ONTOLOGY REPORT - ANNOTATIONS
Term: extracellular matrix organization
Accession: GO:0030198
browse the term
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
Synonyms: exact_synonym: extracellular matrix organisation
related_synonym: extracellular matrix organization and biogenesis
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AABR07043892.1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr19:46,164,123...46,167,950
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AABR07049085.1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 5:104,362,971...104,753,863
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AABR07060833.1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 4:96,562,725...96,564,611
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AABR07069011.1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr 8:5,199,426...5,202,360
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Abi3bp
ABI family member 3 binding protein
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr11:46,206,932...46,422,791
Ensembl chr11:46,208,075...46,369,577
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Adamts1
ADAM metallopeptidase with thrombospondin type 1 motif, 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr11:25,342,119...25,350,938
Ensembl chr11:25,342,126...25,350,974
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Adamts10
ADAM metallopeptidase with thrombospondin type 1 motif, 10
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 7:18,409,147...18,439,012
Ensembl chr 7:18,409,147...18,439,012
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Adamts12
ADAM metallopeptidase with thrombospondin type 1 motif, 12
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:61,039,072...61,340,687
Ensembl chr 2:61,039,053...61,340,697
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Adamts13
ADAM metallopeptidase with thrombospondin type 1 motif, 13
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:5,519,921...5,558,390
Ensembl chr 3:5,519,990...5,558,166
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Adamts14
ADAM metallopeptidase with thrombospondin type 1 motif, 14
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr20:30,812,319...30,888,936
Ensembl chr20:30,812,353...30,888,751
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Adamts15
ADAM metallopeptidase with thrombospondin type 1 motif, 15
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:31,977,001...32,000,378
Ensembl chr 8:31,977,001...32,000,378
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Adamts16
ADAM metallopeptidase with thrombospondin type 1 motif, 16
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:35,067,268...35,200,530
Ensembl chr 1:35,067,490...35,198,939
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Adamts17
ADAM metallopeptidase with thrombospondin type 1 motif, 17
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:127,802,872...128,126,764
Ensembl chr 1:127,802,978...128,124,171
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Adamts18
ADAM metallopeptidase with thrombospondin type 1 motif, 18
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr19:46,005,055...46,167,912
Ensembl chr19:46,005,277...46,101,250
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Adamts19
ADAM metallopeptidase with thrombospondin type 1 motif, 19
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr18:53,915,807...54,099,856
Ensembl chr18:53,915,807...54,099,120
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Adamts2
ADAM metallopeptidase with thrombospondin type 1 motif, 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr10:36,098,051...36,304,416
Ensembl chr10:36,098,051...36,304,409
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Adamts20
ADAM metallopeptidase with thrombospondin type 1 motif, 20
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:3778519|PMID:18454205)
RGD
PMID:18454205 , PMID:21873635
MGI:3778519 , RGD:13792537
NCBI chr 7:135,465,021...135,630,941
Ensembl chr 7:135,466,884...135,630,654
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Adamts3
ADAM metallopeptidase with thrombospondin type 1, motif 3
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr14:19,866,278...20,072,896
Ensembl chr14:19,866,408...20,070,994
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Adamts4
ADAM metallopeptidase with thrombospondin type 1 motif, 4
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr13:89,622,996...89,632,485
Ensembl chr13:89,622,632...89,634,419
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Adamts5
ADAM metallopeptidase with thrombospondin type 1 motif, 5
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr11:25,411,174...25,456,639
Ensembl chr11:25,410,975...25,456,836
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Adamts6
ADAM metallopeptidase with thrombospondin type 1 motif, 6
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:34,374,142...34,589,676
Ensembl chr 2:34,374,158...34,586,755
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Adamts7
ADAM metallopeptidase with thrombospondin type 1 motif, 7
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:97,535,777...97,575,661
Ensembl chr 8:97,535,777...97,575,655
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Adamts8
ADAM metallopeptidase with thrombospondin type 1 motif, 8
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:32,017,684...32,037,529
Ensembl chr 8:32,018,560...32,037,531
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Adamts9
ADAM metallopeptidase with thrombospondin type 1 motif, 9
involved_in
IBA ISO
PMID:21873635 (MGI:4452308|PMID:20096780)
RGD
PMID:20096780 , PMID:21873635
MGI:4452308 , RGD:13792537
NCBI chr 4:124,660,254...124,860,997
Ensembl chr 4:124,660,262...124,858,250
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Adamtsl2
ADAMTS-like 2
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:5638958|PMID:25762570)
RGD
PMID:25762570 , PMID:21873635
MGI:5638958 , RGD:13792537
NCBI chr 3:5,624,473...5,654,890
Ensembl chr 3:5,624,506...5,654,910
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Adamtsl3
ADAMTS-like 3
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:144,238,958...144,561,065
Ensembl chr 1:144,239,020...144,561,247
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Adamtsl4
ADAMTS-like 4
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:3807344|PMID:18757743)
RGD
PMID:18757743 , PMID:21873635
MGI:3807344 , RGD:13792537
NCBI chr 2:197,803,572...197,815,058
Ensembl chr 2:197,803,584...197,814,808
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Adamtsl5
ADAMTS-like 5
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 7:12,228,706...12,237,382
Ensembl chr 7:12,229,379...12,234,576
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Agt
angiotensinogen
acts_upstream_of_or_within
ISO
MGI:2136636 (MGI:2385816|PMID:9734405)
RGD
PMID:9734405
MGI:2385816
NCBI chr19:57,321,594...57,333,460
Ensembl chr19:57,321,640...57,333,433
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Apbb1
amyloid beta precursor protein binding family B member 1
acts_upstream_of_or_within
ISO
MGI:108405 (MGI:3614238|PMID:16407979)
RGD
PMID:16407979
MGI:3614238
NCBI chr 1:170,387,625...170,411,263
Ensembl chr 1:170,387,609...170,404,056
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Apbb2
amyloid beta precursor protein binding family B member 2
acts_upstream_of_or_within
ISO
MGI:107765 (MGI:3614238|PMID:16407979)
RGD
PMID:16407979
MGI:3614238
NCBI chr14:43,205,047...43,526,968
Ensembl chr14:43,512,901...43,523,080
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Aplp1
amyloid beta precursor like protein 1
acts_upstream_of_or_within
ISO
MGI:88047|MGI:88059 (MGI:3056838|PMID:15385965)
RGD
PMID:15385965
MGI:3056838
NCBI chr 1:88,897,525...88,908,750
Ensembl chr 1:88,897,532...88,908,750
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Aplp2
amyloid beta precursor like protein 2
acts_upstream_of_or_within
ISO
MGI:88046|MGI:88059 (MGI:3056838|PMID:15385965)
RGD
PMID:15385965
MGI:3056838
NCBI chr 8:32,298,526...32,328,821
Ensembl chr 8:32,298,532...32,328,839
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App
amyloid beta precursor protein
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:88046|MGI:88047 (MGI:3056838|PMID:15385965)
UniProt RGD
PMID:15385965
GO_REF:0000024 MGI:3056838
NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
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Atp7a
ATPase copper transporting alpha
acts_upstream_of_or_within
ISO
MGI:1856097 (MGI:53994|PMID:1115218)
RGD
PMID:1115218
MGI:53994
NCBI chr X:77,076,085...77,193,644
Ensembl chr X:77,076,106...77,193,644
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Atxn1l
ataxin 1-like
acts_upstream_of_or_within
ISO
MGI:5301616 (MGI:5298126|PMID:22014525)
RGD
PMID:22014525
MGI:5298126
NCBI chr19:41,932,356...41,939,456
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B4galt1
beta-1,4-galactosyltransferase 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2388614 (MGI:84206|PMID:8787759) MGI:2178779 (MGI:2178150|PMID:11900463)
Ensembl RGD
PMID:8787759 PMID:11900463
GO_REF:0000107 MGI:2178150 MGI:84206
NCBI chr 5:57,121,768...57,168,610
Ensembl chr 5:57,121,769...57,168,610
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Bcl3
BCL3, transcription coactivator
acts_upstream_of_or_within
ISO
MGI:2158443 (MGI:3655550|PMID:10586052)
RGD
PMID:10586052
MGI:3655550
NCBI chr 1:80,730,758...80,745,273
Ensembl chr 1:80,730,499...80,744,831
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Ccdc80
coiled-coil domain containing 80
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr11:60,645,660...60,679,249
Ensembl chr11:60,645,086...60,679,555
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Ccn1
cellular communication network factor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:3807344|PMID:18757743)
Ensembl RGD
PMID:18757743
GO_REF:0000107 MGI:3807344
NCBI chr 2:251,529,354...251,532,312
Ensembl chr 2:251,529,354...251,532,312
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Col10a1
collagen type X alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr20:41,180,295...41,190,664
Ensembl chr20:41,184,287...41,189,633
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Col11a1
collagen type XI alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
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Col11a2
collagen type XI alpha 2 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr20:3,829,324...3,859,022
Ensembl chr20:3,830,164...3,859,018
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Col13a1
collagen type XIII alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr20:31,456,502...31,598,360
Ensembl chr20:31,456,852...31,598,118
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Col15a1
collagen type XV alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:62,840,360...62,950,240
Ensembl chr 5:64,476,317...64,542,645 Ensembl chr 5:64,476,317...64,542,645
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Col16a1
collagen type XVI alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:148,257,030...148,311,645
Ensembl chr 5:148,257,642...148,311,645
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Col17a1
