Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:hippocampus development
go back to main search page
Accession:GO:0021766 term browser browse the term
Definition:The progression of the hippocampus over time from its initial formation until its mature state.
Synonyms:exact_synonym: hippocampal formation development


show annotations for term's descendants           Sort by:
hippocampus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1C activin A receptor type 1C ISO RGD PMID:8940033 RGD:631880 NCBI chr36:3,534,231...3,583,310
Ensembl chr36:3,541,248...3,613,384 		JBrowse link
G AKAP5 A-kinase anchoring protein 5 ISO RGD PMID:19535604 RGD:2313144 NCBI chr 8:38,891,637...38,902,390
Ensembl chr 8:38,896,840...38,898,126 		JBrowse link
G ALK ALK receptor tyrosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17487225) Ensembl
MGI		 PMID:17487225 GO_REF:0000107 NCBI chr17:23,010,308...23,688,841
Ensembl chr17:23,010,308...23,688,841 		JBrowse link
G ANXA3 annexin A3 ISO RGD PMID:18493952 RGD:2302825 NCBI chr32:3,006,000...3,049,321
Ensembl chr32:3,005,788...3,049,049 		JBrowse link
G ATG16L1 autophagy related 16 like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29078390) Ensembl
MGI		 PMID:29078390 GO_REF:0000107 NCBI chr25:44,761,034...44,800,033
Ensembl chr25:44,761,185...44,798,672 		JBrowse link
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 ISO RGD PMID:16200642 RGD:6906893 NCBI chr38:321,246...420,262
Ensembl chr38:366,656...416,952 		JBrowse link
G BBS1 Bardet-Biedl syndrome 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18032602) Ensembl
MGI		 PMID:18032602 GO_REF:0000107 NCBI chr18:50,816,126...50,835,354 JBrowse link
G BBS2 Bardet-Biedl syndrome 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18032602) Ensembl
MGI		 PMID:18032602 GO_REF:0000107 NCBI chr 2:59,650,439...59,705,728
Ensembl chr 2:59,677,216...59,705,730 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18032602), (PMID:24695551) Ensembl
MGI		 PMID:18032602 PMID:24695551 GO_REF:0000107 NCBI chr30:36,058,932...36,109,206
Ensembl chr30:35,927,233...36,108,381 		JBrowse link
G BCAN brevican involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12370289) Ensembl
MGI		 PMID:12370289 GO_REF:0000107 NCBI chr 7:41,313,578...41,330,178
Ensembl chr 7:41,313,579...41,330,178 		JBrowse link
G CASP3 caspase 3 ISO RGD PMID:18459132 RGD:2293317 NCBI chr16:45,920,074...45,940,507
Ensembl chr16:45,920,071...45,940,505 		JBrowse link
G CDK5 cyclin dependent kinase 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11517264) Ensembl
MGI		 PMID:11517264 GO_REF:0000107 NCBI chr16:15,105,177...15,113,085
Ensembl chr16:15,101,230...15,109,269 		JBrowse link
G CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11517264) Ensembl
MGI		 PMID:11517264 GO_REF:0000107 NCBI chr 9:40,481,111...40,502,689
Ensembl chr 9:40,501,646...40,502,569 		JBrowse link
G CDK5R2 cyclin dependent kinase 5 regulatory subunit 2 acts_upstream_of_or_within ISO (PMID:11517264) MGI PMID:11517264 NCBI chr37:25,528,934...25,535,795
Ensembl chr37:25,529,151...25,530,263 		JBrowse link
G CFL1 cofilin 1 ISO RGD PMID:27073215 RGD:11568695 NCBI chr18:51,404,649...51,408,240
Ensembl chr18:51,401,659...51,408,212 		JBrowse link
G CHRNA2 cholinergic receptor nicotinic alpha 2 subunit part_of ISO RGD PMID:17046198 RGD:152995358 NCBI chr25:30,117,384...30,137,223
Ensembl chr25:30,117,239...30,135,599 		JBrowse link
