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ONTOLOGY REPORT - ANNOTATIONS

Term:collagen fibril organization
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Accession:GO:0030199 term browser browse the term
Definition:Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix.
Synonyms:exact_synonym: collagen fibril organisation;   fibrillar collagen organization
 never_in_taxon: NCBITaxon:4751 ! Fungi


show annotations for term's descendants           Sort by:
collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856465 (PMID:3070812)		 Ensembl
RGD		 PMID:3070812 GO_REF:0000107 NCBI chr 1:132,981,582...133,044,416
Ensembl chr 1:132,981,582...133,043,627 		JBrowse link
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 involved_in ISO MGI:1347346|MGI:2146046 (PMID:29618652) RGD PMID:29618652 NCBI chr 2:60,032,873...60,327,629
Ensembl chr 2:60,032,873...60,327,629 		JBrowse link
G Adamts14 ADAM metallopeptidase with thrombospondin type 1 motif, 14 acts_upstream_of_or_within ISO (PMID:11741898) RGD PMID:11741898 NCBI chr20:29,143,029...29,219,846
Ensembl chr20:29,144,354...29,219,866 		JBrowse link
G Adamts2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 acts_upstream_of_or_within ISO MGI:2388161 (PMID:16556917) RGD PMID:16556917 NCBI chr10:34,920,992...35,126,465
Ensembl chr10:34,921,049...35,123,821 		JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 involved_in ISO MGI:1347346|MGI:2146046 (PMID:29618652) RGD PMID:29618652 NCBI chr 8:90,704,727...90,744,333
Ensembl chr 8:90,704,727...90,744,328 		JBrowse link
G Antxr2 ANTXR cell adhesion molecule 2 acts_upstream_of_or_within ISO MGI:1919164 (PMID:28604699) RGD PMID:28604699 NCBI chr14:11,541,718...11,682,110
Ensembl chr14:11,541,772...11,682,094 		JBrowse link
G Anxa2 annexin A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3028929 (PMID:14702107)		 Ensembl
RGD		 PMID:14702107 GO_REF:0000107 NCBI chr 8:70,105,268...70,141,663
Ensembl chr 8:70,105,253...70,141,658 		JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856097|MGI:1856101|MGI:1856102|MGI:3588774 (PMID:16338116), (PMID:20889), (PMID:4808708), (PMID:8096378), (PMID:8895222) RGD PMID:20889 PMID:4808708 PMID:8096378 PMID:8895222 PMID:16338116 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within TAS
ISO		 MGI:1856399|MGI:88457 (PMID:17029294), (PMID:17683922), (PMID:21467034), (PMID:3070812), (PMID:4100752), (PMID:4110409), (PMID:7859283) RGD PMID:3070812 PMID:4100752 PMID:4110409 PMID:7859283 PMID:17029294 More... RGD:1300046 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Col11a2 collagen type XI alpha 2 chain involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:9188673)
GO_REF:0000033
MGI:2154689 (PMID:10581026), (PMID:11668593)		 RGD
GO_Central		 PMID:9188673 PMID:10581026 PMID:11668593 GO_REF:0000033 NCBI chr20:4,786,932...4,816,598
Ensembl chr20:4,786,929...4,815,985 		JBrowse link
G Col14a1 collagen type XIV alpha 1 chain acts_upstream_of_or_within ISO MGI:3846440 (PMID:22906538) RGD PMID:22906538 NCBI chr 7:86,722,093...86,937,215
Ensembl chr 7:86,722,094...86,937,214 		JBrowse link
G Col18a1 collagen type XVIII alpha 1 chain involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:11,474,104...11,582,593
Ensembl chr20:11,474,104...11,582,593 		JBrowse link
G Col1a1 collagen type I alpha 1 chain involved_in ISO (PMID:14976317), (PMID:15095409), (PMID:17211858), (PMID:18375391) RGD PMID:14976317 PMID:15095409 PMID:17211858 PMID:18375391 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624 		JBrowse link
G Col1a2 collagen type I alpha 2 chain involved_in ISO
IEA		 (PMID:17211858), (PMID:18375391)
GO_REF:0000107		 RGD
Ensembl		 PMID:17211858 PMID:18375391 GO_REF:0000107 NCBI chr 4:32,563,938...32,598,868
Ensembl chr 4:32,563,381...32,598,867 		JBrowse link
G Col27a1 collagen type XXVII alpha 1 chain involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:76,647,302...76,765,989
Ensembl chr 5:76,647,429...76,765,174 		JBrowse link