collagen type XVII alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:267,416,681...267,465,049
Ensembl chr 1:267,417,459...267,463,705
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Col18a1
collagen type XVIII alpha 1 chain
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:2179134 (MGI:3054601|PMID:15254016)
RGD
PMID:15254016 , PMID:21873635
MGI:3054601 , RGD:13792537
NCBI chr20:12,225,202...12,332,858
Ensembl chr20:12,225,202...12,332,858
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Col19a1
collagen type XIX alpha 1 chain
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:3053870 (MGI:3053247|PMID:15302855)
RGD
PMID:15302855 , PMID:21873635
MGI:3053247 , RGD:13792537
NCBI chr 9:30,508,003...30,864,836
Ensembl chr 9:30,515,089...30,844,199
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Col1a1
collagen type I alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
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Col1a2
collagen type I alpha 2 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 4:31,534,225...31,569,152
Ensembl chr 4:31,534,225...31,569,151
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Col22a1
collagen type XXII alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 7:113,014,896...113,251,165
Ensembl chr 7:113,015,747...113,228,439
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Col23a1
collagen type XXIII alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr10:34,846,618...34,934,991
Ensembl chr10:34,903,343...34,933,539
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Col24a1
collagen type XXIV alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:251,200,686...251,436,254
Ensembl chr 2:251,200,686...251,434,932
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Col25a1
collagen type XXV alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:235,515,364...235,705,448
Ensembl chr 2:235,596,123...235,715,057
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Col27a1
collagen type XXVII alpha 1 chain
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:5315593 (MGI:5315238|PMID:22206015)
RGD
PMID:22206015 , PMID:21873635
MGI:5315238 , RGD:13792537
NCBI chr 5:79,054,004...79,172,442
Ensembl chr 5:79,055,521...79,170,765
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Col28a1
collagen type XXVIII alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 4:34,048,074...34,198,558
Ensembl chr 4:34,048,533...34,194,764
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Col2a1
collagen type II alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
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Col3a1
collagen type III alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 9:52,023,295...52,059,221
Ensembl chr 9:52,023,295...52,059,217
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Col4a1
collagen type IV alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr16:83,522,162...83,632,153
Ensembl chr16:83,522,162...83,632,153
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Col4a2
collagen type IV alpha 2 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr16:83,386,388...83,522,169
Ensembl chr16:83,387,364...83,438,561
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Col4a3
collagen type IV alpha 3 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 9:88,357,528...88,484,735
Ensembl chr 9:88,357,556...88,485,830
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Col4a4
collagen type IV alpha 4 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 9:88,314,763...88,357,183
Ensembl chr 9:88,232,455...88,357,182
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Col4a5
collagen type IV alpha 5 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr X:112,769,595...112,983,720
Ensembl chr X:112,769,645...112,983,685
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Col4a6
collagen type IV alpha 6 chain
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:2148900|PMID:10965041)
RGD
PMID:10965041 , PMID:21873635
MGI:2148900 , RGD:13792537
NCBI chr X:112,405,647...112,768,337
Ensembl chr X:112,405,647...112,473,822
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Col5a1
collagen type V alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882
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Col5a2
collagen type V alpha 2 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 9:52,091,088...52,238,735
Ensembl chr 9:52,092,511...52,238,564
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Col5a3
collagen type V alpha 3 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:21,786,324...21,831,751
Ensembl chr 8:21,786,324...21,831,668
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Col6a1
collagen type VI alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr20:12,657,913...12,676,370
Ensembl chr20:12,658,065...12,675,561
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Col8a1
collagen type VIII alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr11:44,877,690...45,006,203
Ensembl chr11:44,877,859...45,007,891
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Col8a2
collagen type VIII alpha 2 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:144,308,527...144,335,142
Ensembl chr 5:144,308,611...144,335,172
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Col9a1
collagen type IX alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 9:30,419,001...30,502,307
Ensembl chr 9:30,419,001...30,502,298
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Col9a2
collagen type IX alpha 2 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:139,962,684...139,979,865
Ensembl chr 5:139,963,002...139,979,864
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Col9a3
collagen type IX alpha 3 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:176,102,287...176,124,839
Ensembl chr 3:176,102,351...176,124,306
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Colq
collagen like tail subunit of asymmetric acetylcholinesterase
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr16:7,626,380...7,681,621
Ensembl chr16:7,627,603...7,681,576
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Crispld2
cysteine-rich secretory protein LCCL domain containing 2
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr19:52,647,038...52,705,118
Ensembl chr19:52,647,070...52,705,131
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Csgalnact1
chondroitin sulfate N-acetylgalactosaminyltransferase 1
acts_upstream_of_or_within
ISO
MGI:4947395 (MGI:4946456|PMID:21148564)
RGD
PMID:21148564
MGI:4946456
NCBI chr16:22,704,318...23,075,071
Ensembl chr16:22,979,444...23,074,798
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Dmp1
dentin matrix acidic phosphoprotein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:3807344|PMID:18757743)
Ensembl RGD
PMID:18757743
GO_REF:0000107 MGI:3807344
NCBI chr14:6,889,851...6,923,961
Ensembl chr14:6,889,856...6,900,733
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Dnajb6
DnaJ heat shock protein family (Hsp40) member B6
acts_upstream_of_or_within
ISO
MGI:2151092 (MGI:5294250|PMID:21972064)
RGD
PMID:21972064
MGI:5294250
NCBI chr 4:2,711,329...2,774,969
Ensembl chr 4:2,711,385...2,774,890
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Ecm2
extracellular matrix protein 2
acts_upstream_of_or_within involved_in
ISO IBA
(MGI:3807344|PMID:18757743) PMID:21873635
RGD
PMID:18757743 , PMID:21873635
MGI:3807344 , RGD:13792537
NCBI chr17:15,533,760...15,566,403
Ensembl chr17:15,533,972...15,566,332
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Egfl6
EGF-like-domain, multiple 6
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr X:29,430,789...29,488,737
Ensembl chr X:29,430,831...29,488,739
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Egflam
EGF-like, fibronectin type III and laminin G domains
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:3807344|PMID:18757743)
Ensembl RGD
PMID:18757743
GO_REF:0000107 MGI:3807344
NCBI chr 2:56,503,002...56,681,334
Ensembl chr 2:56,502,807...56,679,955
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Elf3
E74 like ETS transcription factor 3
acts_upstream_of_or_within
ISO
MGI:2662485 (MGI:2179164|PMID:11984530)
RGD
PMID:11984530
MGI:2179164
NCBI chr13:52,083,873...52,088,798
Ensembl chr13:52,083,859...52,088,780
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Eln
elastin
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:3807344|PMID:18757743)
Ensembl RGD
PMID:18757743
GO_REF:0000107 MGI:3807344
NCBI chr12:24,978,478...25,021,864
Ensembl chr12:24,978,483...25,021,863
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Emilin1
elastin microfibril interfacer 1
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr 6:26,821,249...26,829,013
Ensembl chr 6:26,821,255...26,828,972
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Ercc2
ERCC excision repair 2, TFIIH core complex helicase subunit
acts_upstream_of_or_within
ISO
MGI:2183949 (MGI:1267106|PMID:9651581)
RGD
PMID:9651581
MGI:1267106
NCBI chr 1:80,293,574...80,307,334
Ensembl chr 1:80,293,566...80,307,344
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Ero1a
endoplasmic reticulum oxidoreductase 1 alpha
acts_upstream_of_or_within
ISO
MGI:1859815|MGI:1914725 (MGI:5461404|PMID:22981861)
RGD
PMID:22981861
MGI:5461404
NCBI chr15:19,619,947...19,655,381
Ensembl chr15:19,619,973...19,655,381
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Ero1b
endoplasmic reticulum oxidoreductase 1 beta
acts_upstream_of_or_within
ISO
MGI:1354385|MGI:1859815 (MGI:5461404|PMID:22981861)
RGD
PMID:22981861
MGI:5461404
NCBI chr17:90,709,394...90,783,110
Ensembl chr17:90,710,555...90,756,048
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Fbln1
fibulin 1
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:3807344|PMID:18757743)
RGD
PMID:18757743 , PMID:21873635
MGI:3807344 , RGD:13792537
NCBI chr 7:126,096,793...126,176,468
Ensembl chr 7:126,096,793...126,176,468
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Fbln2
fibulin 2
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 4:122,835,237...122,895,127
Ensembl chr 4:122,835,436...122,895,121
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Fbln5
fibulin 5
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr 6:125,644,797...125,723,957
Ensembl chr 6:125,644,804...125,723,944
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Fn1
fibronectin 1
IMP
RGD
PMID:12388756
RGD:1358623
NCBI chr 9:78,900,111...78,969,018
Ensembl chr 9:78,900,103...78,969,078
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Foxf1
forkhead box F1
acts_upstream_of_or_within
ISO
MGI:1347479 (MGI:3617131|PMID:16439479)
RGD
PMID:16439479
MGI:3617131
NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
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Foxf2
forkhead box F2
acts_upstream_of_or_within
ISO
MGI:1347470|MGI:2667134 (MGI:3617131|PMID:16439479)
RGD
PMID:16439479
MGI:3617131
NCBI chr17:34,150,417...34,156,450
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Gfap
glial fibrillary acidic protein
acts_upstream_of_or_within
ISO
MGI:2183221 (MGI:3719550|PMID:11487638)
RGD
PMID:11487638
MGI:3719550
NCBI chr10:90,990,762...90,999,435
Ensembl chr10:90,990,762...90,999,506
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Gfod2
