Tmem108 (transmembrane protein 108) - Rat Genome Database

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Gene: Tmem108 (transmembrane protein 108) Rattus norvegicus
Analyze
Symbol: Tmem108
Name: transmembrane protein 108
RGD ID: 1311530
Description: Predicted to be involved in several processes, including cellular response to brain-derived neurotrophic factor stimulus; nervous system development; and regulation of signal transduction. Predicted to be located in several cellular components, including axon; endosome; and postsynaptic density. Orthologous to human TMEM108 (transmembrane protein 108); INTERACTS WITH bisphenol A; gentamycin; paracetamol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC300967; RGD1311530; similar to mucin 7, salivary
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28104,066,081 - 104,360,172 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl8104,066,078 - 104,360,094 (-)Ensembl
Rnor_6.08111,968,568 - 112,265,623 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,970,288 - 111,984,572 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08111,359,492 - 111,611,861 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,526,665 - 108,559,580 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18108,546,130 - 108,650,112 (-)NCBI
Celera8103,441,328 - 103,731,916 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:17287360   PMID:21849472   PMID:27605705   PMID:28096412  


Genomics

Comparative Map Data
Tmem108
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28104,066,081 - 104,360,172 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl8104,066,078 - 104,360,094 (-)Ensembl
Rnor_6.08111,968,568 - 112,265,623 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,970,288 - 111,984,572 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08111,359,492 - 111,611,861 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,526,665 - 108,559,580 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18108,546,130 - 108,650,112 (-)NCBI
Celera8103,441,328 - 103,731,916 (-)NCBICelera
Cytogenetic Map8q32NCBI
TMEM108
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,038,391 - 133,397,775 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3133,038,391 - 133,397,775 (+)EnsemblGRCh38hg38GRCh38
GRCh373132,757,235 - 133,116,619 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363134,239,943 - 134,597,748 (+)NCBINCBI36hg18NCBI36
Celera3131,182,649 - 131,543,167 (+)NCBI
Cytogenetic Map3q22.1NCBI
HuRef3130,137,369 - 130,497,019 (+)NCBIHuRef
CHM1_13132,720,187 - 133,079,967 (+)NCBICHM1_1
T2T-CHM13v2.03135,782,799 - 136,142,525 (+)NCBI
Tmem108
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399103,360,135 - 103,639,099 (-)NCBIGRCm39mm39
GRCm39 Ensembl9103,360,146 - 103,639,036 (-)Ensembl
GRCm389103,482,936 - 103,761,900 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,482,947 - 103,761,837 (-)EnsemblGRCm38mm10GRCm38
MGSCv379103,385,266 - 103,664,167 (-)NCBIGRCm37mm9NCBIm37
MGSCv369103,342,589 - 103,619,967 (-)NCBImm8
Celera9103,034,734 - 103,314,283 (-)NCBICelera
Cytogenetic Map9F1NCBI
Tmem108
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555015,147,375 - 5,468,417 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555015,148,821 - 5,475,073 (-)NCBIChiLan1.0ChiLan1.0
TMEM108
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13137,581,678 - 137,944,660 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3137,775,339 - 137,944,660 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03130,105,824 - 130,468,122 (+)NCBIMhudiblu_PPA_v0panPan3
TMEM108
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12329,992,038 - 30,331,791 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2329,992,021 - 30,396,840 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2329,967,097 - 30,310,435 (+)NCBI
ROS_Cfam_1.02330,506,730 - 30,851,144 (+)NCBI