G Col28a1 collagen type XXVIII alpha 1 chain involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:36,069,980...36,223,128
Ensembl chr 4:36,069,970...36,223,220 		JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within		 ISO
IEA
IBA		 (PMID:1429602)
GO_REF:0000107
GO_REF:0000033
MGI:1857275|MGI:2152978 (PMID:11171689), (PMID:3070812), (PMID:7276808), (PMID:7590256), (PMID:8989518), (PMID:9022054), (PMID:9832566), (PMID:9915573)		 RGD
Ensembl
GO_Central		 PMID:1429602 PMID:3070812 PMID:7276808 PMID:7590256 PMID:8989518 More... GO_REF:0000033 GO_REF:0000107 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in
acts_upstream_of_or_within		 ISO (PMID:7546986), (PMID:9036918)
MGI:1857431 (PMID:9050868)
MGI:1857431|MGI:1860700 (PMID:20587693), (PMID:24820199), (PMID:29551664), (PMID:31655293)		 RGD PMID:7546986 PMID:9036918 PMID:9050868 PMID:20587693 PMID:24820199 More... NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547 		JBrowse link
G Col5a1 collagen type V alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000107
MGI:3664598|MGI:88446 (PMID:15383546), (PMID:16492673), (PMID:17029294), (PMID:21467034)
GO_REF:0000033
(PMID:11278977), (PMID:15095409), (PMID:9683580)		 Ensembl
RGD
GO_Central		 PMID:9683580 PMID:11278977 PMID:15095409 PMID:15383546 PMID:16492673 More... GO_REF:0000033 GO_REF:0000107 NCBI chr 3:11,208,429...11,356,715
Ensembl chr 3:11,208,512...11,354,588 		JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in ISO (PMID:9425231)
(MGI:3047505|PMID:15199158)		 RGD PMID:9425231 PMID:15199158 MGI:3047505 NCBI chr 9:47,448,741...47,598,134
Ensembl chr 9:47,448,736...47,598,154 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO MGI:2153356|MGI:88459 (PMID:25158062), (PMID:28604699) RGD PMID:25158062 PMID:28604699 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597 		JBrowse link
G Comp cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2180787|MGI:5550566 (PMID:19808781), (PMID:24312420), (PMID:26746240)		 Ensembl
RGD		 PMID:19808781 PMID:24312420 PMID:26746240 GO_REF:0000107 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Crtap cartilage associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:114,047,929...114,067,636
Ensembl chr 8:114,047,933...114,067,631 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(MGI:5544856|PMID:23979599)		 Ensembl
UniProt
RGD		 PMID:23979599 GO_REF:0000024 GO_REF:0000107 MGI:5544856 NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 involved_in ISO (MGI:5318020|PMID:19900459) RGD PMID:19900459 MGI:5318020 NCBI chr13:82,193,623...82,318,229
Ensembl chr13:82,195,463...82,317,363 		JBrowse link
G Dpt dermatopontin involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2387341 (PMID:12230512), (PMID:16877395)		 GO_Central
RGD		 PMID:12230512 PMID:16877395 GO_REF:0000033 NCBI chr13:77,123,224...77,151,646
Ensembl chr13:77,123,115...77,151,639 		JBrowse link
G Ero1a endoplasmic reticulum oxidoreductase 1 alpha acts_upstream_of_or_within ISO (PMID:28106121) RGD PMID:28106121 NCBI chr15:18,495,037...18,530,440
Ensembl chr15:18,492,945...18,530,478 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:19850926) RGD PMID:19850926 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 acts_upstream_of_or_within ISO MGI:5432211 (PMID:24777781), (PMID:28206698) RGD PMID:24777781 PMID:28206698 NCBI chr10:85,345,434...85,357,998
Ensembl chr10:85,346,126...85,427,330 		JBrowse link
G Fmod fibromodulin involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr13:45,493,517...45,504,134
Ensembl chr13:45,493,517...45,504,133 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO MGI:1856705 (PMID:10767326) RGD PMID:10767326 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (PMID:10767326) RGD PMID:10767326 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:15539560) RGD PMID:15539560 NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO MGI:2158463 (PMID:10660670) RGD PMID:10660670 NCBI chr 3:16,862,195...16,940,899
Ensembl chr 3:16,862,195...16,940,899 		JBrowse link
