Tnxb (tenascin XB) - Rat Genome Database
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Gene: Tnxb (tenascin XB) Rattus norvegicus
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Symbol: Tnxb
Name: tenascin XB
RGD ID: 1594402
Description: ENCODES a protein that exhibits collagen binding (ortholog); collagen fibril binding (ortholog); heparin binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); cell-matrix adhesion (ortholog); collagen fibril organization (ortholog); ASSOCIATED WITH congenital adrenal hyperplasia (ortholog); Congenital Adrenal Hyperplasia due to 21 Hydroxylase Deficiency (ortholog); Cyanosis (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog); extracellular space (ortholog); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; ammonium chloride
Type: protein-coding
Also known as: MGC188001; tenascin X pseudogene; Tnx
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Tnxa-ps1  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.4204,133,875 - 4,178,049 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1204,133,161 - 4,134,180 (-)NCBI
Celera203,953,496 - 3,997,652 (+)NCBICelera
Cytogenetic Map20p12NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:7512972   PMID:7528728   PMID:8856503   PMID:11925569   PMID:12410392   PMID:12419962   PMID:12477932   PMID:15102077   PMID:15194424   PMID:15212943   PMID:15242785   PMID:15298681  
PMID:15340236   PMID:16278880   PMID:16551009   PMID:20551380   PMID:23376485   PMID:23533145   PMID:24563484   PMID:27068509   PMID:27559042  


Genomics

Comparative Map Data
Tnxb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.4204,133,875 - 4,178,049 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1204,133,161 - 4,134,180 (-)NCBI
Celera203,953,496 - 3,997,652 (+)NCBICelera
Cytogenetic Map20p12NCBI
TNXB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl632,041,153 - 32,115,334 (-)EnsemblGRCh38hg38GRCh38
GRCh38632,041,153 - 32,109,338 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37632,008,930 - 32,077,115 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,116,911 - 32,185,131 (-)NCBINCBI36hg18NCBI36
Build 34632,116,910 - 32,121,883NCBI
Celera633,575,958 - 33,644,194 (-)NCBI
Cytogenetic Map6p21.33-p21.32NCBI
HuRef631,763,211 - 31,831,274 (-)NCBIHuRef
CHM1_1632,011,143 - 32,079,361 (-)NCBICHM1_1
Tnxb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,879,427 - 34,938,789 (+)NCBIGRCm39mm39
GRCm39 Ensembl1734,879,431 - 34,938,789 (+)Ensembl
GRCm381734,660,453 - 34,719,815 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,660,457 - 34,719,815 (+)EnsemblGRCm38mm10GRCm38
MGSCv371734,807,480 - 34,856,572 (+)NCBIGRCm37mm9NCBIm37
MGSCv361734,278,591 - 34,327,683 (+)NCBImm8
Celera1737,765,706 - 37,815,870 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.24NCBI
Tnxb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437511,963 - 553,856 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955437516,713 - 561,188 (-)NCBIChiLan1.0ChiLan1.0
LOC100992963
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1632,572,833 - 32,637,194 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,571,199 - 32,626,155 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0631,687,994 - 31,756,279 (-)NCBIMhudiblu_PPA_v0panPan3
TNXB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl121,453,260 - 1,509,749 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1121,453,227 - 1,510,171 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tnxb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367271,492,725 - 1,550,762 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNXB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl724,088,873 - 24,155,815 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1724,088,873 - 24,155,815 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,681,443 - 27,723,267 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNXB
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11739,919,839 - 39,988,087 (+)NCBI
ChlSab1.1 Ensembl1739,919,772 - 39,986,868 (+)Ensembl
Tnxb
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475424,198,979 - 24,253,185 (+)NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:95
Interacting mature miRNAs:97
Transcripts:ENSRNOT00000048985
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Protein Sequences
GenBank Protein AAD17201 (Get FASTA)   NCBI Sequence Viewer  
  AAI66501 (Get FASTA)   NCBI Sequence Viewer  
  AAI68189 (Get FASTA)   NCBI Sequence Viewer  

Additional Information

Database Acc Id Source(s)
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Fibrinogen-like_C UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_dom UniProtKB/TrEMBL
  Fibrinogen_CS UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  TNX UniProtKB/TrEMBL
NCBI Gene 415089 ENTREZGENE
PANTHER PTHR46708:SF3 UniProtKB/TrEMBL
Pfam Fibrinogen_C UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
PhenoGen Tnxb PhenoGen
PROSITE FIBRINOGEN_C_1 UniProtKB/TrEMBL
  FIBRINOGEN_C_2 UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
SMART FBG UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
  SSF56496 UniProtKB/TrEMBL
UniProt B2GV27_RAT UniProtKB/TrEMBL
  B4F793_RAT UniProtKB/TrEMBL
  B4F7A0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-03 Tnxb  tenascin XB  Tnxb  tenascin XB  Data Merged 737654 APPROVED
2008-09-03 Tnxb  tenascin XB  Tnx  tenascin X pseudogene  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2006-11-20 Tnx  tenascin X pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-07-08 Tnxb  tenascin XB      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Tnxb  tenascin XB      Symbol and Name status set to provisional 70820 PROVISIONAL