glucose-fructose oxidoreductase domain containing 2
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:3807344|PMID:18757743)
RGD
PMID:18757743 , PMID:21873635
MGI:3807344 , RGD:13792537
NCBI chr19:37,678,488...37,725,623
Ensembl chr19:37,682,734...37,725,623
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Hpse2
heparanase 2 (inactive)
acts_upstream_of_or_within
ISO
MGI:4308701 (MGI:5621237|PMID:25510506)
RGD
PMID:25510506
MGI:5621237
NCBI chr 1:262,020,903...263,138,299
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Hsd17b12
hydroxysteroid (17-beta) dehydrogenase 12
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr 3:82,924,699...83,048,465
Ensembl chr 3:82,924,687...83,048,435
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Hspg2
heparan sulfate proteoglycan 2
acts_upstream_of_or_within
ISO
MGI:1934892 (MGI:1349497|PMID:10579729)
RGD
PMID:10579729
MGI:1349497
NCBI chr 5:155,812,096...155,913,751
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Ibsp
integrin-binding sialoprotein
involved_in acts_upstream_of_or_within
ISS ISO IBA IEA
GO_REF:0000024 (MGI:3807344|PMID:18757743) PMID:21873635 GO_REF:0000107
UniProt RGD Ensembl
PMID:18757743 , PMID:21873635
GO_REF:0000024 GO_REF:0000107 MGI:3807344 , RGD:13792537
NCBI chr14:6,801,200...6,813,987
Ensembl chr14:6,801,204...6,813,945
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Idua
alpha-L-iduronidase
acts_upstream_of_or_within
ISO
MGI:2176236 (MGI:5632446|PMID:25410057)
RGD
PMID:25410057
MGI:5632446
NCBI chr14:2,041,828...2,056,762
Ensembl chr14:2,042,411...2,056,762
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Itga8
integrin subunit alpha 8
acts_upstream_of_or_within
ISO
MGI:2181699 (MGI:1355040|PMID:10742111)
RGD
PMID:10742111
MGI:1355040
NCBI chr17:79,321,893...79,676,927
Ensembl chr17:79,321,900...79,676,499
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Itih1
inter-alpha trypsin inhibitor, heavy chain 1
acts_upstream_of_or_within
ISO
(MGI:3761906|PMID:17675295)
RGD
PMID:17675295
MGI:3761906
NCBI chr16:7,012,376...7,026,542
Ensembl chr16:7,012,354...7,026,540
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Kazald1
Kazal-type serine peptidase inhibitor domain 1
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr 1:264,827,739...264,831,152
Ensembl chr 1:264,827,739...264,831,151
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Lgals3
galectin 3
acts_upstream_of_or_within
ISO
MGI:97011 (MGI:3589495|PMID:15800063)
RGD
PMID:15800063
MGI:3589495
NCBI chr15:24,153,602...24,165,537
Ensembl chr15:24,141,651...24,165,537
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Mia
MIA SH3 domain containing
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:2159701 (MGI:2158918|PMID:11839810)
RGD
PMID:11839810 , PMID:21873635
MGI:2158918 , RGD:13792537
NCBI chr 1:83,991,577...83,993,270
Ensembl chr 1:83,991,578...83,993,270
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Mmp10
matrix metallopeptidase 10
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:5,734,348...5,742,243
Ensembl chr 8:5,734,348...5,742,243
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Mmp11
matrix metallopeptidase 11
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:2387934 (MGI:3822602|PMID:18622425)
RGD
PMID:18622425 , PMID:21873635
MGI:3822602 , RGD:13792537
NCBI chr20:13,670,051...13,678,834
Ensembl chr20:13,670,066...13,678,089
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Mmp12
matrix metallopeptidase 12
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:5,594,717...5,616,494
Ensembl chr 8:5,606,592...5,616,493
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Mmp13
matrix metallopeptidase 13
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:5,522,739...5,533,018
Ensembl chr 8:5,522,739...5,533,018
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Mmp14
matrix metallopeptidase 14
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr15:33,074,441...33,083,666
Ensembl chr15:33,074,441...33,083,655
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Mmp15
matrix metallopeptidase 15
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr19:10,079,881...10,101,380
Ensembl chr19:10,079,765...10,101,451
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Mmp16
matrix metallopeptidase 16
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:31,568,344...31,818,368
Ensembl chr 5:31,568,419...31,810,484
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Mmp17
matrix metallopeptidase 17
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr12:30,353,874...30,356,526 NCBI chr12:30,701,900...30,728,683
Ensembl chr12:30,702,571...30,728,655
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Mmp19
matrix metallopeptidase 19
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 7:3,216,392...3,224,202
Ensembl chr 7:3,216,497...3,224,201
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Mmp1b
matrix metallopeptidase 1b (interstitial collagenase)
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:5,622,657...5,688,762
Ensembl chr 8:5,623,198...5,631,014
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Mmp2
matrix metallopeptidase 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr19:15,542,771...15,570,589
Ensembl chr19:15,542,765...15,570,611
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Mmp20
matrix metallopeptidase 20
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:5,823,147...5,875,555
Ensembl chr 8:5,833,359...5,875,232
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Mmp21
matrix metallopeptidase 21
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:205,745,119...205,750,786
Ensembl chr 1:205,745,119...205,750,786
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Mmp23
matrix metallopeptidase 23
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:173,078,811...173,082,834
Ensembl chr 5:173,078,590...173,081,839
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Mmp24
matrix metallopeptidase 24
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:151,307,309...151,355,401
Ensembl chr 3:151,310,598...151,355,401
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Mmp27
matrix metallopeptidase 27
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:5,790,019...5,799,938
Ensembl chr 8:5,790,034...5,800,342
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Mmp28
matrix metallopeptidase 28
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr10:70,660,691...70,681,672
Ensembl chr10:70,660,691...70,681,672
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Mmp3
matrix metallopeptidase 3
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:5,676,608...5,698,579
Ensembl chr 8:5,676,665...5,698,579
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Mmp7
matrix metallopeptidase 7
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:5,893,253...5,900,965
Ensembl chr 8:5,893,249...5,901,049
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Mmp8
matrix metallopeptidase 8
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:5,768,808...5,777,741
Ensembl chr 8:5,768,811...5,778,702
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Mmp9
matrix metallopeptidase 9
involved_in acts_upstream_of_or_within
IEA ISO IBA
GO_REF:0000107 MGI:1932294|MGI:96778 (MGI:3589495|PMID:15800063) PMID:21873635
Ensembl RGD
PMID:15800063 , PMID:21873635
GO_REF:0000107 MGI:3589495 , RGD:13792537
NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520
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Mpzl3
myelin protein zero-like 3
acts_upstream_of_or_within
ISO
MGI:1857012 (MGI:3055636|PMID:15482472)
RGD
PMID:15482472
MGI:3055636
NCBI chr 8:49,354,257...49,374,444
Ensembl chr 8:49,354,115...49,376,687
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Myf5
myogenic factor 5
acts_upstream_of_or_within
ISO
MGI:1857973 (MGI:3624056|PMID:16554364)
RGD
PMID:16554364
MGI:3624056
NCBI chr 7:49,729,533...49,732,974
Ensembl chr 7:49,729,533...49,732,764
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Ndnf
neuron-derived neurotrophic factor
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr 4:96,528,830...96,565,780
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Nepn
nephrocan
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr20:33,527,932...33,543,860
Ensembl chr20:33,527,932...33,543,848
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Nf1
neurofibromin 1
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:1857478 (MGI:3655425|PMID:16835260)
HGNC-UCL RGD
PMID:16835260
GO_REF:0000024 MGI:3655425
NCBI chr10:66,732,460...66,928,706
Ensembl chr10:66,690,133...66,928,903
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Nfkb2
nuclear factor kappa B subunit 2
acts_upstream_of_or_within
ISO
MGI:2179705 (MGI:3655550|PMID:10586052)
RGD
PMID:10586052
MGI:3655550
NCBI chr 1:266,050,634...266,059,277
Ensembl chr 1:266,053,002...266,059,256
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Nid1
nidogen 1
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr17:90,553,161...90,627,133
Ensembl chr17:90,553,394...90,627,101
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Nox1
NADPH oxidase 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3616995 (MGI:3615064|PMID:16386251)
Ensembl RGD
PMID:16386251
GO_REF:0000107 MGI:3615064
NCBI chr X:104,909,328...104,932,508
Ensembl chr X:104,909,326...104,932,508
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Nphp3
nephrocystin 3
acts_upstream_of_or_within
ISO
MGI:1856987 (MGI:71873|PMID:7539536)
RGD
PMID:7539536
MGI:71873
NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
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Npnt
nephronectin
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr 2:238,001,767...238,068,886
Ensembl chr 2:238,002,990...238,068,694
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Nr2e1
nuclear receptor subfamily 2, group E, member 1
acts_upstream_of_or_within
ISO
MGI:2176560 (MGI:3615102|PMID:16424942)
RGD
PMID:16424942
MGI:3615102
NCBI chr20:47,286,843...47,306,318
Ensembl chr20:47,288,137...47,306,318
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Olfml2a
olfactomedin-like 2A
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr 3:23,223,468...23,259,318
Ensembl chr 3:23,223,479...23,259,321
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Olfml2b
olfactomedin-like 2B
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr13:88,995,301...89,032,487
Ensembl chr13:88,995,316...89,032,487
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Otol1
otolin 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:166,845,543...166,866,513
Ensembl chr 2:166,856,784...166,866,195
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Papln
papilin, proteoglycan-like sulfated glycoprotein
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 6:107,245,573...107,282,256
Ensembl chr 6:107,245,820...107,276,755
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Pdgfra
platelet derived growth factor receptor alpha
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1926728 (MGI:3525374|PMID:15543606)
Ensembl RGD
PMID:15543606
GO_REF:0000107 MGI:3525374
NCBI chr14:35,527,926...35,581,130
Ensembl chr14:35,527,927...35,581,031
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Pomt1
protein-O-mannosyltransferase 1
acts_upstream_of_or_within