G Lox lysyl oxidase involved_in
acts_upstream_of_or_within		 IDA
IMP
IBA
ISO		 GO_REF:0000033
(PMID:26700732)		 GO_Central
RGD		 PMID:26700732 PMID:16804742 PMID:16432278 GO_REF:0000033, RGD:1600668, RGD:1600669 NCBI chr18:45,964,544...45,977,431
Ensembl chr18:45,967,343...46,041,477 		JBrowse link
G Loxl1 lysyl oxidase-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:58,691,763...58,716,365
Ensembl chr 8:58,692,593...58,716,356 		JBrowse link
G Loxl2 lysyl oxidase-like 2 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:21835952)		 UniProt
GO_Central
Ensembl
RGD		 PMID:21835952 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr15:44,683,449...44,773,067
Ensembl chr15:44,683,880...44,773,067 		JBrowse link
G Loxl3 lysyl oxidase-like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:115,540,640...115,556,958
Ensembl chr 4:115,540,685...115,557,466 		JBrowse link
G Loxl4 lysyl oxidase-like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:241,396,183...241,416,385
Ensembl chr 1:241,397,983...241,416,322 		JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 acts_upstream_of_or_within ISO MGI:5007248 (PMID:21606205) RGD PMID:21606205 NCBI chr13:94,970,421...95,012,071
Ensembl chr13:94,970,424...95,011,972 		JBrowse link
G Mkx mohawk homeobox acts_upstream_of_or_within ISO MGI:5287572 (PMID:20696843) RGD PMID:20696843 NCBI chr17:55,077,073...55,156,877
Ensembl chr17:55,077,540...55,156,124 		JBrowse link
G Mmp11 matrix metallopeptidase 11 acts_upstream_of_or_within ISO MGI:2387934 (PMID:18622425) RGD PMID:18622425 NCBI chr20:12,730,846...12,739,629
Ensembl chr20:12,730,836...12,739,628 		JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1857444 (PMID:10383727)		 HGNC-UCL
Ensembl
RGD		 PMID:10383727 GO_REF:0000024 GO_REF:0000107 NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658 		JBrowse link
G Optc opticin involved_in ISO
IBA		 (MGI:6148629|PMID:29323130)
GO_REF:0000033		 RGD
GO_Central		 PMID:29323130 GO_REF:0000033 MGI:6148629 NCBI chr13:45,353,954...45,368,254
Ensembl chr13:45,355,148...45,365,237 		JBrowse link
G P3h1 prolyl 3-hydroxylase 1 acts_upstream_of_or_within ISO MGI:4830452 (PMID:20363744) RGD PMID:20363744 NCBI chr 5:132,841,868...132,856,664
Ensembl chr 5:132,841,928...132,856,659 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(MGI:5779580|PMID:27119146)		 UniProt
GO_Central
Ensembl
RGD		 PMID:27119146 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:5779580 NCBI chr10:85,338,158...85,345,108
Ensembl chr10:85,338,161...85,345,093 		JBrowse link
G P4ha1 prolyl 4-hydroxylase subunit alpha 1 acts_upstream_of_or_within ISO MGI:3706369 (PMID:17135260) RGD PMID:17135260 NCBI chr20:27,302,046...27,352,098
Ensembl chr20:27,302,141...27,352,786 		JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3620600|MGI:3620603 (PMID:16467571)		 Ensembl
RGD		 PMID:16467571 GO_REF:0000107 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960 		JBrowse link
G Pxdn peroxidasin involved_in ISO (PMID:22842973) RGD PMID:22842973 NCBI chr 6:46,580,749...46,658,345
Ensembl chr 6:46,580,761...46,658,345 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:4413438|PMID:18802027) RGD PMID:18802027 MGI:4413438 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Selenon selenoprotein N acts_upstream_of_or_within ISO (PMID:28106121) RGD PMID:28106121 NCBI chr 5:146,748,638...146,764,656
Ensembl chr 5:146,748,652...146,763,059 		JBrowse link
G Serpinf2 serpin family F member 2 involved_in ISO (MGI:5306295|PMID:17958745) RGD PMID:17958745 MGI:5306295 NCBI chr10:60,272,400...60,280,506
Ensembl chr10:60,272,400...60,281,243 		JBrowse link
G Serpinh1 serpin family H member 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2176070|MGI:2385994|MGI:5505265 (PMID:10995453), (PMID:22492985)		 GO_Central
RGD		 PMID:10995453 PMID:22492985 GO_REF:0000033 NCBI chr 1:153,643,500...153,650,853
Ensembl chr 1:153,643,510...153,650,801 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:3664776 (PMID:19079247) RGD PMID:19079247 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:16891397)		 AgBase