G CHRNA5 cholinergic receptor nicotinic alpha 5 subunit ISO RGD PMID:15558717 RGD:150530459 NCBI chr13:38,343,966...38,355,534
Ensembl chr13:38,346,104...38,355,468 		JBrowse link
G CRK CRK proto-oncogene, adaptor protein acts_upstream_of_or_within ISO (PMID:19074029) MGI PMID:19074029 NCBI chr 9:45,594,657...45,627,499
Ensembl chr 9:45,598,899...45,627,589 		JBrowse link
G CRK CRK proto-oncogene, adaptor protein involved_in IEA Ensembl GO_REF:0000107
G CRKL CRK like proto-oncogene, adaptor protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19074029) Ensembl
MGI		 PMID:19074029 GO_REF:0000107 NCBI chr26:30,542,276...30,582,479
Ensembl chr26:30,545,311...30,581,964 		JBrowse link
G CYP11A1 cytochrome P450 family 11 subfamily A member 1 ISO RGD PMID:21047951 RGD:4145527 NCBI chr30:37,474,997...37,487,028
Ensembl chr30:37,473,901...37,487,507 		JBrowse link
G CYP17A1 cytochrome P450 family 17 subfamily A member 1 ISO RGD PMID:21047951 RGD:4145527 NCBI chr28:15,292,959...15,298,896
Ensembl chr28:15,293,106...15,298,852 		JBrowse link
G CYP19A1 cytochrome P450 family 19 subfamily A member 1 ISO RGD PMID:21047951 RGD:4145527 NCBI chr30:16,954,020...17,056,728
Ensembl chr30:16,957,215...16,988,353 		JBrowse link
G DAB1 DAB adaptor protein 1 acts_upstream_of_or_within ISO (PMID:18477607) MGI PMID:18477607 NCBI chr 5:51,397,837...52,505,513
Ensembl chr 5:52,231,141...52,502,336 		JBrowse link
G DCLK2 doublecortin like kinase 2 acts_upstream_of_or_within ISO (PMID:19342486) MGI PMID:19342486 NCBI chr15:48,119,227...48,365,807
Ensembl chr15:48,119,001...48,365,732 		JBrowse link
G DCX doublecortin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19342486) Ensembl
MGI		 PMID:19342486 GO_REF:0000107 NCBI chr  X:84,408,762...84,541,157
Ensembl chr  X:84,408,895...84,517,827 		JBrowse link
G DLX1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11163262) Ensembl
MGI		 PMID:11163262 GO_REF:0000107 NCBI chr36:16,485,158...16,489,397
Ensembl chr36:16,484,859...16,487,886 		JBrowse link
G DLX2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:11163262) MGI PMID:11163262 NCBI chr36:16,499,009...16,502,365
Ensembl chr36:16,484,302...16,502,510 		JBrowse link
G DRD1 dopamine receptor D1 acts_upstream_of_or_within ISO (PMID:17360497) MGI PMID:17360497 NCBI chr 4:37,550,454...37,554,641
Ensembl chr 4:37,549,708...37,553,287 		JBrowse link
G EIF2B2 eukaryotic translation initiation factor 2B subunit beta ISO RGD PMID:12850562 RGD:11041879 NCBI chr 8:48,110,521...48,117,175
Ensembl chr 8:48,110,050...48,116,686 		JBrowse link
G EIF2B3 eukaryotic translation initiation factor 2B subunit gamma ISO RGD PMID:12850562 RGD:11041879 NCBI chr15:15,337,421...15,481,427
Ensembl chr15:15,337,483...15,481,425 		JBrowse link
G EIF2B4 eukaryotic translation initiation factor 2B subunit delta ISO RGD PMID:12850562 RGD:11041879 NCBI chr17:21,321,329...21,326,357
Ensembl chr17:21,321,349...21,326,244 		JBrowse link
G EIF2B5 eukaryotic translation initiation factor 2B subunit epsilon ISO RGD PMID:12850562 RGD:11041879 NCBI chr34:17,038,163...17,047,390
Ensembl chr34:17,038,203...17,046,928 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO RGD PMID:18565716 RGD:13204724 NCBI chr 1:251,985...322,081
Ensembl chr 1:252,103...322,718 		JBrowse link
G EPHA5 EPH receptor A5 involved_in ISO (PMID:12124402) UniProt PMID:12124402 NCBI chr13:56,054,247...56,402,583
Ensembl chr13:56,058,800...56,383,301 		JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit ISO RGD PMID:23932971 RGD:9587811 NCBI chr 9:20,271,729...20,292,918
