCATCCCCCCGTTCCAAAAGAACGACGGCCTTCA
AAACTCATGTGTGTTCTCAATGTTCTATGGACCTACCTAACACGAGTCTGCTTGTCTCTCTTCA
AAGACTTCAACCCACAAAGAAGCAGGTTAAATGTTGTGCCGAGATCTTGCTCTCTACCATGTTG
CTGTCTGACCTTAACCTTATCATGATATTTCTGTTAGCTACTGCATTGAATATGCCAATGTGTG
TGAGTATGTATTGAGAAAAACATGTTTGTAAAGTAAAATTTATATATAATATATGTCATCACAG
ATACATATGTTATATATATACATTTGTGGATGTATGACTTATTTTCCGTATCCACAGAATTCAG
CTACCATGTATATATAAATAAACTTATTTTATTACCCAGAGGA

hide sequence

RefSeq Acc Id:

XM_039082589 ⟹ XP_038938517

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,360,172 (-)	NCBI

RefSeq Acc Id:

XM_039082590 ⟹ XP_038938518

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,280,912 (-)	NCBI

RefSeq Acc Id:

XM_039082592 ⟹ XP_038938520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,360,134 (-)	NCBI

RefSeq Acc Id:

XM_039082593 ⟹ XP_038938521

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,329,786 (-)	NCBI

RefSeq Acc Id:

XM_039082594 ⟹ XP_038938522

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,280,912 (-)	NCBI

RefSeq Acc Id:

XM_039082595 ⟹ XP_038938523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,360,121 (-)	NCBI

RefSeq Acc Id:

XM_039082596 ⟹ XP_038938524

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,360,172 (-)	NCBI

RefSeq Acc Id:

XM_039082597 ⟹ XP_038938525

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,360,172 (-)	NCBI

RefSeq Acc Id:

XM_039082598 ⟹ XP_038938526

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,360,119 (-)	NCBI

RefSeq Acc Id:

XM_039082599 ⟹ XP_038938527

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,280,908 (-)	NCBI

RefSeq Acc Id:

XM_039082601 ⟹ XP_038938529

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,360,172 (-)	NCBI

RefSeq Acc Id:

XM_039082603 ⟹ XP_038938531

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,280,905 (-)	NCBI

RefSeq Acc Id:

XM_039082604 ⟹ XP_038938532

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,360,133 (-)	NCBI

RefSeq Acc Id:

XM_039082605 ⟹ XP_038938533

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,329,780 (-)	NCBI

RefSeq Acc Id:

XM_039082606 ⟹ XP_038938534

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,280,905 (-)	NCBI

RefSeq Acc Id:

XM_039082607 ⟹ XP_038938535

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,066,081 - 104,360,120 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001386202	(Get FASTA)	NCBI Sequence Viewer
	XP_008764812	(Get FASTA)	NCBI Sequence Viewer
	XP_038938517	(Get FASTA)	NCBI Sequence Viewer
	XP_038938518	(Get FASTA)	NCBI Sequence Viewer
	XP_038938520	(Get FASTA)	NCBI Sequence Viewer
	XP_038938521	(Get FASTA)	NCBI Sequence Viewer
	XP_038938522	(Get FASTA)	NCBI Sequence Viewer
	XP_038938523	(Get FASTA)	NCBI Sequence Viewer
	XP_038938524	(Get FASTA)	NCBI Sequence Viewer
	XP_038938525	(Get FASTA)	NCBI Sequence Viewer
	XP_038938526	(Get FASTA)	NCBI Sequence Viewer
	XP_038938527	(Get FASTA)	NCBI Sequence Viewer
	XP_038938529	(Get FASTA)	NCBI Sequence Viewer
	XP_038938531	(Get FASTA)	NCBI Sequence Viewer
	XP_038938532	(Get FASTA)	NCBI Sequence Viewer
	XP_038938533	(Get FASTA)	NCBI Sequence Viewer
	XP_038938534	(Get FASTA)	NCBI Sequence Viewer
	XP_038938535	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL77372	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_008764812 ⟸ XM_008766590
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ALT4 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKRSLQALYCQLLKTVFWEAVPSGVMDLISLAVEPVISGHFWKPPGFLLTLALTKALVLAVQGP SPRESLQTLPSGSPPGTMVTATHSPTRLSSVMTLSPKPDGRSSQAAATMETTVSHPEGHPPTDT VSTVMVTAAVPHPESPLPTGSPPAAMATTSSHSESRPPGDDAPAATTLPTKPAGTTTRPTVSPR VPTRRPPRPPGSSRKGTGGSSRTFPLVPGGHSARKESQRGRNQSSTHLGPKRPLGKIFQIYKGN FTGSVEPDPSALTPRTPLGGYFSSTQPQTVSPATGPRSTSWVPPTTSLVPATDKPDLTRANQGS GPTFTSPGGEPDCXASGAPDSTQPAPVPSRSPHGDVQDSSSHSDSWLAVTPDTDRPTSASSRVF TAATGPTQAAFDASVSAPPPGIPQGPSATPPAPAWPSGVSESIVSPAKEEAEASPTTTDRGPRP LSTVPSTATGNFLNRLVPAGTWKPGTVANISHVAEGDKPQHRATICLSKMDIAWVILAISVPIS SCSVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPREIQSLETSEDQLSEPRSPA NGDYRDTGMVLVNPFCQETLFVGNDQVSEI hide sequence