ISO
MGI:3497739 (MGI:3057057|PMID:15383666)
RGD
PMID:15383666
MGI:3057057
NCBI chr 3:11,253,424...11,271,873
Ensembl chr 3:11,254,026...11,271,872
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Postn
periostin
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:3610687|PMID:16314533)
RGD
PMID:16314533 , PMID:21873635
MGI:3610687 , RGD:13792537
NCBI chr 2:143,656,820...143,688,087
Ensembl chr 2:143,656,793...143,688,087
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Prdx4
peroxiredoxin 4
acts_upstream_of_or_within
ISO
MGI:1354385|MGI:1914725 (MGI:5461404|PMID:22981861)
RGD
PMID:22981861
MGI:5461404
NCBI chr X:43,495,453...43,512,994
Ensembl chr X:43,497,763...43,512,991
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Ptk2
protein tyrosine kinase 2
acts_upstream_of_or_within
ISO
MGI:2684666 (MGI:2679914|PMID:14642275)
RGD
PMID:14642275
MGI:2679914
NCBI chr 7:114,436,419...114,611,317
Ensembl chr 7:114,437,361...114,590,119
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Ptx3
pentraxin 3
acts_upstream_of_or_within
ISO
(MGI:3761906|PMID:17675295)
RGD
PMID:17675295
MGI:3761906
NCBI chr 2:158,097,843...158,103,653
Ensembl chr 2:158,097,843...158,103,653
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Pxdn
peroxidasin
involved_in
ISO
(PMID:19590037) (MGI:3851833|PMID:19590037)
RGD
PMID:19590037
MGI:3851833
NCBI chr 6:48,866,496...48,982,368
Ensembl chr 6:48,866,601...48,980,340
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Reck
reversion-inducing-cysteine-rich protein with kazal motifs
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:3623517 (MGI:3621661|PMID:11747814)
RGD
PMID:11747814 , PMID:21873635
MGI:3621661 , RGD:13792537
NCBI chr 5:59,348,568...59,415,169
Ensembl chr 5:59,348,639...59,415,135
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RGD1562885
similar to RIKEN cDNA 2300002M23
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr20:3,689,608...3,691,164
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Rxfp1
relaxin family peptide receptor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3054831 (MGI:3054144|PMID:15256493)
Ensembl RGD
PMID:15256493
GO_REF:0000107 MGI:3054144
NCBI chr 2:178,402,411...178,520,213
Ensembl chr 2:178,399,274...178,521,038
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Scara3
scavenger receptor class A, member 3
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr15:42,605,505...42,638,409
Ensembl chr15:42,605,473...42,638,392
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Serac1
serine active site containing 1
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr 1:46,934,499...46,978,264
Ensembl chr 1:46,942,192...46,978,261
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Serpinb5
serpin family B member 5
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3040188 (MGI:3806752|PMID:18593913)
Ensembl RGD
PMID:18593913
GO_REF:0000107 MGI:3806752
NCBI chr13:26,903,052...26,923,250
Ensembl chr13:26,903,052...26,923,250
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Slc39a8
solute carrier family 39 member 8
acts_upstream_of
ISO ISS
(PMID:29337306) (MGI:6117959|PMID:29337306) GO_REF:0000024
RGD UniProt
PMID:29337306
GO_REF:0000024 MGI:6117959
NCBI chr 2:241,028,851...241,092,584
Ensembl chr 2:241,029,693...241,092,582
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Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
acts_upstream_of_or_within
ISO
MGI:2450311|MGI:3605892 (MGI:3776329|PMID:18267097)
RGD
PMID:18267097
MGI:3776329
NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
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Smoc1
SPARC related modular calcium binding 1
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:3807344|PMID:18757743)
RGD
PMID:18757743 , PMID:21873635
MGI:3807344 , RGD:13792537
NCBI chr 6:104,718,403...104,879,611
Ensembl chr 6:104,718,512...104,877,980
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Smoc2
SPARC related modular calcium binding 2
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:3807344|PMID:18757743)
RGD
PMID:18757743 , PMID:21873635
MGI:3807344 , RGD:13792537
NCBI chr 1:56,242,289...56,374,106
Ensembl chr 1:56,242,346...56,374,120
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Sox9
SRY-box transcription factor 9
acts_upstream_of_or_within
ISO
MGI:2385468|MGI:2450311 (MGI:3709829|PMID:17350610), (MGI:5523731|PMID:24191021)
RGD
PMID:17350610 PMID:24191021
MGI:3709829 MGI:5523731
NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
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Spint1
serine peptidase inhibitor, Kunitz type 1
acts_upstream_of_or_within
ISO
MGI:3709554 (MGI:3700412|PMID:17174946)
RGD
PMID:17174946
MGI:3700412
NCBI chr 3:111,049,132...111,061,991
Ensembl chr 3:111,049,118...111,062,011
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Spock2
SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr20:29,654,926...29,679,927
Ensembl chr20:29,655,226...29,677,926
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Tgfb2
transforming growth factor, beta 2
acts_upstream_of_or_within
ISO
MGI:1888389 (MGI:2156271|PMID:11784073), (MGI:3522686|PMID:15528466)
RGD
PMID:11784073 PMID:15528466
MGI:2156271 MGI:3522686
NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
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Tgfbi
transforming growth factor, beta induced
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:3807344|PMID:18757743)
RGD
PMID:18757743 , PMID:21873635
MGI:3807344 , RGD:13792537
NCBI chr17:8,400,123...8,429,338
Ensembl chr17:8,400,146...8,429,338
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Tnf
tumor necrosis factor
acts_upstream_of_or_within
ISO
(MGI:3510270|PMID:15381731)
RGD
PMID:15381731
MGI:3510270
NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000 Ensembl chr20:5,189,390...5,192,000
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Tnfrsf11b
TNF receptor superfamily member 11B
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr 7:93,798,580...93,826,586
Ensembl chr 7:93,798,545...93,826,665
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Tnr
tenascin R
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2154583 (MGI:1337730|PMID:10341229), (MGI:1927381|PMID:11077416), (MGI:3652670|PMID:16870730)
Ensembl RGD
PMID:10341229 PMID:11077416 PMID:16870730
GO_REF:0000107 MGI:1337730 MGI:1927381 MGI:3652670
NCBI chr13:77,602,249...77,678,385
Ensembl chr13:77,485,113...77,678,437
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Tnxb
tenascin XB
acts_upstream_of_or_within
ISO
MGI:3053791 (MGI:3052884|PMID:15242785)
RGD
PMID:15242785
MGI:3052884
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Vhl
von Hippel-Lindau tumor suppressor
acts_upstream_of_or_within
ISO
MGI:2136645|MGI:2450311 (MGI:3619780|PMID:16537898)
RGD
PMID:16537898
MGI:3619780
NCBI chr 4:145,580,869...145,587,835
Ensembl chr 4:145,580,799...145,587,845
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Vit
vitrin
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:3807344|PMID:18757743)
RGD
PMID:18757743 , PMID:21873635
MGI:3807344 , RGD:13792537
NCBI chr 6:1,091,817...1,208,888
Ensembl chr 6:1,147,012...1,208,392
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Vtn
vitronectin
acts_upstream_of_or_within
ISO
(MGI:3807344|PMID:18757743)
RGD
PMID:18757743
MGI:3807344
NCBI chr10:65,767,960...65,771,040
Ensembl chr10:65,767,053...65,771,038
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Vwa1
von Willebrand factor A domain containing 1
acts_upstream_of_or_within
ISO
MGI:3809230 (MGI:3807344|PMID:18757743), (MGI:3849094|PMID:19279005)
RGD
PMID:18757743 PMID:19279005
MGI:3807344 MGI:3849094
NCBI chr 5:173,216,737...173,221,923
Ensembl chr 5:173,216,741...173,222,440
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Wnt3a
Wnt family member 3A
acts_upstream_of_or_within
ISO
(MGI:3793974|PMID:17943183)
RGD
PMID:17943183
MGI:3793974
NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
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Lamb1
laminin subunit beta 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 6:50,528,796...50,596,593
Ensembl chr 6:50,528,823...50,596,079
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Lamb2
laminin subunit beta 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:117,268,335...117,280,517
Ensembl chr 8:117,268,337...117,280,517
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Lamb3
laminin subunit beta 3
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr13:112,031,614...112,073,187
Ensembl chr13:112,031,594...112,073,186
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Ntn4
netrin 4
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 7:34,533,543...34,649,330
Ensembl chr 7:34,533,543...34,649,481
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Ntng1
netrin G1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:212,695,464...213,073,046
Ensembl chr 2:212,696,624...212,852,870
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Ntng2
netrin G2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:7,742,511...7,800,834
Ensembl chr 3:7,742,531...7,796,385
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Plod3
procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
acts_upstream_of_or_within
ISO
MGI:3620600|MGI:3620601|MGI:3620603 (MGI:3618677|PMID:16467571)
RGD
PMID:16467571
MGI:3618677
NCBI chr12:22,716,421...22,726,982
Ensembl chr12:22,716,423...22,726,982
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Ramp2
receptor activity modifying protein 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:3772552|PMID:18097473)
UniProt RGD
PMID:18097473
GO_REF:0000024 MGI:3772552
NCBI chr10:89,166,170...89,168,962
Ensembl chr10:89,166,890...89,168,965
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Cma1
chymase 1
involved_in
ISO
(PMID:27068509)
RGD
PMID:27068509
NCBI chr15:34,601,037...34,603,819
Ensembl chr15:34,601,037...34,603,819
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Ctss
cathepsin S
involved_in
ISO IEA
(PMID:22952693) (MGI:5553237|PMID:22952693) GO_REF:0000107
RGD Ensembl
PMID:22952693
GO_REF:0000107 MGI:5553237
NCBI chr 2:197,655,780...197,679,768
Ensembl chr 2:197,655,786...197,679,458
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Hpn
hepsin
involved_in
IEA ISS ISO
GO_REF:0000107 GO_REF:0000024 (PMID:16908524)
Ensembl UniProt RGD
PMID:16908524
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:89,534,112...89,549,575
Ensembl chr 1:89,534,106...89,543,967
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Cav1
caveolin 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2180364 (MGI:2176684|PMID:11884617)
Ensembl RGD
PMID:11884617
GO_REF:0000107 MGI:2176684
NCBI chr 4:44,597,123...44,630,206
Ensembl chr 4:44,597,123...44,630,200
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Cav2
caveolin 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2180372 (MGI:2176684|PMID:11884617)
Ensembl RGD
PMID:11884617
GO_REF:0000107 MGI:2176684
NCBI chr 4:44,573,264...44,580,640
Ensembl chr 4:44,573,264...44,580,638
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Col4a1
collagen type IV alpha 1 chain
involved_in
ISO
(PMID:18160688), (PMID:19949034), (PMID:23065703)
RGD
PMID:18160688 PMID:19949034 PMID:23065703
NCBI chr16:83,522,162...83,632,153