Ensembl chr 9:20,264,552...20,290,712 		JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO RGD PMID:23932971 RGD:9587811 NCBI chr16:1,926,443...1,991,995
Ensembl chr16:1,925,956...1,991,838 		JBrowse link
G FBXO41 F-box protein 41 acts_upstream_of_or_within ISO (PMID:35372812) MGI PMID:35372812 NCBI chr17:49,585,511...49,613,406
Ensembl chr17:49,599,488...49,609,166 		JBrowse link
G FEZ1 fasciculation and elongation protein zeta 1 ISO RGD PMID:14992819 RGD:13208825 NCBI chr 5:9,001,927...9,044,330
Ensembl chr 5:9,001,989...9,044,332 		JBrowse link
G FGF13 fibroblast growth factor 13 involved_in ISO (PMID:22726441) UniProt PMID:22726441 NCBI chr  X:108,658,113...109,156,096
Ensembl chr  X:108,658,941...109,156,594 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22235033) Ensembl
MGI		 PMID:22235033 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G GRIN2A glutamate ionotropic receptor NMDA type subunit 2A ISO RGD PMID:19535712 RGD:2325978 NCBI chr 6:32,132,070...32,678,319
Ensembl chr 6:32,303,121...32,668,960 		JBrowse link
G GRIN2B glutamate ionotropic receptor NMDA type subunit 2B ISO RGD PMID:19535712 RGD:2325978 NCBI chr27:32,470,889...32,883,606
Ensembl chr27:32,471,153...32,877,680 		JBrowse link
G GSK3B glycogen synthase kinase 3 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:23,458,369...23,659,878
Ensembl chr33:23,463,767...23,659,666 		JBrowse link
G HDAC1 histone deacetylase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19380719) Ensembl
MGI		 PMID:19380719 GO_REF:0000107 NCBI chr 2:68,901,339...68,936,473
Ensembl chr 2:68,901,651...68,936,186 		JBrowse link
G HDAC2 histone deacetylase 2 acts_upstream_of_or_within ISO (PMID:19380719) MGI PMID:19380719 NCBI chr12:70,053,822...70,083,491
Ensembl chr12:70,053,297...70,103,578 		JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:22102872 RGD:10002783 NCBI chr 1:75,499,334...75,511,525
Ensembl chr 1:75,499,393...75,511,425 		JBrowse link
G HSD17B3 hydroxysteroid 17-beta dehydrogenase 3 ISO RGD PMID:21047951 RGD:4145527 NCBI chr 1:70,551,013...70,586,364
Ensembl chr 1:70,487,334...70,586,368 		JBrowse link
G HSD17B7 hydroxysteroid 17-beta dehydrogenase 7 ISO RGD PMID:21047951 RGD:4145527 NCBI chr38:19,975,935...19,999,077
Ensembl chr38:19,977,086...19,999,010 		JBrowse link
G HSD3B2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 ISO RGD PMID:21047951 RGD:4145527 NCBI chr17:56,552,945...56,561,062
Ensembl chr17:56,552,945...56,561,062 		JBrowse link
G HTR5A 5-hydroxytryptamine receptor 5A ISO RGD PMID:16572590 RGD:2316993 NCBI chr16:18,142,808...18,151,884
Ensembl chr16:18,142,830...18,152,442 		JBrowse link
G ID4 inhibitor of DNA binding 4, HLH protein acts_upstream_of_or_within ISO (PMID:15469968) MGI PMID:15469968 NCBI chr35:18,358,518...18,360,767
Ensembl chr35:18,357,826...18,359,011
Ensembl chr35:18,357,826...18,359,011 		JBrowse link
G IGF1R insulin like growth factor 1 receptor ISO RGD PMID:22042446 RGD:10403040 NCBI chr 3:41,795,337...42,096,255
Ensembl chr 3:41,794,623...42,090,387 		JBrowse link
G INSR insulin receptor ISO RGD PMID:22042446 RGD:10403040 NCBI chr20:52,017,261...52,136,061
Ensembl chr20:52,021,887...52,136,046 		JBrowse link
G KCNA1 potassium voltage-gated channel subfamily A member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:39,928,347...39,936,753
Ensembl chr27:39,933,825...39,935,312 		JBrowse link
G KCNQ2 potassium voltage-gated channel subfamily Q member 2 acts_upstream_of_or_within ISO (PMID:15608631) MGI PMID:15608631 NCBI chr24:47,060,527...47,089,077
Ensembl chr24:47,060,245...47,089,711 		JBrowse link
G KDM6B lysine demethylase 6B ISO RGD PMID:23932971 RGD:9587811 NCBI chr 5:32,689,000...32,711,026
Ensembl chr 5:32,696,211...32,710,666 		JBrowse link
G KIF14 kinesin family member 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:2,548,407...2,602,371
Ensembl chr 7:2,548,258...2,601,581 		JBrowse link
G KIF5A kinesin family member 5A ISO RGD PMID:9349526 RGD:12792964 NCBI chr10:1,637,007...1,666,790
Ensembl chr10:1,636,932...1,664,767 		JBrowse link
G KIF5B kinesin family member 5B ISO RGD PMID:9349526 RGD:12792964 NCBI chr 2:14,835,906...14,880,896
Ensembl chr 2:14,835,901...14,878,251 		JBrowse link
G KIRREL3 kirre like nephrin family adhesion molecule 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:7,583,530...8,124,045
Ensembl chr 5:7,583,805...8,123,080 		JBrowse link
G LEF1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:10631168) MGI PMID:10631168 NCBI chr32:28,516,002...28,633,759
Ensembl chr32:28,517,108...28,634,019 		JBrowse link
G LHX5 LIM homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10325223) Ensembl
MGI		 PMID:10325223 GO_REF:0000107 NCBI chr26:10,776,991...10,785,820
Ensembl chr26:10,777,242...10,785,815 		JBrowse link
G LMX1A LIM homeobox transcription factor 1 alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:1638738) Ensembl
MGI		 PMID:1638738 GO_REF:0000107 NCBI chr38:17,958,366...18,111,155
Ensembl chr38:17,956,961...18,109,049 		JBrowse link
G LOC491316 midkine involved_in ISO (PMID:10096022) DFLAT PMID:10096022 NCBI chr 9:55,100,491...55,101,081 JBrowse link
G LOC610636 tubulin alpha-1B chain involved_in ISO (PMID:17218254) MGI PMID:17218254 NCBI chr37:25,811,491...25,818,838 JBrowse link
G LRP8 LDL receptor related protein 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17330141) Ensembl
MGI		 PMID:17330141 GO_REF:0000107 NCBI chr 5:55,604,878...55,684,666
Ensembl chr 5:55,604,878...55,699,736 		JBrowse link
G MAS1 MAS1 proto-oncogene, G protein-coupled receptor ISO RGD PMID:1521325 RGD:2316795 NCBI chr 1:49,090,041...49,105,244
Ensembl chr 1:49,090,041...49,105,244 		JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:14751287 RGD:12743658 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994 		JBrowse link
G MFSD2A MFSD2 lysolipid transporter A, lysophospholipid involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:2,966,433...2,979,030
Ensembl chr15:2,966,461...2,978,968 		JBrowse link
G MKKS MKKS centrosomal shuttling protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18032602) Ensembl
MGI		 PMID:18032602 GO_REF:0000107 NCBI chr24:11,887,504...11,914,055
Ensembl chr24:11,898,236...11,913,740 		JBrowse link
G NCOA1 nuclear receptor coactivator 1 ISO RGD PMID:22085911 RGD:5688137 NCBI chr17:18,880,676...19,124,300
Ensembl chr17:18,880,383...19,122,258 		JBrowse link
G NEFH neurofilament heavy chain ISO RGD PMID:14620872 RGD:9743946 NCBI chr26:22,726,523...22,735,129
Ensembl chr26:22,726,526...22,735,125 		JBrowse link
G NEFL neurofilament light chain ISO RGD PMID:14620872 RGD:9743946 NCBI chr25:32,463,361...32,468,965
Ensembl chr25:32,463,452...32,467,224 		JBrowse link
G NEFM neurofilament medium chain ISO RGD PMID:14620872 RGD:9743946 NCBI chr25:32,493,517...32,498,615
Ensembl chr25:32,493,675...32,498,570 		JBrowse link
G NF2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23863479) Ensembl
MGI		 PMID:23863479 GO_REF:0000107 NCBI chr26:22,816,869...22,896,103
Ensembl chr26:22,816,551...22,894,196 		JBrowse link
G NFIX nuclear factor I X involved_in ISO (PMID:18477394), (PMID:23042739), (PMID:23776487), (PMID:23964093) MGI PMID:18477394 PMID:23042739 PMID:23776487 PMID:23964093 NCBI chr20:49,117,087...49,187,023
Ensembl chr20:49,117,943...49,214,788 		JBrowse link
G NKX2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11163262) Ensembl
MGI		 PMID:11163262 GO_REF:0000107
G NME1 non-metastatic cells 1, protein (NM23A) expressed in ISO RGD PMID:18493952 RGD:2302825 NCBI chr 9:26,990,336...26,998,895
Ensembl chr 9:26,990,469...26,998,955 		JBrowse link
G NOG noggin ISO RGD PMID:15171992 RGD:10416525 NCBI chr 9:31,453,604...31,456,060 JBrowse link
G NR4A3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (PMID:15456880) MGI PMID:15456880 NCBI chr11:56,806,506...56,846,997
Ensembl chr11:56,812,804...56,847,689 		JBrowse link
G OGDH oxoglutarate dehydrogenase involved_in IEA Ensembl GO_REF:0000107
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10729324)
(PMID:17330141)		 Ensembl
MGI		 PMID:10729324 PMID:17330141 GO_REF:0000107 NCBI chr 9:46,648,057...46,731,259
Ensembl chr 9:46,648,052...46,771,400 		JBrowse link
G PEBP1 phosphatidylethanolamine binding protein 1 ISO RGD PMID:18493952 RGD:2302825 NCBI chr26:14,522,124...14,526,370
Ensembl chr26:14,500,074...14,529,354 		JBrowse link
G PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 ISO RGD PMID:20819118 RGD:8693633 NCBI chr 1:14,027,741...14,234,229
Ensembl chr 1:14,028,652...14,234,229 		JBrowse link
G PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 ISO RGD PMID:20819118 RGD:8693633 NCBI chr 5:77,428,587...77,506,126
Ensembl chr 5:77,432,517...77,565,801 		JBrowse link
G PLXNA3 plexin A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11683995) Ensembl
MGI		 PMID:11683995 GO_REF:0000107 NCBI chr  X:122,165,460...122,180,727
Ensembl chr  X:122,167,144...122,180,951 		JBrowse link
G PPP1R9B protein phosphatase 1 regulatory subunit 9B ISO RGD PMID:21123436 RGD:10043818 NCBI chr 9:26,135,982...26,152,303
Ensembl chr 9:26,137,464...26,151,810 		JBrowse link
G PTPRS protein tyrosine phosphatase receptor type S involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15842738) Ensembl
MGI		 PMID:15842738 GO_REF:0000107 NCBI chr20:54,575,853...54,672,141
Ensembl chr20:54,575,895...54,672,068 		JBrowse link
G PTPRZ1 protein tyrosine phosphatase receptor type Z1 ISO RGD PMID:10906718 RGD:9589828 NCBI chr14:59,769,553...59,944,111
Ensembl chr14:59,827,650...59,943,315 		JBrowse link
G RAN RAN, member RAS oncogene family ISO RGD PMID:18493952 RGD:2302825 NCBI chr26:1,435,077...1,436,893
Ensembl chr26:1,434,720...1,436,993 		JBrowse link
G RARA retinoic acid receptor alpha ISO RGD PMID:18619947 RGD:8693612 NCBI chr 9:22,254,803...22,298,614
Ensembl chr 9:22,254,806...22,289,459 		JBrowse link
G RELN reelin involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:16,275,822...16,773,875
Ensembl chr18:16,275,837...16,773,875 		JBrowse link
G SCT secretin involved_in ISS UniProt GO_REF:0000024
G SEMA6B semaphorin 6B involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:55,151,913...55,173,434
Ensembl chr20:55,161,818...55,173,135 		JBrowse link
G SLC17A6 solute carrier family 17 member 6 ISO RGD PMID:18502731 RGD:9999204 NCBI chr21:44,015,161...44,056,286
Ensembl chr21:44,016,133...44,054,931 		JBrowse link
G SLC32A1 solute carrier family 32 member 1 ISO RGD PMID:18502731 RGD:9999204 NCBI chr24:27,142,153...27,146,986
Ensembl chr24:27,142,423...27,146,262 		JBrowse link
G SRD5A1 steroid 5 alpha-reductase 1 ISO RGD PMID:8770891 RGD:4892048 NCBI chr34:7,118,814...7,144,828
Ensembl chr34:7,118,814...7,144,828 		JBrowse link
G SRD5A2 steroid 5 alpha-reductase 2 ISO RGD PMID:21047951 RGD:4145527 NCBI chr17:25,017,113...25,056,156
Ensembl chr17:25,017,113...25,056,544 		JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15837932) Ensembl
MGI		 PMID:15837932 GO_REF:0000107 NCBI chr12:11,664,441...11,673,846
Ensembl chr12:11,664,527...11,671,533 		JBrowse link
G TENT2 terminal nucleotidyltransferase 2 ISO RGD PMID:24074826 RGD:9684936 NCBI chr 3:27,273,188...27,335,897
Ensembl chr 3:27,274,519...27,335,783 		JBrowse link
G TP73 tumor protein p73 acts_upstream_of_or_within ISO (PMID:10716451) MGI PMID:10716451 NCBI chr 5:58,194,385...58,241,159
Ensembl chr 5:58,187,826...58,240,839 		JBrowse link
G TSC1 TSC complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17522300) Ensembl
MGI		 PMID:17522300 GO_REF:0000107 NCBI chr 9:51,409,307...51,459,546
Ensembl chr 9:51,425,937...51,454,677 		JBrowse link
G TSKU tsukushi, small leucine rich proteoglycan involved_in ISO (PMID:31983064) UniProt PMID:31983064 NCBI chr21:21,910,333...21,927,758
Ensembl chr21:21,915,956...21,928,119 		JBrowse link
G UBA6 ubiquitin like modifier activating enzyme 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23499007) Ensembl
MGI		 PMID:23499007 GO_REF:0000107 NCBI chr13:58,148,935...58,231,194
Ensembl chr13:58,013,212...58,231,200 		JBrowse link
G UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:21,148,964...21,150,573
Ensembl chr11:21,149,061...21,150,572 		JBrowse link
G USP9X ubiquitin specific peptidase 9 X-linked acts_upstream_of_or_within ISO (PMID:23861879) MGI PMID:23861879 NCBI chr  X:35,522,873...35,676,086 JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10631167) Ensembl
MGI		 PMID:10631167 GO_REF:0000107 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412 		JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19633665) Ensembl
MGI		 PMID:19633665 GO_REF:0000107 NCBI chr 1:111,548,719...111,571,816
Ensembl chr 1:111,548,719...111,571,816 		JBrowse link
G XRN2 5'-3' exoribonuclease 2 ISO RGD PMID:23933240 RGD:9684963 NCBI chr24:2,042,521...2,128,942
Ensembl chr24:2,042,888...2,128,867 		JBrowse link
G YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12796778) MGI
Ensembl		 PMID:12796778 GO_REF:0000107 NCBI chr 9:45,506,830...45,562,081
Ensembl chr 9:45,507,282...45,562,086 		JBrowse link
G ZBTB18 zinc finger and BTB domain containing 18 acts_upstream_of_or_within ISO (PMID:19409883) MGI PMID:19409883 NCBI chr 7:35,123,417...35,130,349
Ensembl chr 7:35,117,209...35,129,134 		JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (PMID:17644613) MGI PMID:17644613 NCBI chr19:46,419,812...46,541,888
Ensembl chr19:46,423,998...46,542,122 		JBrowse link
G ZIC1 Zic family member 1 involved_in ISO (PMID:17507568) MGI PMID:17507568
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:107,822,002...107,833,582
Ensembl chr  X:107,821,948...107,833,597 		JBrowse link
ammon gyrus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP8 LDL receptor related protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:55,604,878...55,684,666
Ensembl chr 5:55,604,878...55,699,736 		JBrowse link
dentate gyrus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATAT1 alpha tubulin acetyltransferase 1 acts_upstream_of_or_within ISO (PMID:23720746) MGI PMID:23720746 NCBI chr12:441,847...456,349
Ensembl chr12:441,895...456,152 		JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO (PMID:30498428) MGI PMID:30498428 NCBI chr30:11,861,119...11,949,451
Ensembl chr30:11,811,339...11,937,353 		JBrowse link
G BTG2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO (PMID:20020054) MGI PMID:20020054 NCBI chr38:70,921...75,149
Ensembl chr38:70,452...72,976 		JBrowse link
G CSF1R colony stimulating factor 1 receptor ISO RGD PMID:33450391 RGD:126781687 NCBI chr 4:58,980,699...59,010,683
Ensembl chr 4:58,980,788...59,010,510 		JBrowse link
G DRD1 dopamine receptor D1 acts_upstream_of_or_within ISO (PMID:17360497) MGI PMID:17360497 NCBI chr 4:37,550,454...37,554,641
Ensembl chr 4:37,549,708...37,553,287 		JBrowse link
G EMX2 empty spiracles homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10729342) Ensembl
MGI		 PMID:10729342 GO_REF:0000107 NCBI chr28:28,002,966...28,009,955
Ensembl chr28:28,003,710...28,009,035 		JBrowse link
G FBXO41 F-box protein 41 acts_upstream_of_or_within ISO (PMID:35372812) MGI PMID:35372812 NCBI chr17:49,585,511...49,613,406
Ensembl chr17:49,599,488...49,609,166 		JBrowse link
G FEZF2 FEZ family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16971467) Ensembl
MGI		 PMID:16971467 GO_REF:0000107 NCBI chr20:28,704,287...28,708,620
Ensembl chr20:28,703,623...28,708,282 		JBrowse link
G FXR1 FMR1 autosomal homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr34:14,129,978...14,192,016
Ensembl chr34:14,130,017...14,191,370 		JBrowse link
G FXR2 FMR1 autosomal homolog 2 involved_in ISO (PMID:21658585) UniProt PMID:21658585 NCBI chr 5:32,510,830...32,525,680
Ensembl chr 5:32,511,338...32,525,683 		JBrowse link
G KCNQ2 potassium voltage-gated channel subfamily Q member 2 acts_upstream_of_or_within ISO (PMID:16464983) MGI PMID:16464983 NCBI chr24:47,060,527...47,089,077
Ensembl chr24:47,060,245...47,089,711 		JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (PMID:18297065) MGI PMID:18297065 NCBI chr11:20,988,516...21,044,151
Ensembl chr11:20,928,655...21,044,090 		JBrowse link
G LARGE1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:21970971) MGI PMID:21970971 NCBI chr10:29,875,381...30,396,934
Ensembl chr10:29,919,521...30,395,787 		JBrowse link
G LEF1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:10631168) MGI PMID:10631168 NCBI chr32:28,516,002...28,633,759
Ensembl chr32:28,517,108...28,634,019 		JBrowse link
G LMX1A LIM homeobox transcription factor 1 alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:1638738) Ensembl
MGI		 PMID:1638738 GO_REF:0000107 NCBI chr38:17,958,366...18,111,155
Ensembl chr38:17,956,961...18,109,049 		JBrowse link
G LOC491316 midkine involved_in ISO (PMID:10096022) DFLAT PMID:10096022 NCBI chr 9:55,100,491...55,101,081 JBrowse link
G LOC610636 tubulin alpha-1B chain involved_in ISO (PMID:21041996) MGI PMID:21041996 NCBI chr37:25,811,491...25,818,838 JBrowse link
G MEF2C myocyte enhancer factor 2C ISO RGD PMID:18949272 RGD:5131610 NCBI chr 3:19,778,997...19,948,203
Ensembl chr 3:19,779,007...19,943,852 		JBrowse link
G NEUROD1 neuronal differentiation 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:10804213)
(PMID:10398678), (PMID:10639171)		 MGI
UniProt		 PMID:10398678 PMID:10639171 PMID:10804213 NCBI chr36:24,853,591...24,857,886 JBrowse link
G NEUROD6 neuronal differentiation 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10804213) Ensembl
MGI		 PMID:10804213 GO_REF:0000107 NCBI chr14:43,913,351...43,916,818
Ensembl chr14:43,914,149...43,915,162 		JBrowse link
G NR2E1 nuclear receptor subfamily 2 group E member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17953618)
(PMID:12527005)		 Ensembl
MGI		 PMID:12527005 PMID:17953618 GO_REF:0000107 NCBI chr12:65,209,177...65,230,274
Ensembl chr12:65,209,542...65,228,998 		JBrowse link
G PIANP PILR alpha associated neural protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:31511635) MGI
Ensembl		 PMID:31511635 GO_REF:0000107 NCBI chr27:38,339,720...38,342,900
Ensembl chr27:38,341,011...38,343,572 		JBrowse link
G POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21970971) Ensembl
MGI		 PMID:21970971 GO_REF:0000107 NCBI chr15:14,176,932...14,187,181
Ensembl chr15:14,178,357...14,187,161 		JBrowse link
G POMT2 protein O-mannosyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21970971) Ensembl
MGI		 PMID:21970971 GO_REF:0000107 NCBI chr 8:50,091,861...50,133,388
Ensembl chr 8:50,091,865...50,133,442 		JBrowse link
G PROX1 prospero homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:11,996,282...12,047,693
Ensembl chr 7:11,996,703...12,044,036 		JBrowse link
G PTEN phosphatase and tensin homolog involved_in ISO (PMID:17706614) CACAO PMID:17706614 NCBI chr26:37,853,148...37,913,176
Ensembl chr26:37,835,661...37,913,176 		JBrowse link
G RELN reelin ISO RGD PMID:15459104 RGD:2317799 NCBI chr18:16,275,822...16,773,875
Ensembl chr18:16,275,837...16,773,875 		JBrowse link
G SCN2A sodium voltage-gated channel alpha subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16464983) Ensembl
MGI		 PMID:16464983 GO_REF:0000107 NCBI chr36:10,472,496...10,605,055
Ensembl chr36:10,472,361...10,602,685 		JBrowse link
G SCT secretin acts_upstream_of_or_within ISO (PMID:21159798) MGI PMID:21159798
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18297065) Ensembl
MGI		 PMID:18297065 GO_REF:0000107 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033 		JBrowse link
G TMEM108 transmembrane protein 108 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:29,992,038...30,331,791
Ensembl chr23:29,992,021...30,396,840 		JBrowse link
G VPS13B vacuolar protein sorting 13 homolog B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:37573958) MGI
Ensembl		 PMID:37573958 GO_REF:0000107 NCBI chr13:1,101,226...1,834,933
Ensembl chr13:1,101,610...1,871,225 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17101
    developmental process 6593
      anatomical structure development 6201
        hippocampus development 138
          ammon gyrus development 1
          dentate gyrus development 32
          hippocampal interneuron differentiation 0
Path 2
Term Annotations click to browse term
  biological_process 17101
    developmental process 6593
      anatomical structure development 6201
        multicellular organism development 5047
          system development 4375
            nervous system development 2697
              central nervous system development 1168
                brain development 882
                  forebrain development 561
                    telencephalon development 389
                      pallium development 273
                        hippocampus development 138
                          ammon gyrus development 1
                          dentate gyrus development 32
                          hippocampal interneuron differentiation 0
paths to the root