RGD		 PMID:16891397 GO_REF:0000024 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2388050 (PMID:15993878)		 Ensembl
RGD		 PMID:15993878 GO_REF:0000107 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
G Tnxb tenascin XB acts_upstream_of_or_within ISO MGI:2181283|MGI:3053791 (PMID:11925569), (PMID:15194424) RGD PMID:11925569 PMID:15194424
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3699244|MGI:5816979 (PMID:27435297)		 Ensembl
RGD		 PMID:27435297 GO_REF:0000107 NCBI chr 6:106,888,284...106,913,139
Ensembl chr 6:106,888,284...106,913,117 		JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated acts_upstream_of_or_within ISO MGI:3699244|MGI:5770088 (PMID:27435297) RGD PMID:27435297 NCBI chr 1:134,223,967...134,247,232
Ensembl chr 1:134,223,949...134,246,970 		JBrowse link
G Zfp469 zinc finger protein 469 acts_upstream_of_or_within ISO MGI:6765940 (PMID:34368841) RGD PMID:34368841 NCBI chr19:50,282,337...50,324,010 JBrowse link
negative regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chadl chondroadherin-like involved_in ISO (PMID:25451920) RGD PMID:25451920 NCBI chr 7:113,205,323...113,218,678
Ensembl chr 7:113,210,748...113,217,272 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in ISO (MGI:5605894|PMID:25056700) RGD PMID:25056700 MGI:5605894 NCBI chr 6:25,455,974...25,463,713
Ensembl chr 6:25,445,298...25,463,698 		JBrowse link
positive regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Colgalt1 collagen beta(1-O)galactosyltransferase 1 involved_in ISO (PMID:27402836) RGD PMID:27402836 NCBI chr16:18,319,796...18,332,106
Ensembl chr16:18,319,795...18,332,106 		JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in ISO (MGI:5660411|PMID:26178373), (MGI:5695689|PMID:26220971), (MGI:6158865|PMID:26711913) RGD PMID:26178373 PMID:26220971 PMID:26711913 MGI:5660411 MGI:5695689 MGI:6158865 NCBI chr 1:202,781,692...202,789,784
Ensembl chr 1:202,781,665...202,789,414 		JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in IEA
ISO		 GO_REF:0000107
(MGI:6112863|PMID:29304157)		 Ensembl
RGD		 PMID:29304157 GO_REF:0000107 MGI:6112863 NCBI chr15:48,371,295...48,502,473
Ensembl chr15:48,371,296...48,502,302 		JBrowse link
G Tnxb tenascin XB involved_in ISO (PMID:17033827) RGD PMID:17033827
regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aebp1 AE binding protein 1 involved_in ISO
IEA
ISS		 (PMID:29606302)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:29606302 GO_REF:0000024 GO_REF:0000107 NCBI chr14:80,738,800...80,748,878
Ensembl chr14:80,738,892...80,748,877 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO MGI:2153356 (PMID:20951202) RGD PMID:20951202 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597 		JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in ISO (MGI:5776647|PMID:26690653) RGD PMID:26690653 MGI:5776647 NCBI chr 1:202,781,692...202,789,784
Ensembl chr 1:202,781,665...202,789,414 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    cellular process 18195
      cellular component organization or biogenesis 6958
        cellular component organization 6699
          supramolecular fiber organization 874
            collagen fibril organization 66
              negative regulation of collagen fibril organization 2
              positive regulation of collagen fibril organization 4
              regulation of collagen fibril organization + 8
Path 2
Term Annotations click to browse term
  biological_process 19692
    cellular process 18195
      cellular component organization or biogenesis 6958
        cellular component organization 6699
          extracellular structure organization 338
            extracellular matrix organization 337
              collagen fibril organization 66
                negative regulation of collagen fibril organization 2
                positive regulation of collagen fibril organization 4
                regulation of collagen fibril organization + 8
paths to the root