Ensembl chr16:83,522,162...83,632,153
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Dag1
dystroglycan 1
acts_upstream_of_or_within
ISO
MGI:1934902 (MGI:5470500|PMID:23217742)
RGD
PMID:23217742
MGI:5470500
NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
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Ext1
exostosin glycosyltransferase 1
acts_upstream_of_or_within
ISO
(MGI:5766597|PMID:26024086)
RGD
PMID:26024086
MGI:5766597
NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
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Fermt1
FERM domain containing kindlin 1
involved_in
ISO
(MGI:5571208|PMID:24681597)
RGD
PMID:24681597
MGI:5571208
NCBI chr 3:125,566,744...125,607,864
Ensembl chr 3:125,566,643...125,607,735
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Flrt2
fibronectin leucine rich transmembrane protein 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:4950310|PMID:21350012)
UniProt RGD
PMID:21350012
GO_REF:0000024 MGI:4950310
NCBI chr 6:119,518,459...119,613,534
Ensembl chr 6:119,519,714...119,609,296
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Fshr
follicle stimulating hormone receptor
acts_upstream_of_or_within
ISO
MGI:2384087 (MGI:1313058|PMID:9811848)
RGD
PMID:9811848
MGI:1313058
NCBI chr 6:12,796,383...12,997,817
Ensembl chr 6:12,796,383...12,997,817
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Gas2
growth arrest-specific 2
acts_upstream_of_or_within
ISO
MGI:6187669 (MGI:6102554|PMID:27734842)
RGD
PMID:27734842
MGI:6102554
NCBI chr 1:107,234,389...107,363,624
Ensembl chr 1:107,262,659...107,363,788
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Itgb1
integrin subunit beta 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:5571208|PMID:24681597)
Ensembl RGD
PMID:24681597
GO_REF:0000107 MGI:5571208
NCBI chr19:61,677,512...61,725,537
Ensembl chr19:61,677,542...61,725,535
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Mmp11
matrix metallopeptidase 11
acts_upstream_of_or_within
ISO
MGI:2387934 (MGI:3822602|PMID:18622425)
RGD
PMID:18622425
MGI:3822602
NCBI chr20:13,670,051...13,678,834
Ensembl chr20:13,670,066...13,678,089
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Pmp22
peripheral myelin protein 22
acts_upstream_of_or_within
ISO
MGI:3614822 (MGI:3613258|PMID:16436605)
RGD
PMID:16436605
MGI:3613258
NCBI chr10:49,538,588...49,568,583
Ensembl chr10:49,538,588...49,568,583
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Ric8a
RIC8 guanine nucleotide exchange factor A
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3608888 (MGI:4849883|PMID:21069829)
Ensembl RGD
PMID:21069829
GO_REF:0000107 MGI:4849883
NCBI chr 1:213,606,599...213,612,905
Ensembl chr 1:213,606,599...213,612,904
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Spint2
serine peptidase inhibitor, Kunitz type, 2
acts_upstream_of_or_within
ISO
MGI:2156187 (MGI:4360135|PMID:19592578)
RGD
PMID:19592578
MGI:4360135
NCBI chr 1:87,199,373...87,221,826
Ensembl chr 1:87,199,313...87,221,892
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Tfap2a
transcription factor AP-2 alpha
acts_upstream_of_or_within
ISO
MGI:2183192 (MGI:3610667|PMID:16186342)
RGD
PMID:16186342
MGI:3610667
NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
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Acan
aggrecan
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1856465 (MGI:2664273|PMID:3070812)
Ensembl RGD
PMID:3070812
GO_REF:0000107 MGI:2664273
NCBI chr 1:140,762,758...140,824,441
Ensembl chr 1:140,762,758...140,824,441
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Adamts14
ADAM metallopeptidase with thrombospondin type 1 motif, 14
acts_upstream_of_or_within
ISO
(MGI:2158963|PMID:11741898)
RGD
PMID:11741898
MGI:2158963
NCBI chr20:30,812,319...30,888,936
Ensembl chr20:30,812,353...30,888,751
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Adamts2
ADAM metallopeptidase with thrombospondin type 1 motif, 2
acts_upstream_of_or_within
ISO
MGI:2388161 (MGI:3621082|PMID:16556917)
RGD
PMID:16556917
MGI:3621082
NCBI chr10:36,098,051...36,304,416
Ensembl chr10:36,098,051...36,304,409
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Anxa2
annexin A2
acts_upstream_of_or_within
ISO
MGI:3028929 (MGI:3027337|PMID:14702107)
RGD
PMID:14702107
MGI:3027337
NCBI chr 8:75,687,134...75,723,589
Ensembl chr 8:75,687,100...75,723,594
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Atp7a
ATPase copper transporting alpha
acts_upstream_of_or_within
ISO
MGI:1856097|MGI:1856101|MGI:1856102|MGI:3588774 (MGI:3616522|PMID:16338116), (MGI:53875|PMID:4808708), (MGI:54357|PMID:20889), (MGI:83737|PMID:8096378), (MGI:83811|PMID:8895222)
RGD
PMID:20889 PMID:4808708 PMID:8096378 PMID:8895222 PMID:16338116
MGI:3616522 MGI:53875 MGI:54357 MGI:83737 MGI:83811
NCBI chr X:77,076,085...77,193,644
Ensembl chr X:77,076,106...77,193,644
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Col11a1
collagen type XI alpha 1 chain
acts_upstream_of_or_within
TAS ISO
MGI:1856399|MGI:88457 (MGI:2664273|PMID:3070812), (MGI:3694610|PMID:17029294), (MGI:3766851|PMID:17683922), (MGI:5014156|PMID:21467034), (MGI:53676|PMID:4100752), (MGI:53732|PMID:4110409), (MGI:70833|PMID:7859283)
RGD
PMID:3070812 PMID:4100752 PMID:4110409 PMID:7859283 PMID:17029294 PMID:17683922 PMID:21467034 , PMID:12962540
MGI:2664273 MGI:3694610 MGI:3766851 MGI:5014156 MGI:53676 MGI:53732 MGI:70833 , RGD:1300046
NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
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Col11a2
collagen type XI alpha 2 chain
involved_in acts_upstream_of_or_within
ISO IBA
(PMID:9188673) MGI:2154689 (MGI:1350441|PMID:10581026), (MGI:2151300|PMID:11668593) PMID:21873635
RGD
PMID:9188673 PMID:10581026 PMID:11668593 , PMID:21873635
MGI:1350441 MGI:2151300 , RGD:13792537
NCBI chr20:3,829,324...3,859,022
Ensembl chr20:3,830,164...3,859,018
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Col13a1
collagen type XIII alpha 1 chain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr20:31,456,502...31,598,360
Ensembl chr20:31,456,852...31,598,118
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Col14a1
collagen type XIV alpha 1 chain
acts_upstream_of_or_within
ISO
MGI:3846440 (MGI:5444801|PMID:22906538)
RGD
PMID:22906538
MGI:5444801
NCBI chr 7:95,054,877...95,274,073
Ensembl chr 7:95,074,236...95,273,298
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Col1a1
collagen type I alpha 1 chain
involved_in
ISO
(PMID:14976317), (PMID:15095409), (PMID:17211858), (PMID:18375391)
RGD
PMID:14976317 PMID:15095409 PMID:17211858 PMID:18375391
NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
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Col1a2
collagen type I alpha 2 chain
involved_in
ISO
(PMID:17211858), (PMID:18375391)
RGD
PMID:17211858 PMID:18375391
NCBI chr 4:31,534,225...31,569,152
Ensembl chr 4:31,534,225...31,569,151
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Col2a1
collagen type II alpha 1 chain
involved_in acts_upstream_of_or_within
ISO IBA IEA
(PMID:1429602) MGI:1857275|MGI:2152978 (MGI:1315157|PMID:9832566), (MGI:1327515|PMID:9915573), (MGI:2664273|PMID:3070812), (MGI:3618042|PMID:11171689), (MGI:55057|PMID:7276808), (MGI:77563|PMID:7590256), (MGI:84914|PMID:8989518), (MGI:85592|PMID:9022054) PMID:21873635 GO_REF:0000107
RGD Ensembl
PMID:1429602 PMID:3070812 PMID:7276808 PMID:7590256 PMID:8989518 PMID:9022054 PMID:9832566 PMID:9915573 PMID:11171689 , PMID:21873635
GO_REF:0000107 MGI:1315157 MGI:1327515 MGI:2664273 MGI:3618042 MGI:55057 MGI:77563 MGI:84914 MGI:85592 , RGD:13792537
NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
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Col3a1
collagen type III alpha 1 chain
involved_in acts_upstream_of_or_within
ISO
(PMID:7546986), (PMID:9036918) MGI:1857431 (MGI:86656|PMID:9050868)
RGD
PMID:7546986 PMID:9036918 PMID:9050868
MGI:86656
NCBI chr 9:52,023,295...52,059,221
Ensembl chr 9:52,023,295...52,059,217
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Col5a1
collagen type V alpha 1 chain
involved_in acts_upstream_of_or_within
IEA ISO IBA
GO_REF:0000107 MGI:3664598|MGI:88446 (MGI:3663234|PMID:16492673), (MGI:3664596|PMID:15383546), (MGI:3694610|PMID:17029294), (MGI:5014156|PMID:21467034) PMID:21873635 (PMID:11278977), (PMID:15095409), (PMID:9683580)
Ensembl RGD
PMID:9683580 PMID:11278977 PMID:15095409 PMID:15383546 PMID:16492673 PMID:17029294 PMID:21467034 , PMID:21873635
GO_REF:0000107 MGI:3663234 MGI:3664596 MGI:3694610 MGI:5014156 , RGD:13792537
NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882
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Col5a2
collagen type V alpha 2 chain
involved_in
ISO
(PMID:9425231) (MGI:3047505|PMID:15199158)
RGD
PMID:9425231 PMID:15199158
MGI:3047505
NCBI chr 9:52,091,088...52,238,735
Ensembl chr 9:52,092,511...52,238,564
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Comp
cartilage oligomeric matrix protein
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2180787|MGI:5550566 (MGI:4412116|PMID:19808781), (MGI:5568656|PMID:24312420), (MGI:5922181|PMID:26746240)
Ensembl RGD
PMID:19808781 PMID:24312420 PMID:26746240
GO_REF:0000107 MGI:4412116 MGI:5568656 MGI:5922181
NCBI chr16:20,798,437...20,807,070
Ensembl chr16:20,798,437...20,807,070
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Crtapl1
cartilage associated protein-like 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:122,394,451...122,402,198
Ensembl chr 8:122,417,532...122,421,384
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Cyp1b1
cytochrome P450, family 1, subfamily b, polypeptide 1
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:5544856|PMID:23979599) GO_REF:0000024
Ensembl RGD UniProt
PMID:23979599
GO_REF:0000024 GO_REF:0000107 MGI:5544856
NCBI chr 6:2,308,179...2,316,739
Ensembl chr 6:2,307,808...2,316,722
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Ddr2
discoidin domain receptor tyrosine kinase 2
involved_in
ISO
(MGI:5318020|PMID:19900459)
RGD
PMID:19900459
MGI:5318020
NCBI chr13:88,311,639...88,436,561
Ensembl chr13:88,317,145...88,436,789
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Dpt
dermatopontin
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:2387341 (MGI:2386368|PMID:12230512), (MGI:3655897|PMID:16877395)
RGD
PMID:12230512 PMID:16877395 , PMID:21873635
MGI:2386368 MGI:3655897 , RGD:13792537
NCBI chr13:83,073,307...83,102,404
Ensembl chr13:83,073,544...83,102,401
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Ext1
exostosin glycosyltransferase 1
acts_upstream_of_or_within
ISO
(MGI:6406768|PMID:19850926)
RGD
PMID:19850926
MGI:6406768
NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
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Fkbp10
FKBP prolyl isomerase 10
acts_upstream_of_or_within
ISO
MGI:5432211 (MGI:5585367|PMID:24777781), (MGI:6114458|PMID:28206698)
RGD
PMID:24777781 PMID:28206698
MGI:5585367 MGI:6114458
NCBI chr10:88,326,337...88,338,199
Ensembl chr10:88,326,080...88,338,207
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Fmod
fibromodulin
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr13:50,874,886...50,885,503
Ensembl chr13:50,873,605...50,885,563
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Foxc1
forkhead box C1
acts_upstream_of_or_within
ISO
MGI:1856705 (MGI:1355577|PMID:10767326)
RGD
PMID:10767326
MGI:1355577
NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
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Foxc2
forkhead box C2
acts_upstream_of_or_within
ISO
MGI:1857865 (MGI:1355577|PMID:10767326)
RGD
PMID:10767326
MGI:1355577
NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
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Grem1
gremlin 1, DAN family BMP antagonist
involved_in
ISO
(PMID:15539560)
RGD
PMID:15539560
NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989
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Lmx1b
LIM homeobox transcription factor 1 beta
acts_upstream_of_or_within
ISO
MGI:2158463 (MGI:1353150|PMID:10660670)
RGD
PMID:10660670
MGI:1353150
NCBI chr 3:12,608,748...12,686,937
Ensembl chr 3:12,609,574...12,686,869
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Lox
lysyl oxidase
acts_upstream_of_or_within involved_in
IDA ISO IBA IMP
MGI:3610732 (MGI:3604822|PMID:16192629), (MGI:5766417|PMID:26700732) PMID:21873635
RGD
PMID:16192629 PMID:26700732 , PMID:16804742 , PMID:21873635 , PMID:16432278
MGI:3604822 MGI:5766417 , RGD:1600668 , RGD:13792537 , RGD:1600669
NCBI chr18:47,500,320...47,577,819
Ensembl chr18:47,500,330...47,577,819
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Loxl1
lysyl oxidase-like 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:63,067,757...63,092,124
Ensembl chr 8:63,067,300...63,092,009
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Loxl2
lysyl oxidase-like 2
involved_in
ISS IEA ISO IBA
GO_REF:0000024 GO_REF:0000107 (PMID:21835952) PMID:21873635
UniProt Ensembl RGD
PMID:21835952 , PMID:21873635
GO_REF:0000024 GO_REF:0000107, RGD:13792537
NCBI chr15:51,276,022...51,365,238
Ensembl chr15:51,303,909...51,365,234
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Loxl3
lysyl oxidase-like 3
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 4:113,866,782...113,883,713
Ensembl chr 4:113,866,804...113,883,477
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Loxl4
lysyl oxidase-like 4
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:261,833,365...261,853,599
Ensembl chr 1:261,835,992...261,853,495
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Lum
lumican
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 7:38,820,058...38,826,862
Ensembl chr 7:38,819,771...38,826,862
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Mia3
MIA SH3 domain ER export factor 3
acts_upstream_of_or_within
ISO
MGI:5007248 (MGI:5008683|PMID:21606205)
RGD
PMID:21606205
MGI:5008683
NCBI chr13:101,727,434...101,770,127
Ensembl chr13:101,727,935...101,761,541
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Mkx
mohawk homeobox
acts_upstream_of_or_within
ISO
MGI:5287572 (MGI:5287220|PMID:20696843)
RGD
PMID:20696843
MGI:5287220
NCBI chr17:60,537,615...60,553,284
Ensembl chr17:60,537,935...60,549,750
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Mmp11
matrix metallopeptidase 11
acts_upstream_of_or_within
ISO
MGI:2387934 (MGI:3822602|PMID:18622425)
RGD
PMID:18622425
MGI:3822602
NCBI chr20:13,670,051...13,678,834
Ensembl chr20:13,670,066...13,678,089
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Nf1
neurofibromin 1
involved_in acts_upstream_of_or_within
ISS ISO IEA
GO_REF:0000024 MGI:1857444 (MGI:1339276|PMID:10383727) GO_REF:0000107
HGNC-UCL RGD Ensembl
PMID:10383727
GO_REF:0000024 GO_REF:0000107 MGI:1339276
NCBI chr10:66,732,460...66,928,706
Ensembl chr10:66,690,133...66,928,903
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Optc
opticin
involved_in
ISO
(MGI:6148629|PMID:29323130)
RGD
PMID:29323130
MGI:6148629
NCBI chr13:50,735,509...50,748,908
Ensembl chr13:50,735,599...50,746,354
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P3h1
prolyl 3-hydroxylase 1
acts_upstream_of_or_within
ISO
MGI:4830452 (MGI:4830073|PMID:20363744)
RGD
PMID:20363744
MGI:4830073
NCBI chr 5:138,279,597...138,294,280
Ensembl chr 5:138,279,506...138,294,262
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P3h4
prolyl 3-hydroxylase family member 4
involved_in
IBA ISO ISS
PMID:21873635 (MGI:5779580|PMID:27119146) GO_REF:0000024
RGD UniProt
PMID:27119146 , PMID:21873635
GO_REF:0000024 MGI:5779580 , RGD:13792537
NCBI chr10:88,318,231...88,325,326
Ensembl chr10:88,318,817...88,325,326
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P4ha1
prolyl 4-hydroxylase subunit alpha 1
acts_upstream_of_or_within
ISO
MGI:3706369 (MGI:3706231|PMID:17135260)
RGD
PMID:17135260
MGI:3706231
NCBI chr20:28,920,616...28,972,576
Ensembl chr20:28,920,616...28,971,966
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Plod3
procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
acts_upstream_of_or_within
ISO
MGI:3620600|MGI:3620603 (MGI:3618677|PMID:16467571)
RGD
PMID:16467571
MGI:3618677
NCBI chr12:22,716,421...22,726,982
Ensembl chr12:22,716,423...22,726,982
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Pxdn
peroxidasin
involved_in
ISO
(PMID:22842973)
RGD
PMID:22842973
NCBI chr 6:48,866,496...48,982,368
Ensembl chr 6:48,866,601...48,980,340
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Scx
scleraxis bHLH transcription factor
involved_in
ISO
(MGI:4413438|PMID:18802027)
RGD
PMID:18802027
MGI:4413438
NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
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Serpinf2
serpin family F member 2
involved_in
ISO
(MGI:5306295|PMID:17958745)
RGD
PMID:17958745
MGI:5306295
NCBI chr10:62,264,247...62,272,353
Ensembl chr10:62,264,788...62,273,119
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Serpinh1
serpin family H member 1
involved_in acts_upstream_of_or_within
IBA ISO IEA
PMID:21873635 MGI:2176070|MGI:2385994|MGI:5505265 (MGI:1890100|PMID:10995453), (MGI:5494537|PMID:22492985) GO_REF:0000107
RGD Ensembl
PMID:10995453 PMID:22492985 , PMID:21873635
GO_REF:0000107 MGI:1890100 MGI:5494537 , RGD:13792537
NCBI chr 1:164,301,010...164,308,306
Ensembl chr 1:164,301,010...164,308,317
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Sfrp2
secreted frizzled-related protein 2
acts_upstream_of_or_within
ISO
MGI:3664776 (MGI:3839034|PMID:19079247)
RGD
PMID:19079247
MGI:3839034
NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
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Tgfb2
transforming growth factor, beta 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:16891397)
AgBase RGD
PMID:16891397
GO_REF:0000024
NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
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Tgfbr1
transforming growth factor, beta receptor 1
acts_upstream_of_or_within
ISO
MGI:2388050 (MGI:3588906|PMID:15993878)
RGD
PMID:15993878
MGI:3588906
NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
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Tnxb
tenascin XB
acts_upstream_of_or_within
ISO
MGI:2181283|MGI:3053791 (MGI:2177884|PMID:11925569), (MGI:3052887|PMID:15194424)
RGD
PMID:11925569 PMID:15194424
MGI:2177884 MGI:3052887
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Vipas39
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3699244|MGI:5816979 (MGI:5804716|PMID:27435297)
Ensembl RGD
PMID:27435297
GO_REF:0000107 MGI:5804716
NCBI chr 6:111,271,283...111,296,013
Ensembl chr 6:111,271,240...111,295,994
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Vps33b
VPS33B, late endosome and lysosome associated
acts_upstream_of_or_within
ISO
MGI:3699244|MGI:5770088 (MGI:5804716|PMID:27435297)
RGD
PMID:27435297
MGI:5804716
NCBI chr 1:142,060,955...142,083,955
Ensembl chr 1:142,060,955...142,083,953
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Atp7a
ATPase copper transporting alpha
acts_upstream_of_or_within
ISO
MGI:1856097|MGI:3588774 (MGI:3616522|PMID:16338116), (MGI:54141|PMID:937819), (MGI:54357|PMID:20889), (MGI:63907|PMID:3385878)
RGD
PMID:20889 PMID:937819 PMID:3385878 PMID:16338116
MGI:3616522 MGI:54141 MGI:54357 MGI:63907
NCBI chr X:77,076,085...77,193,644
Ensembl chr X:77,076,106...77,193,644
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Efemp2
EGF containing fibulin extracellular matrix protein 2
involved_in acts_upstream_of_or_within
ISO
(PMID:18973305), (PMID:27339457) MGI:4410301 (MGI:4397710|PMID:19855011) (MGI:3619755|PMID:16478991), (MGI:4947512|PMID:20019329), (MGI:5660411|PMID:26178373), (MGI:6140729|PMID:28508064), (MGI:6158865|PMID:26711913)
RGD
PMID:16478991 PMID:18973305 PMID:19855011 PMID:20019329 PMID:26178373 PMID:26711913 PMID:27339457 PMID:28508064
MGI:3619755 MGI:4397710 MGI:4947512 MGI:5660411 MGI:6140729 MGI:6158865
NCBI chr 1:220,853,695...220,861,420
Ensembl chr 1:220,854,403...220,861,420
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Eln
elastin
TAS
RGD
PMID:10090127
RGD:731206
NCBI chr12:24,978,478...25,021,864
Ensembl chr12:24,978,483...25,021,863
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Emilin1
elastin microfibril interfacer 1
involved_in
ISO
(MGI:5605894|PMID:25056700)
RGD
PMID:25056700
MGI:5605894
NCBI chr 6:26,821,249...26,829,013
Ensembl chr 6:26,821,255...26,828,972
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Fbln5
fibulin 5
involved_in
ISS ISO IBA
GO_REF:0000024 (MGI:2681470|PMID:11805835), (MGI:2681471|PMID:11805834) (PMID:17035250) PMID:21873635
UniProt RGD
PMID:11805834 PMID:11805835 PMID:17035250 , PMID:21873635
GO_REF:0000024 MGI:2681470 MGI:2681471 , RGD:13792537
NCBI chr 6:125,644,797...125,723,957
Ensembl chr 6:125,644,804...125,723,944
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Lox
lysyl oxidase
acts_upstream_of_or_within
IMP ISO
MGI:3610732 (MGI:3604822|PMID:16192629), (MGI:3609311|PMID:12417550), (MGI:5616293|PMID:23413430)
RGD
PMID:12417550 PMID:16192629 PMID:23413430 , PMID:16432278
MGI:3604822 MGI:3609311 MGI:5616293 , RGD:1600669
NCBI chr18:47,500,320...47,577,819
Ensembl chr18:47,500,330...47,577,819
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Ltbp3
latent transforming growth factor beta binding protein 3
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:221,099,155...221,116,096
Ensembl chr 1:221,099,998...221,116,096
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Ltbp4
latent transforming growth factor beta binding protein 4
involved_in
ISO
(MGI:5638486|PMID:25713297)
RGD
PMID:25713297
MGI:5638486
NCBI chr 1:84,118,046...84,152,095
Ensembl chr 1:84,118,046...84,150,084
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Mfap4
microfibril associated protein 4
involved_in
ISO IBA
(PMID:22355679) PMID:21873635
RGD
PMID:22355679 , PMID:21873635
RGD:13792537
NCBI chr10:47,765,463...47,768,484
Ensembl chr10:47,765,432...47,768,483
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Myh11
myosin heavy chain 11
involved_in
IEA ISO
GO_REF:0000107 (PMID:16444274)
Ensembl RGD
PMID:16444274
GO_REF:0000107
NCBI chr10:764,421...859,184
Ensembl chr10:764,421...859,184
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Thsd4
thrombospondin type 1 domain containing 4
acts_upstream_of_or_within
ISO
(MGI:4453293|PMID:19940141)
RGD
PMID:19940141
MGI:4453293
NCBI chr 8:64,811,940...65,413,498
Ensembl chr 8:64,817,191...65,003,296
G
Tnxb
tenascin XB
involved_in
ISO
(PMID:15102077)
RGD
PMID:15102077
G
Col1a2
collagen type I alpha 2 chain
acts_upstream_of_or_within
ISO
MGI:1856327 (MGI:5468210|PMID:22910579)
RGD
PMID:22910579
MGI:5468210
NCBI chr 4:31,534,225...31,569,152
Ensembl chr 4:31,534,225...31,569,151
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Fkbp10
FKBP prolyl isomerase 10
acts_upstream_of_or_within
ISO
(MGI:6094666|PMID:28774593)
RGD
PMID:28774593
MGI:6094666
NCBI chr10:88,326,337...88,338,199
Ensembl chr10:88,326,080...88,338,207
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Gas6
growth arrest specific 6
involved_in
IEP
PMID:18374201
UniProt
PMID:18374201
RGD:8554638
NCBI chr16:81,213,364...81,243,824
Ensembl chr16:81,213,364...81,243,757
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Gpm6b
glycoprotein m6b
involved_in
IEA ISS ISO
GO_REF:0000107 GO_REF:0000024 (PMID:21638316)
Ensembl UniProt RGD
PMID:21638316
GO_REF:0000024 GO_REF:0000107
NCBI chr X:29,604,607...29,751,174
Ensembl chr X:29,607,075...29,648,403
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Hapln2
hyaluronan and proteoglycan link protein 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:4437572 (MGI:4437139|PMID:20181608)
Ensembl RGD
PMID:20181608
GO_REF:0000107 MGI:4437139
NCBI chr 2:187,395,104...187,402,076
Ensembl chr 2:187,396,349...187,401,786
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Has1
hyaluronan synthase 1
involved_in
IBA ISO
PMID:21873635 (MGI:5508296|PMID:10455188)
RGD
PMID:10455188 , PMID:21873635
MGI:5508296 , RGD:13792537
NCBI chr 1:59,720,612...59,732,409
Ensembl chr 1:59,720,612...59,732,409
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Has2
hyaluronan synthase 2
involved_in
IBA ISO ISS
PMID:21873635 (MGI:5508296|PMID:10455188) GO_REF:0000024
RGD UniProt
PMID:10455188 , PMID:21873635
GO_REF:0000024 MGI:5508296 , RGD:13792537
NCBI chr 7:96,438,046...96,464,049
Ensembl chr 7:96,438,046...96,464,049
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Has3
hyaluronan synthase 3
involved_in
IBA ISO
PMID:21873635 (MGI:5508296|PMID:10455188)
RGD
PMID:10455188 , PMID:21873635
MGI:5508296 , RGD:13792537
NCBI chr19:39,063,298...39,077,745
Ensembl chr19:39,063,998...39,077,722
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Qsox1
quiescin sulfhydryl oxidase 1
involved_in
ISO
(PMID:23867277)
RGD
PMID:23867277
NCBI chr13:73,423,396...73,460,890
Ensembl chr13:73,423,397...73,460,935
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Smpd3
sphingomyelin phosphodiesterase 3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1856877 (MGI:5468210|PMID:22910579)
Ensembl RGD
PMID:22910579
GO_REF:0000107 MGI:5468210
NCBI chr19:38,237,963...38,321,572
Ensembl chr19:38,237,965...38,321,528
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Tgfb1
transforming growth factor, beta 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:4820704|PMID:19734317) (PMID:19734317)
UniProt RGD
PMID:19734317
GO_REF:0000024 MGI:4820704
NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
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Ccn2
cellular communication network factor 2
IMP
positive regulation
RGD
PMID:18613219
RGD:2314619
NCBI chr 1:21,851,657...21,854,773
Ensembl chr 1:21,851,660...21,854,773
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Creb3l1
cAMP responsive element binding protein 3-like 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:4438316|PMID:19767743)
UniProt RGD
PMID:19767743
GO_REF:0000024 MGI:4438316
NCBI chr 3:80,892,433...80,933,283
Ensembl chr 3:80,892,435...80,933,283
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Eng
endoglin
IMP
RGD
PMID:15539634
RGD:1601032
NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
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Tmem38b
transmembrane protein 38B
acts_upstream_of_or_within
ISO
MGI:1921416 (MGI:6141091|PMID:27188440)
RGD
PMID:27188440
MGI:6141091
NCBI chr 5:70,639,156...70,675,055
Ensembl chr 5:70,639,156...70,675,054
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Adamts15
ADAM metallopeptidase with thrombospondin type 1 motif, 15
involved_in
IEA ISO
GO_REF:0000107 (MGI:6508502|PMID:23233679)
Ensembl RGD
PMID:23233679
GO_REF:0000107 MGI:6508502
NCBI chr 8:31,977,001...32,000,378
Ensembl chr 8:31,977,001...32,000,378
G
Adamts5
ADAM metallopeptidase with thrombospondin type 1 motif, 5
involved_in
IEA ISO
GO_REF:0000107 (MGI:6508502|PMID:23233679)
Ensembl RGD
PMID:23233679
GO_REF:0000107 MGI:6508502
NCBI chr11:25,411,174...25,456,639
Ensembl chr11:25,410,975...25,456,836
G
Capg
capping actin protein, gelsolin like
NOT|involved_in
ISO
(PMID:24236012)
RGD
PMID:24236012
NCBI chr 4:100,395,693...100,419,447
Ensembl chr 4:100,407,658...100,419,446
G
Cma1
chymase 1
involved_in
ISO
(PMID:27068509)
RGD
PMID:27068509
NCBI chr15:34,601,037...34,603,819
Ensembl chr15:34,601,037...34,603,819
G
Eng
endoglin
involved_in
ISO
(PMID:18223685)
RGD
PMID:18223685
NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
G
Exoc8
exocyst complex component 8
involved_in
ISO
(PMID:24344185)
RGD
PMID:24344185
NCBI chr19:57,647,305...57,649,794
Ensembl chr19:57,647,291...57,649,827
G
Flot1
flotillin 1
involved_in
ISO
(PMID:21119006)
RGD
PMID:21119006
NCBI chr20:3,427,890...3,438,418
Ensembl chr20:3,427,880...3,438,396
G
Gsn
gelsolin
NOT|involved_in
ISO
(PMID:24236012)
RGD
PMID:24236012
NCBI chr 3:14,456,106...14,508,922
Ensembl chr 3:14,467,330...14,508,911
G
Kif9
kinesin family member 9
involved_in
ISO
(PMID:21119006)
RGD
PMID:21119006
NCBI chr 8:118,737,739...118,795,190
Ensembl chr 8:118,744,229...118,794,992
G
Klk4
kallikrein-related peptidase 4
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:4355346 (MGI:5502300|PMID:22243248)
RGD
PMID:22243248 , PMID:21873635
MGI:5502300 , RGD:13792537
NCBI chr 1:99,828,944...99,834,642
Ensembl chr 1:99,829,351...99,834,216
G
Klk5
kallikrein related-peptidase 5
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:99,781,291...99,793,745
Ensembl chr 1:99,781,237...99,786,330
G
Lamc1
laminin subunit gamma 1
involved_in
ISO
(PMID:15159456)
RGD
PMID:15159456
NCBI chr13:70,656,727...70,783,515
Ensembl chr13:70,658,707...70,783,515
G
Lcp1
lymphocyte cytosolic protein 1
involved_in
ISO
(PMID:24236012)
RGD
PMID:24236012
NCBI chr15:57,170,566...57,277,811
Ensembl chr15:57,221,292...57,277,811
G
Mmp13
matrix metallopeptidase 13
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:3771509|PMID:17987127) (PMID:8576151), (PMID:9065415) GO_REF:0000024
Ensembl RGD UniProt
PMID:8576151 PMID:9065415 PMID:17987127
GO_REF:0000024 GO_REF:0000107 MGI:3771509
NCBI chr 8:5,522,739...5,533,018
Ensembl chr 8:5,522,739...5,533,018
G
Mmp20
matrix metallopeptidase 20
acts_upstream_of_or_within
ISO
MGI:2447874 (MGI:5502300|PMID:22243248)
RGD
PMID:22243248
MGI:5502300
NCBI chr 8:5,823,147...5,875,555
Ensembl chr 8:5,833,359...5,875,232
G
Noxo1
NADPH oxidase organizer 1
involved_in
ISO
(PMID:19755710)
RGD
PMID:19755710
NCBI chr10:14,062,331...14,066,918
Ensembl chr10:14,062,331...14,066,918
G
Plg
plasminogen
involved_in
ISO
(PMID:14699093)
RGD
PMID:14699093
NCBI chr 1:48,521,828...48,563,895
Ensembl chr 1:48,521,772...48,563,776
G
Sh3pxd2b
SH3 and PX domains 2B
involved_in
ISO
(PMID:19755710)
RGD
PMID:19755710
NCBI chr10:17,209,152...17,296,449
Ensembl chr10:17,209,212...17,291,876
G
Tpsab1
tryptase alpha/beta 1
involved_in
ISO
(PMID:27068509)
RGD
PMID:27068509
NCBI chr10:14,701,253...14,703,668
Ensembl chr10:14,701,253...14,703,668
G
Washc1
WASH complex subunit 1
involved_in
ISO
(PMID:24344185)
RGD
PMID:24344185
NCBI chr 9:113,918,914...113,936,861
Ensembl chr 9:113,918,858...113,936,860
G
Wdr72
WD repeat domain 72
acts_upstream_of_or_within
ISO
MGI:5913851 (MGI:5906533|PMID:26247047)
RGD
PMID:26247047
MGI:5906533
NCBI chr 8:80,965,734...81,125,710
Ensembl chr 8:80,965,255...81,039,246
G
Dspp
dentin sialophosphoprotein
acts_upstream_of_or_within
ISO
MGI:2653208 (MGI:5588521|PMID:23900597)
RGD
PMID:23900597
MGI:5588521
NCBI chr14:6,926,972...6,933,079
Ensembl chr14:6,926,976...6,933,070
G
Col4a3
collagen type IV alpha 3 chain
involved_in
ISO
(MGI:3610934|PMID:12631063)
RGD
PMID:12631063
MGI:3610934
NCBI chr 9:88,357,528...88,484,735
Ensembl chr 9:88,357,556...88,485,830
G
Col4a4
collagen type IV alpha 4 chain
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:1857960 (MGI:1347142|PMID:10534397) (PMID:17942953), (PMID:19675380)
RGD
PMID:10534397 PMID:17942953 PMID:19675380 , PMID:21873635
MGI:1347142 , RGD:13792537
NCBI chr 9:88,314,763...88,357,183
Ensembl chr 9:88,232,455...88,357,182
G
Ext1
exostosin glycosyltransferase 1
acts_upstream_of_or_within
ISO
(MGI:4360160|PMID:18480751)
RGD
PMID:18480751
MGI:4360160
NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
G
Mpv17
mitochondrial inner membrane protein MPV17
involved_in
ISO
(MGI:3776221|PMID:16041630)
RGD
PMID:16041630
MGI:3776221
NCBI chr 6:26,585,713...26,600,265
Ensembl chr 6:26,587,443...26,599,511
G
Myo1e
myosin IE
involved_in
ISS ISO IEA
GO_REF:0000024 (MGI:4441423|PMID:19005011) GO_REF:0000107
UniProt RGD Ensembl
PMID:19005011
GO_REF:0000024 GO_REF:0000107 MGI:4441423
NCBI chr 8:76,644,715...76,840,240
Ensembl chr 8:76,754,492...76,839,593
G
Nid1
nidogen 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2682959 (MGI:2680880|PMID:14566019)
Ensembl RGD
PMID:14566019
GO_REF:0000107 MGI:2680880
NCBI chr17:90,553,161...90,627,133
Ensembl chr17:90,553,394...90,627,101
G
Nphs1
NPHS1 adhesion molecule, nephrin
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr 1:88,922,346...88,950,560
Ensembl chr 1:88,922,433...88,950,559
G
Sulf1
sulfatase 1
involved_in
IEA ISO IBA
GO_REF:0000107 UniProtKB:Q8CFG0 (MGI:5306737|PMID:21719793) PMID:21873635
Ensembl RGD
PMID:21719793 , PMID:21873635
GO_REF:0000107 MGI:5306737 , RGD:13792537
NCBI chr 5:5,999,520...6,186,901
Ensembl chr 5:5,999,475...6,186,329
G
Sulf2
sulfatase 2
involved_in
IBA ISO
PMID:21873635 UniProtKB:Q8K007 (MGI:5306737|PMID:21719793)
RGD
PMID:21719793 , PMID:21873635
MGI:5306737 , RGD:13792537
NCBI chr 3:162,791,349...162,872,984
Ensembl chr 3:162,791,355...162,872,831
G
Wt1
WT1 transcription factor
involved_in
ISO ISS
(PMID:19205749) GO_REF:0000024
RGD UniProt
PMID:19205749
GO_REF:0000024
NCBI chr 3:95,133,221...95,180,574
Ensembl chr 3:95,133,713...95,180,564
G
Lamb2
laminin subunit beta 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2138070 (MGI:3664526|PMID:16886065), (MGI:75217|PMID:7670489)
Ensembl RGD
PMID:7670489 PMID:16886065
GO_REF:0000107 MGI:3664526 MGI:75217
NCBI chr 8:117,268,335...117,280,517
Ensembl chr 8:117,268,337...117,280,517
G
Chadl
chondroadherin-like
involved_in
ISO
(PMID:25451920)
RGD
PMID:25451920
NCBI chr 7:122,915,847...122,929,127
Ensembl chr 7:122,922,022...122,926,336
G
Emilin1
elastin microfibril interfacer 1
involved_in
ISO
(MGI:5605894|PMID:25056700)
RGD
PMID:25056700
MGI:5605894
NCBI chr 6:26,821,249...26,829,013
Ensembl chr 6:26,821,255...26,828,972
G
Antxr1
ANTXR cell adhesion molecule 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:5754386 (MGI:5662198|PMID:25572963)
Ensembl RGD
PMID:25572963
GO_REF:0000107 MGI:5662198
NCBI chr 4:118,946,267...119,131,202
Ensembl chr 4:118,946,268...119,131,202
G
Adtrp
androgen-dependent TFPI-regulating protein
involved_in
ISO IEA
(PMID:28341552) GO_REF:0000107
RGD Ensembl
PMID:28341552
GO_REF:0000107
NCBI chr17:22,619,913...22,688,296
Ensembl chr17:22,619,891...22,688,307
G
Notch1
notch receptor 1
involved_in
ISO
(MGI:6158728|PMID:26491108)
RGD
PMID:26491108
MGI:6158728
NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
G
Tnfrsf1a
TNF receptor superfamily member 1A
involved_in
IEA ISO
GO_REF:0000107 UniProtKB:P25119 (MGI:6158728|PMID:26491108)
Ensembl RGD
PMID:26491108
GO_REF:0000107 MGI:6158728
NCBI chr 4:157,864,905...157,877,634
Ensembl chr 4:157,864,969...157,877,633
G
Tnfrsf1b
TNF receptor superfamily member 1B
involved_in
ISO
UniProtKB:P25118 (MGI:6158728|PMID:26491108)
RGD
PMID:26491108
MGI:6158728
NCBI chr 5:163,136,390...163,167,299
Ensembl chr 5:163,136,390...163,167,299
G
Cst3
cystatin C
involved_in
ISO
(PMID:10545518)
RGD
PMID:10545518
NCBI chr 3:143,219,671...143,223,544
Ensembl chr 3:143,219,686...143,223,615
G
Dpp4
dipeptidylpeptidase 4
involved_in
ISS ISO
GO_REF:0000024 (PMID:16651416)
UniProt RGD
PMID:16651416
GO_REF:0000024
NCBI chr 3:48,291,055...48,372,672
Ensembl chr 3:48,291,055...48,372,672
G
Fap
fibroblast activation protein, alpha
involved_in
ISO
(PMID:16651416)
RGD
PMID:16651416
NCBI chr 3:48,467,781...48,536,242
Ensembl chr 3:48,467,781...48,536,235
G
Fap
fibroblast activation protein, alpha
involved_in
ISO
(PMID:10455171)
RGD
PMID:10455171
NCBI chr 3:48,467,781...48,536,242
Ensembl chr 3:48,467,781...48,536,235
G
Clasp1
cytoplasmic linker associated protein 1
involved_in
ISO
UniProtKB:Q86SQ0|UniProtKB:Q86UU1 (PMID:23940118)
RGD
PMID:23940118
NCBI chr13:34,365,038...34,584,651
Ensembl chr13:34,365,147...34,584,651
G
Clasp2
cytoplasmic linker associated protein 2
involved_in
ISO IEA
(PMID:23940118) GO_REF:0000107
RGD Ensembl
PMID:23940118
GO_REF:0000107
NCBI chr 8:122,003,719...122,185,495
Ensembl chr 8:122,003,916...122,185,495
G
Dag1
dystroglycan 1
involved_in
ISO
(PMID:23940118)
RGD
PMID:23940118
NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
G
Phldb1
pleckstrin homology-like domain, family B, member 1
involved_in
IEA ISO
GO_REF:0000107 UniProtKB:Q7Z460|UniProtKB:Q86SQ0 (PMID:23940118)
Ensembl RGD
PMID:23940118
GO_REF:0000107
NCBI chr 8:48,997,189...49,045,176
Ensembl chr 8:48,997,184...49,045,154
G
Phldb2
pleckstrin homology-like domain, family B, member 2
involved_in
ISO
UniProtKB:Q7Z460|UniProtKB:Q86UU1 (PMID:23940118)
RGD
PMID:23940118
NCBI chr11:60,042,879...60,051,229
Ensembl chr11:57,265,732...57,481,589
G
Colgalt1
collagen beta(1-O)galactosyltransferase 1
involved_in
ISO
(PMID:27402836)
RGD
PMID:27402836
NCBI chr16:20,039,969...20,052,277
Ensembl chr16:20,039,969...20,052,276
G
Efemp2
EGF containing fibulin extracellular matrix protein 2
involved_in
ISO
(MGI:5660411|PMID:26178373), (MGI:5695689|PMID:26220971), (MGI:6158865|PMID:26711913)
RGD
PMID:26178373 PMID:26220971 PMID:26711913
MGI:5660411 MGI:5695689 MGI:6158865
NCBI chr 1:220,853,695...220,861,420
Ensembl chr 1:220,854,403...220,861,420
G
Rb1
RB transcriptional corepressor 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:6112863|PMID:29304157)
Ensembl RGD
PMID:29304157
GO_REF:0000107 MGI:6112863
NCBI chr15:55,081,582...55,209,060
Ensembl chr15:55,083,140...55,209,342
G
Emilin1
elastin microfibril interfacer 1
involved_in
ISO
(MGI:5605894|PMID:25056700)
RGD
PMID:25056700
MGI:5605894
NCBI chr 6:26,821,249...26,829,013
Ensembl chr 6:26,821,255...26,828,972
G
Rgcc
regulator of cell cycle
involved_in
ISO
(PMID:21307346)
RGD
PMID:21307346
NCBI chr15:61,551,861...61,564,695
Ensembl chr15:61,551,861...61,564,695
G
Smad3
SMAD family member 3
involved_in
ISO
(PMID:21307346)
RGD
PMID:21307346
NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
G
Sox9
SRY-box transcription factor 9
acts_upstream_of_or_within
ISO
MGI:2176205|MGI:2385468 (MGI:4848001|PMID:20881014)
RGD
PMID:20881014
MGI:4848001
NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
G
Agt
angiotensinogen
IDA
RGD
PMID:21419085
RGD:5129171
NCBI chr19:57,321,594...57,333,460
Ensembl chr19:57,321,640...57,333,433
G
Bmp2
bone morphogenetic protein 2
involved_in
IEA ISO
GO_REF:0000107 (MGI:3640731|PMID:16730346)
Ensembl RGD
PMID:16730346
GO_REF:0000107 MGI:3640731
NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
G
Cpb2
carboxypeptidase B2
IMP
RGD
PMID:23369837
RGD:7243115
NCBI chr15:57,290,849...57,339,762
Ensembl chr15:57,290,849...57,339,760
G
Hdhd2
haloacid dehalogenase-like hydrolase domain containing 2
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr18:73,226,630...73,278,062
Ensembl chr18:73,226,630...73,278,337
G
Ier3ip1
immediate early response 3 interacting protein 1
involved_in
ISO
(PMID:33122427)
RGD
PMID:33122427
NCBI chr 4:132,140,802...132,152,059
Ensembl chr 4:132,140,802...132,151,740
G
Rgcc
regulator of cell cycle
involved_in
ISO
(PMID:19158077)
RGD
PMID:19158077
NCBI chr15:61,551,861...61,564,695
Ensembl chr15:61,551,861...61,564,695
G
Carmil2
capping protein regulator and myosin 1 linker 2
involved_in
ISO
(PMID:26466680), (PMID:26578515)
RGD
PMID:26466680 PMID:26578515
NCBI chr19:37,652,383...37,665,333
Ensembl chr19:37,652,969...37,668,019
G
Clasp1
cytoplasmic linker associated protein 1
involved_in
ISO
(PMID:24859005)
RGD
PMID:24859005
NCBI chr13:34,365,038...34,584,651
Ensembl chr13:34,365,147...34,584,651
G
Clasp2
cytoplasmic linker associated protein 2
involved_in
IEA ISO
GO_REF:0000107 (PMID:24859005)
Ensembl RGD
PMID:24859005
GO_REF:0000107
NCBI chr 8:122,003,719...122,185,495
Ensembl chr 8:122,003,916...122,185,495
G
Ddr2
discoidin domain receptor tyrosine kinase 2
involved_in
ISO
(MGI:2158097|PMID:11723120)
RGD
PMID:11723120
MGI:2158097
NCBI chr13:88,311,639...88,436,561
Ensembl chr13:88,317,145...88,436,789
G
Fscn1
fascin actin-bundling protein 1
involved_in
IEA ISS ISO
GO_REF:0000107 GO_REF:0000024 (PMID:20137952)
Ensembl UniProt RGD
PMID:20137952
GO_REF:0000024 GO_REF:0000107
NCBI chr12:13,655,459...13,668,595
Ensembl chr12:13,656,554...13,668,515
G
Il6
interleukin 6
involved_in
ISO
(PMID:26587789)
RGD
PMID:26587789
NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
G
Meltf
melanotransferrin
involved_in
ISO
(PMID:16713448)
RGD
PMID:16713448
NCBI chr11:72,135,311...72,158,106
Ensembl chr11:72,135,668...72,157,522
G
Pdpn
podoplanin
involved_in
ISS IBA ISO
GO_REF:0000024 PMID:21873635 (PMID:25486435)
UniProt RGD
PMID:25486435 , PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr 5:161,947,137...161,981,441
Ensembl chr 5:161,947,137...161,981,441
G
Tgfb2
transforming growth factor, beta 2
involved_in
ISO
(MGI:5688835|PMID:21984612)
RGD
PMID:21984612
MGI:5688835
NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
G
Abl1
ABL proto-oncogene 1, non-receptor tyrosine kinase
IMP
RGD
PMID:19846571
RGD:8693597
NCBI chr 3:10,041,820...10,145,076
Ensembl chr 3:10,041,826...10,144,388 Ensembl chr 3:10,041,826...10,144,388
G
Cflar
CASP8 and FADD-like apoptosis regulator
IMP
RGD
PMID:24691542
RGD:11341715
NCBI chr 9:65,534,608...65,586,395
Ensembl chr 9:65,534,704...65,587,251
G
Rb1
RB transcriptional corepressor 1
involved_in
ISO
(MGI:6112863|PMID:29304157)
RGD
PMID:29304157
MGI:6112863
NCBI chr15:55,081,582...55,209,060
Ensembl chr15:55,083,140...55,209,342
G
Aebp1
AE binding protein 1
involved_in
ISO IEA ISS
(PMID:29606302) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:29606302
GO_REF:0000024 GO_REF:0000107
NCBI chr14:86,101,253...86,111,323
Ensembl chr14:86,101,277...86,111,306
G
Efemp2
EGF containing fibulin extracellular matrix protein 2
involved_in
ISO
(MGI:5776647|PMID:26690653)
RGD
PMID:26690653
MGI:5776647
NCBI chr 1:220,853,695...220,861,420
Ensembl chr 1:220,854,403...220,861,420
G
Agt
angiotensinogen
involved_in
ISO
UniProtKB:P00797 (PMID:17416596)
RGD
PMID:17416596
NCBI chr19:57,321,594...57,333,460
Ensembl chr19:57,321,640...57,333,433
G
Has2
hyaluronan synthase 2
IMP
RGD
PMID:27094859
RGD:12910548
NCBI chr 7:96,438,046...96,464,049
Ensembl chr 7:96,438,046...96,464,049
G
Notch1
notch receptor 1
involved_in
ISO
(MGI:5298073|PMID:21311046)
RGD
PMID:21311046
MGI:5298073
NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
G
Tie1
tyrosine kinase with immunoglobulin-like and EGF-like domains 1
acts_upstream_of
ISO
(MGI:6370101|PMID:31319059)
RGD
PMID:31319059
MGI:6370101
NCBI chr 5:137,294,544...137,321,116
Ensembl chr 5:137,294,544...137,321,121
G
Ric1
RIC1 homolog, RAB6A GEF complex partner 1
involved_in
ISO
(PMID:31932796)
RGD
PMID:31932796
NCBI chr 1:247,688,778...247,784,219
Ensembl chr 1:247,688,789...247,781,875
G
Ddr1
discoidin domain receptor tyrosine kinase 1
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:3629583|PMID:12065315) GO_REF:0000024 (PMID:12065315)
Ensembl RGD UniProt
PMID:12065315
GO_REF:0000024 GO_REF:0000107 MGI:3629583
NCBI chr20:3,553,430...3,574,959
Ensembl chr20:3,552,929...3,575,780
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Ets1
ETS proto-oncogene 1, transcription factor
IMP
RGD
PMID:16738537
RGD:2313717
NCBI chr 8:33,756,634...33,879,625
Ensembl chr 8:33,816,386...33,879,625
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Fgfr4
fibroblast growth factor receptor 4
involved_in
ISS ISO
GO_REF:0000024 (PMID:20876804)
UniProt RGD
PMID:20876804
GO_REF:0000024
NCBI chr17:9,990,072...10,004,339
Ensembl chr17:9,990,078...10,004,321
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Abl1
ABL proto-oncogene 1, non-receptor tyrosine kinase
acts_upstream_of_or_within
ISO
MGI:87860 (MGI:4840122|PMID:20980600)
RGD
PMID:20980600
MGI:4840122
NCBI chr 3:10,041,820...10,145,076
Ensembl chr 3:10,041,826...10,144,388 Ensembl chr 3:10,041,826...10,144,388
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Abl2
ABL proto-oncogene 2, non-receptor tyrosine kinase
acts_upstream_of_or_within
ISO
MGI:87859 (MGI:4840122|PMID:20980600)
RGD
PMID:20980600
MGI:4840122
NCBI chr13:74,154,533...74,333,244
Ensembl chr13:74,154,835...74,333,244
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Angptl7
angiopoietin like 7
involved_in
ISO
(PMID:21199193)
RGD
PMID:21199193
NCBI chr 5:165,311,794...165,318,361
Ensembl chr 5:165,312,130...165,316,652
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Itgb3
integrin subunit beta 3
acts_upstream_of_or_within
ISO
MGI:2175913 (MGI:5462513|PMID:22984613)
RGD
PMID:22984613
MGI:5462513
NCBI chr10:92,667,869...92,783,413
Ensembl chr10:92,667,869...92,783,410
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Lemd3
LEM domain containing 3
acts_upstream_of_or_within
ISO
MGI:3703328 (MGI:3702795|PMID:16943282)
RGD
PMID:16943282
MGI:3702795
NCBI chr 7:62,976,671...63,045,860
Ensembl chr 7:62,996,336...63,045,728
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Slc2a10
solute carrier family 2 member 10
acts_upstream_of_or_within
ISO
(PMID:26376865)
RGD
PMID:26376865
NCBI chr 3:162,182,156...162,194,610
Ensembl chr 3:162,181,974...162,194,804
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Tcf15
transcription factor 15
acts_upstream_of_or_within
ISO
MGI:1929775 (MGI:5522599|PMID:24038871)
RGD
PMID:24038871
MGI:5522599
NCBI chr 3:147,643,250...147,649,511
Ensembl chr 3:147,643,250...147,649,504
G
Tgfb2
transforming growth factor, beta 2
acts_upstream_of_or_within
ISO
MGI:1888389 (MGI:5140242|PMID:21780244)
RGD
PMID:21780244
MGI:5140242
NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
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Ihh
Indian hedgehog signaling molecule
acts_upstream_of_or_within
ISO
MGI:1934258 (MGI:3766861|PMID:17881493)
RGD
PMID:17881493
MGI:3766861
NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all