ROS_Cfam_1.0 Ensembl2330,506,730 - 30,849,923 (+)Ensembl
UMICH_Zoey_3.12330,201,891 - 30,545,052 (+)NCBI
UNSW_CanFamBas_1.02330,259,585 - 30,603,127 (+)NCBI
UU_Cfam_GSD_1.02330,506,960 - 30,850,288 (+)NCBI
Tmem108
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560269,566,242 - 69,869,313 (+)NCBI
SpeTri2.0NW_0049365296,326,775 - 6,629,247 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM108
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1374,180,198 - 74,555,928 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11374,524,122 - 74,556,327 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21381,988,526 - 82,020,540 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM108
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,921,064 - 57,248,199 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1556,921,069 - 57,200,901 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604129,907,018 - 30,234,916 (-)NCBIVero_WHO_p1.0
Tmem108
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247309,522,166 - 9,683,365 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247309,314,308 - 9,683,324 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D8Rat12  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28104,215,934 - 104,216,130 (+)MAPPERmRatBN7.2
Rnor_6.08112,120,077 - 112,120,272NCBIRnor6.0
Rnor_5.08111,508,677 - 111,508,872UniSTSRnor5.0
RGSC_v3.48108,654,472 - 108,654,668RGDRGSC3.4
RGSC_v3.48108,654,473 - 108,654,668UniSTSRGSC3.4
RGSC_v3.18108,673,928 - 108,674,123RGD
Celera8103,591,244 - 103,591,439UniSTS
RH 3.4 Map81162.9UniSTS
RH 3.4 Map81162.9RGD
RH 2.0 Map8863.6RGD
SHRSP x BN Map866.31RGD
FHH x ACI Map872.4099RGD
D8Rat123  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28104,073,095 - 104,073,311 (+)MAPPERmRatBN7.2
Rnor_6.08111,975,586 - 111,975,801NCBIRnor6.0
Rnor_5.08111,366,510 - 111,366,725UniSTSRnor5.0
RGSC_v3.48108,532,196 - 108,532,412RGDRGSC3.4
RGSC_v3.48108,532,197 - 108,532,412UniSTSRGSC3.4
RGSC_v3.18108,551,651 - 108,552,036RGD
Celera8103,448,519 - 103,448,734UniSTS
SHRSP x BN Map866.27RGD
SHRSP x BN Map866.27UniSTS
Cytogenetic Map8q32UniSTS
242D11L2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28104,078,275 - 104,078,523 (+)MAPPERmRatBN7.2
mRatBN7.2575,803,182 - 75,803,455 (+)MAPPERmRatBN7.2
Rnor_6.0578,185,196 - 78,185,468NCBIRnor6.0
Rnor_6.08111,980,753 - 111,981,000NCBIRnor6.0
Rnor_5.0582,306,992 - 82,307,264UniSTSRnor5.0
Rnor_5.08111,371,321 - 111,371,568UniSTSRnor5.0
RGSC_v3.4579,347,058 - 79,347,330UniSTSRGSC3.4
Celera574,745,256 - 74,745,528UniSTS
Cytogenetic Map5q24UniSTS
Cytogenetic Map8q32UniSTS
RH135151  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28104,169,204 - 104,169,418 (+)MAPPERmRatBN7.2
Rnor_6.08112,071,877 - 112,072,090NCBIRnor6.0
Rnor_5.08111,462,445 - 111,462,658UniSTSRnor5.0
Celera8103,544,526 - 103,544,739UniSTS
RH 3.4 Map81162.9UniSTS
R74726  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28104,067,695 - 104,067,888 (+)MAPPERmRatBN7.2
Rnor_6.08111,970,186 - 111,970,378NCBIRnor6.0
Rnor_5.08111,361,110 - 111,361,302UniSTSRnor5.0
RGSC_v3.48108,526,797 - 108,526,989UniSTSRGSC3.4
Cytogenetic Map8q32UniSTS
BE095508  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28104,317,729 - 104,317,888 (+)MAPPERmRatBN7.2
Rnor_6.08112,222,224 - 112,222,382NCBIRnor6.0
Rnor_5.08111,610,824 - 111,610,982UniSTSRnor5.0
RGSC_v3.48108,756,616 - 108,756,774UniSTSRGSC3.4
Celera8103,692,770 - 103,692,928UniSTS
RH 3.4 Map81162.9UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088624Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8102370617108923645Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:26
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000014519
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 18 2 2 2 56 17
Low 1 18 18 10 10 18 33 20 5
Below cutoff 2 7 34 26 18 26 5 8 2 2 6 5