RefSeq Acc Id:

ENSRNOP00000014520 ⟸ ENSRNOT00000014519

RefSeq Acc Id:	XP_038938529 ⟸ XM_039082601
- Peptide Label:	isoform X3
- UniProtKB:	F1M8M1 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938517 ⟸ XM_039082589
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ALT4 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938524 ⟸ XM_039082596
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GI14 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938525 ⟸ XM_039082597
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GI14 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938520 ⟸ XM_039082592
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ALT4 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938532 ⟸ XM_039082604
- Peptide Label:	isoform X3
- UniProtKB:	F1M8M1 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938523 ⟸ XM_039082595
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ALT4 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938535 ⟸ XM_039082607
- Peptide Label:	isoform X3
- UniProtKB:	F1M8M1 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938526 ⟸ XM_039082598
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GI14 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938521 ⟸ XM_039082593
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ALT4 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938533 ⟸ XM_039082605
- Peptide Label:	isoform X3
- UniProtKB:	F1M8M1 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938522 ⟸ XM_039082594
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ALT4 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938518 ⟸ XM_039082590
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ALT4 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938527 ⟸ XM_039082599
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GI14 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938534 ⟸ XM_039082606
- Peptide Label:	isoform X3
- UniProtKB:	F1M8M1 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938531 ⟸ XM_039082603
- Peptide Label:	isoform X3
- UniProtKB:	F1M8M1 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000090252 ⟸ ENSRNOT00000103760

RefSeq Acc Id:

ENSRNOP00000094794 ⟸ ENSRNOT00000104880

RefSeq Acc Id:	NP_001386202 ⟸ NM_001399273
- Peptide Label:	precursor
- UniProtKB:	F1M8M1 (UniProtKB/TrEMBL), A6I2K3 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M8M1-F1-model_v2	AlphaFold	F1M8M1	1-559	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311530	AgrOrtholog
BioCyc Gene	G2FUF-29309	BioCyc
Ensembl Genes	ENSRNOG00000010911	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000014520	ENTREZGENE
	ENSRNOP00000014520.8	UniProtKB/TrEMBL
	ENSRNOP00000090252	ENTREZGENE
	ENSRNOP00000090252.1	UniProtKB/TrEMBL
	ENSRNOP00000094794	ENTREZGENE
	ENSRNOP00000094794.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014519	ENTREZGENE
	ENSRNOT00000014519.8	UniProtKB/TrEMBL
	ENSRNOT00000103760	ENTREZGENE
	ENSRNOT00000103760.1	UniProtKB/TrEMBL
	ENSRNOT00000104880	ENTREZGENE
	ENSRNOT00000104880.1	UniProtKB/TrEMBL
InterPro	TMEM108	UniProtKB/TrEMBL
NCBI Gene	300967	ENTREZGENE
PANTHER	PTHR28673	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 108	UniProtKB/TrEMBL
Pfam	TMEM108	UniProtKB/TrEMBL
PhenoGen	Tmem108	PhenoGen
UniProt	A0A8I6ALT4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GI14	ENTREZGENE, UniProtKB/TrEMBL
	A6I2K3	ENTREZGENE, UniProtKB/TrEMBL
	F1M8M1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-27	Tmem108	transmembrane protein 108	RGD1311530_predicted	similar to mucin 7, salivary (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1311530_predicted	similar to mucin 7, salivary (predicted)	LOC300967_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC300967_predicted	similar to mucin 7, salivary (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar