BLOC1S6 (biogenesis of lysosomal organelles complex 1 subunit 6) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: BLOC1S6 (biogenesis of lysosomal organelles complex 1 subunit 6) Canis lupus familiaris
Analyze
Symbol: BLOC1S6
Name: biogenesis of lysosomal organelles complex 1 subunit 6 (Ensembl:sulfide quinone oxidoreductase)
RGD ID: 12080795
Description: ENCODES a protein that exhibits actin filament binding (ortholog); identical protein binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); adenosine metabolic process (ortholog); amino acid metabolic process (ortholog); ASSOCIATED WITH AGAT deficiency (ortholog); Bloom syndrome (ortholog); Chediak-Higashi syndrome (ortholog); FOUND IN BLOC-1 complex (ortholog); cell-cell contact zone (ortholog); contractile ring (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: biogenesis of lysosome-related organelles complex 1 subunit 6; biogenesis of lysosome-related organelles complex 1 subunit 6-like; pallidin homolog; PLDN
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13011,861,119 - 11,949,451 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3011,811,339 - 11,937,353 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3011,852,612 - 11,967,661 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03011,999,081 - 12,114,309 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3011,948,076 - 12,141,202 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13011,919,258 - 12,035,681 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03012,025,057 - 12,141,626 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03012,145,073 - 12,262,260 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
BLOC1S6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13011,861,119 - 11,949,451 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3011,811,339 - 11,937,353 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3011,852,612 - 11,967,661 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03011,999,081 - 12,114,309 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3011,948,076 - 12,141,202 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13011,919,258 - 12,035,681 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03012,025,057 - 12,141,626 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03012,145,073 - 12,262,260 (+)NCBIUU_Cfam_GSD_1.0
BLOC1S6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381545,587,123 - 45,609,716 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1545,587,214 - 45,615,945 (+)EnsemblGRCh38hg38GRCh38
GRCh371545,879,321 - 45,901,914 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361543,666,709 - 43,689,201 (+)NCBINCBI36Build 36hg18NCBI36
Build 341543,666,708 - 43,689,200NCBI
Celera1522,770,564 - 22,793,057 (+)NCBICelera
Cytogenetic Map15q21.1NCBI
HuRef1522,702,017 - 22,724,511 (+)NCBIHuRef
CHM1_11545,997,621 - 46,020,116 (+)NCBICHM1_1
T2T-CHM13v2.01543,395,284 - 43,417,878 (+)NCBIT2T-CHM13v2.0
Bloc1s6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392122,580,425 - 122,591,407 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2122,580,423 - 122,591,395 (+)EnsemblGRCm39 Ensembl
GRCm382122,738,505 - 122,749,487 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2122,738,503 - 122,749,475 (+)EnsemblGRCm38mm10GRCm38
MGSCv372122,564,241 - 122,575,223 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362122,429,955 - 122,439,540 (+)NCBIMGSCv36mm8
Celera2123,933,064 - 123,944,057 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.66NCBI
Bloc1s6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83130,269,979 - 130,280,109 (+)NCBIGRCr8
mRatBN7.23109,816,397 - 109,826,528 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3109,816,366 - 109,828,308 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3113,712,759 - 113,722,845 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03122,308,293 - 122,318,379 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03119,968,666 - 119,978,752 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03114,869,478 - 114,880,218 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3114,869,459 - 114,881,590 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03121,407,586 - 121,418,326 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43109,706,842 - 109,716,971 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13109,612,414 - 109,622,544 (+)NCBI
Celera3108,694,425 - 108,704,523 (+)NCBICelera
Cytogenetic Map3q35NCBI
Bloc1s6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554097,899,601 - 7,913,966 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554097,902,125 - 7,913,966 (-)NCBIChiLan1.0ChiLan1.0
BLOC1S6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21634,761,845 - 34,845,817 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11538,938,562 - 39,022,548 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01524,469,225 - 24,553,163 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11542,862,114 - 42,882,321 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1542,862,112 - 42,882,316 (+)Ensemblpanpan1.1panPan2
Bloc1s6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864090,361,030 - 90,378,186 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364718,209,057 - 8,226,353 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364718,209,091 - 8,226,249 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BLOC1S6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1126,165,994 - 126,184,858 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11126,168,944 - 126,184,813 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21140,713,389 - 140,718,531 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BLOC1S6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12637,605,891 - 37,622,302 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2637,604,412 - 37,622,083 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048103,442,042 - 103,468,952 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bloc1s6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473113,777,656 - 13,785,366 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473113,775,414 - 13,789,380 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BLOC1S6
1048 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022412805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022412806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022412807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002621323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002621324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005304768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005304769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005304770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005304771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005316354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005316355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005316356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005347833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005347834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005347835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005347836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005381591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005381592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005381593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005381594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005415400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005415401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005415402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005415403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000021803   ⟹   ENSCAFP00000020252
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3011,923,087 - 11,937,353 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000070949   ⟹   ENSCAFP00000063440
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3011,858,846 - 11,937,353 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000072763   ⟹   ENSCAFP00000053278
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3011,811,339 - 11,937,353 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845054719   ⟹   ENSCAFP00845043038
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3011,948,076 - 12,077,419 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845054722   ⟹   ENSCAFP00845043041
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3011,996,436 - 12,077,419 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845054727   ⟹   ENSCAFP00845043046
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3012,060,534 - 12,077,415 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845054732   ⟹   ENSCAFP00845043051
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3012,060,610 - 12,074,814 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845054736   ⟹   ENSCAFP00845043054
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3012,060,893 - 12,114,281 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845054742   ⟹   ENSCAFP00845043059
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3012,060,893 - 12,114,186 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845054747   ⟹   ENSCAFP00845043064
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3012,060,893 - 12,077,405 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845054749   ⟹   ENSCAFP00845043066
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3012,060,893 - 12,075,037 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845054751   ⟹   ENSCAFP00845043068
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3012,093,130 - 12,141,202 (+)Ensembl
RefSeq Acc Id: XM_022412805   ⟹   XP_022268513
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13011,861,119 - 11,949,451 (+)NCBI
Dog10K_Boxer_Tasha3011,852,612 - 11,940,420 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022412806   ⟹   XP_022268514
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13011,861,126 - 11,946,530 (+)NCBI
Dog10K_Boxer_Tasha3011,852,616 - 11,937,515 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038442225   ⟹   XP_038298153
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03011,999,081 - 12,087,005 (+)NCBI
RefSeq Acc Id: XM_038442226   ⟹   XP_038298154
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03011,999,085 - 12,084,095 (+)NCBI
RefSeq Acc Id: XM_038442227   ⟹   XP_038298155
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03012,060,873 - 12,077,422 (+)NCBI
RefSeq Acc Id: XM_038461241   ⟹   XP_038317169
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3011,913,947 - 11,930,842 (+)NCBI
RefSeq Acc Id: XM_038516682   ⟹   XP_038372610
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13011,919,272 - 12,008,436 (+)NCBI
RefSeq Acc Id: XM_038516683   ⟹   XP_038372611
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13011,919,283 - 12,005,613 (+)NCBI
RefSeq Acc Id: XM_038516684   ⟹   XP_038372612
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13011,982,174 - 11,998,857 (+)NCBI
RefSeq Acc Id: XM_038580315   ⟹   XP_038436243
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03012,145,087 - 12,234,545 (+)NCBI
RefSeq Acc Id: XM_038580316   ⟹   XP_038436244
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03012,145,098 - 12,231,638 (+)NCBI
RefSeq Acc Id: XM_038580317   ⟹   XP_038436245
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03012,208,135 - 12,224,962 (+)NCBI
RefSeq Acc Id: XM_038644599   ⟹   XP_038500527
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03012,025,071 - 12,114,186 (+)NCBI
RefSeq Acc Id: XM_038644600   ⟹   XP_038500528
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03012,025,082 - 12,111,282 (+)NCBI
RefSeq Acc Id: XM_038644601   ⟹   XP_038500529
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03012,087,898 - 12,104,600 (+)NCBI
RefSeq Acc Id: XR_002621323
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13011,861,195 - 11,946,577 (+)NCBI
Dog10K_Boxer_Tasha3011,852,633 - 11,937,561 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005304768
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03011,999,081 - 12,114,309 (+)NCBI
RefSeq Acc Id: XR_005304769
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03012,060,856 - 12,114,300 (+)NCBI
RefSeq Acc Id: XR_005304770
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03011,999,085 - 12,084,137 (+)NCBI
RefSeq Acc Id: XR_005304771
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03011,999,102 - 12,084,141 (+)NCBI
RefSeq Acc Id: XR_005316354
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3011,852,612 - 11,967,661 (+)NCBI
RefSeq Acc Id: XR_005316355
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3011,913,931 - 11,967,652 (+)NCBI
RefSeq Acc Id: XR_005316356
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3011,852,616 - 11,937,557 (+)NCBI
RefSeq Acc Id: XR_005347833
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13011,919,258 - 12,035,681 (+)NCBI
RefSeq Acc Id: XR_005347834
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13011,982,157 - 12,035,672 (+)NCBI
RefSeq Acc Id: XR_005347835
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13011,919,283 - 12,005,575 (+)NCBI
RefSeq Acc Id: XR_005347836
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13011,920,477 - 12,005,579 (+)NCBI
RefSeq Acc Id: XR_005381591
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03012,145,073 - 12,262,260 (+)NCBI
RefSeq Acc Id: XR_005381592
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03012,208,119 - 12,262,251 (+)NCBI
RefSeq Acc Id: XR_005381593
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03012,145,098 - 12,231,680 (+)NCBI
RefSeq Acc Id: XR_005381594
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03012,146,296 - 12,231,684 (+)NCBI
RefSeq Acc Id: XR_005415400
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03012,025,057 - 12,141,626 (+)NCBI
RefSeq Acc Id: XR_005415401
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03012,087,881 - 12,141,617 (+)NCBI
RefSeq Acc Id: XR_005415402
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03012,025,082 - 12,111,324 (+)NCBI
RefSeq Acc Id: XR_005415403
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03012,026,276 - 12,111,328 (+)NCBI
RefSeq Acc Id: XP_022268513   ⟸   XM_022412805
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_022268514   ⟸   XM_022412806
- Peptide Label: isoform X2
- UniProtKB: A0A8I3QBV1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000063440   ⟸   ENSCAFT00000070949
Ensembl Acc Id: ENSCAFP00000020252   ⟸   ENSCAFT00000021803
Ensembl Acc Id: ENSCAFP00000053278   ⟸   ENSCAFT00000072763
RefSeq Acc Id: XP_038372610   ⟸   XM_038516682
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038372611   ⟸   XM_038516683
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038372612   ⟸   XM_038516684
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038500527   ⟸   XM_038644599
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038500528   ⟸   XM_038644600
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038500529   ⟸   XM_038644601
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038298153   ⟸   XM_038442225
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038298154   ⟸   XM_038442226
- Peptide Label: isoform X2
- UniProtKB: A0A8I3QBV1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298155   ⟸   XM_038442227
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N653 (UniProtKB/TrEMBL),   A0A8C0LCH3 (UniProtKB/TrEMBL),   A0A8I3QAZ0 (UniProtKB/TrEMBL),   A0A8I3QBV1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038317169   ⟸   XM_038461241
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N653 (UniProtKB/TrEMBL),   A0A8C0LCH3 (UniProtKB/TrEMBL),   A0A8I3QAZ0 (UniProtKB/TrEMBL),   A0A8I3QBV1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436243   ⟸   XM_038580315
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038436244   ⟸   XM_038580316
- Peptide Label: isoform X2
- UniProtKB: A0A8I3QBV1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436245   ⟸   XM_038580317
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LCH3 (UniProtKB/TrEMBL),   A0A8C0N653 (UniProtKB/TrEMBL),   A0A8I3QAZ0 (UniProtKB/TrEMBL),   A0A8I3QBV1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845043051   ⟸   ENSCAFT00845054732
Ensembl Acc Id: ENSCAFP00845043066   ⟸   ENSCAFT00845054749
Ensembl Acc Id: ENSCAFP00845043038   ⟸   ENSCAFT00845054719
Ensembl Acc Id: ENSCAFP00845043054   ⟸   ENSCAFT00845054736
Ensembl Acc Id: ENSCAFP00845043064   ⟸   ENSCAFT00845054747
Ensembl Acc Id: ENSCAFP00845043041   ⟸   ENSCAFT00845054722
Ensembl Acc Id: ENSCAFP00845043068   ⟸   ENSCAFT00845054751
Ensembl Acc Id: ENSCAFP00845043059   ⟸   ENSCAFT00845054742
Ensembl Acc Id: ENSCAFP00845043046   ⟸   ENSCAFT00845054727

Promoters
RGD ID:13688513
Promoter ID:EPDNEW_C6582
Type:initiation region
Name:BLOC1S6_1
Description:biogenesis of lysosomal organelles complex 1 subunit 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13011,923,047 - 11,923,107EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013745 Ensembl
  ENSCAFG00000057742 UniProtKB/TrEMBL
  ENSCAFG00030012387 UniProtKB/TrEMBL
  ENSCAFG00040023303 UniProtKB/TrEMBL
  ENSCAFG00845030784 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000021803.5 UniProtKB/TrEMBL
  ENSCAFT00000070949.2 UniProtKB/TrEMBL
  ENSCAFT00000096338.1 UniProtKB/TrEMBL
  ENSCAFT00000096476.1 UniProtKB/TrEMBL
  ENSCAFT00000106322.1 UniProtKB/TrEMBL
  ENSCAFT00030023001.1 UniProtKB/TrEMBL
  ENSCAFT00040043294.1 UniProtKB/TrEMBL
  ENSCAFT00845054719.1 UniProtKB/TrEMBL
  ENSCAFT00845054722.1 UniProtKB/TrEMBL
  ENSCAFT00845054727.1 UniProtKB/TrEMBL
  ENSCAFT00845054732.1 UniProtKB/TrEMBL
  ENSCAFT00845054736.1 UniProtKB/TrEMBL
  ENSCAFT00845054742.1 UniProtKB/TrEMBL
  ENSCAFT00845054747 ENTREZGENE
  ENSCAFT00845054747.1 UniProtKB/TrEMBL
  ENSCAFT00845054749.1 UniProtKB/TrEMBL
InterPro BLOC-1_pallidin UniProtKB/TrEMBL
  Snapin/Pallidin/Snn1 UniProtKB/TrEMBL
NCBI Gene BLOC1S6 ENTREZGENE
PANTHER BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 6 UniProtKB/TrEMBL
  BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 6 UniProtKB/TrEMBL
Pfam Snapin_Pallidin UniProtKB/TrEMBL
PIRSF BLOC-1_complex_pallidin UniProtKB/TrEMBL
UniProt A0A8C0LCH3 ENTREZGENE
  A0A8C0N653 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q5D3_CANLF UniProtKB/TrEMBL
  A0A8I3Q5E1_CANLF UniProtKB/TrEMBL
  A0A8I3Q5F6_CANLF UniProtKB/TrEMBL
  A0A8I3Q5I4_CANLF UniProtKB/TrEMBL
  A0A8I3QAZ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3QBV1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3QPV1_CANLF UniProtKB/TrEMBL
  A0A8I3QUY3_CANLF UniProtKB/TrEMBL
  A0A8P0PC54_CANLF UniProtKB/TrEMBL
  A0A8P0PHT9_CANLF UniProtKB/TrEMBL
  A0A8P0SIJ2_CANLF UniProtKB/TrEMBL
  A0A8P0TKG3_CANLF UniProtKB/TrEMBL
  A0A8P0TVB8_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38470 ENTREZGENE