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001399273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008757857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000014519   ⟹   ENSRNOP00000014520
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8104,067,581 - 104,360,094 (-)Ensembl
Rnor_6.0 Ensembl8111,970,288 - 111,984,572 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103760   ⟹   ENSRNOP00000090252
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8104,067,678 - 104,360,065 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104880   ⟹   ENSRNOP00000094794
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8104,066,078 - 104,360,060 (-)Ensembl
RefSeq Acc Id: XM_008766590   ⟹   XP_008764812
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,360,172 (-)NCBI
Rnor_6.08111,968,568 - 112,265,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039082589   ⟹   XP_038938517
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,360,172 (-)NCBI
RefSeq Acc Id: XM_039082590   ⟹   XP_038938518
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,280,912 (-)NCBI
RefSeq Acc Id: XM_039082592   ⟹   XP_038938520
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,360,134 (-)NCBI
RefSeq Acc Id: XM_039082593   ⟹   XP_038938521
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,329,786 (-)NCBI
RefSeq Acc Id: XM_039082594   ⟹   XP_038938522
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,280,912 (-)NCBI
RefSeq Acc Id: XM_039082595   ⟹   XP_038938523
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,360,121 (-)NCBI
RefSeq Acc Id: XM_039082596   ⟹   XP_038938524
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,360,172 (-)NCBI
RefSeq Acc Id: XM_039082597   ⟹   XP_038938525
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,360,172 (-)NCBI
RefSeq Acc Id: XM_039082598   ⟹   XP_038938526
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,360,119 (-)NCBI
RefSeq Acc Id: XM_039082599   ⟹   XP_038938527
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,280,908 (-)NCBI
RefSeq Acc Id: XM_039082600   ⟹   XP_038938528
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,360,172 (-)NCBI
RefSeq Acc Id: XM_039082601   ⟹   XP_038938529
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,360,172 (-)NCBI
RefSeq Acc Id: XM_039082603   ⟹   XP_038938531
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,280,905 (-)NCBI
RefSeq Acc Id: XM_039082604   ⟹   XP_038938532
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,360,133 (-)NCBI
RefSeq Acc Id: XM_039082605   ⟹   XP_038938533
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,329,780 (-)NCBI
RefSeq Acc Id: XM_039082606   ⟹   XP_038938534
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,280,905 (-)NCBI
RefSeq Acc Id: XM_039082607   ⟹   XP_038938535
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28104,066,081 - 104,360,120 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_008764812   ⟸   XM_008766590
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000014520   ⟸   ENSRNOT00000014519
RefSeq Acc Id: XP_038938529   ⟸   XM_039082601
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038938517   ⟸   XM_039082589
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938524   ⟸   XM_039082596
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038938528   ⟸   XM_039082600
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038938525   ⟸   XM_039082597
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038938520   ⟸   XM_039082592
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938532   ⟸   XM_039082604
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038938523   ⟸   XM_039082595
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938535   ⟸   XM_039082607
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038938526   ⟸   XM_039082598
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038938521   ⟸   XM_039082593
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938533   ⟸   XM_039082605
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038938522   ⟸   XM_039082594
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938518   ⟸   XM_039082590
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938527   ⟸   XM_039082599
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038938534   ⟸   XM_039082606
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038938531   ⟸   XM_039082603
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000090252   ⟸   ENSRNOT00000103760
RefSeq Acc Id: ENSRNOP00000094794   ⟸   ENSRNOT00000104880

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M8M1-F1-model_v2 AlphaFold F1M8M1 1-559 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311530 AgrOrtholog
BioCyc Gene G2FUF-29309 BioCyc
Ensembl Genes ENSRNOG00000010911 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000014520 ENTREZGENE
  ENSRNOP00000014520.8 UniProtKB/TrEMBL
  ENSRNOP00000090252 ENTREZGENE
  ENSRNOP00000090252.1 UniProtKB/TrEMBL
  ENSRNOP00000094794 ENTREZGENE
  ENSRNOP00000094794.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014519 ENTREZGENE
  ENSRNOT00000014519.8 UniProtKB/TrEMBL
  ENSRNOT00000103760 ENTREZGENE
  ENSRNOT00000103760.1 UniProtKB/TrEMBL
  ENSRNOT00000104880 ENTREZGENE
  ENSRNOT00000104880.1 UniProtKB/TrEMBL
InterPro TMEM108 UniProtKB/TrEMBL
NCBI Gene 300967 ENTREZGENE
PANTHER PTHR28673 UniProtKB/TrEMBL
Pfam TMEM108 UniProtKB/TrEMBL
PhenoGen Tmem108 PhenoGen
UniProt A0A8I6ALT4_RAT UniProtKB/TrEMBL
  A0A8I6GI14_RAT UniProtKB/TrEMBL
  F1M8M1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-27 Tmem108  transmembrane protein 108  RGD1311530_predicted  similar to mucin 7, salivary (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1311530_predicted  similar to mucin 7, salivary (predicted)  LOC300967_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC300967_predicted  similar to mucin 7, salivary (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL