POMT2 (protein O-mannosyltransferase 2) - Rat Genome Database

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Gene: POMT2 (protein O-mannosyltransferase 2) Canis lupus familiaris
Analyze
Symbol: POMT2
Name: protein O-mannosyltransferase 2
RGD ID: 12137840
Description: ENCODES a protein that exhibits dolichyl-phosphate-mannose-protein mannosyltransferase activity (inferred); glycosyltransferase activity (inferred); mannosyltransferase activity (inferred); INVOLVED IN basement membrane organization (ortholog); dentate gyrus development (ortholog); positive regulation of protein O-linked glycosylation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2N (ortholog); FOUND IN cytosol (inferred); endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein O-mannosyl-transferase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1850,091,861 - 50,133,388 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl850,091,865 - 50,133,442 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha849,779,581 - 49,820,925 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0850,325,424 - 50,366,778 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl850,323,356 - 50,366,973 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1849,988,099 - 50,029,629 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0850,011,110 - 50,052,484 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0850,409,323 - 50,450,667 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
POMT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1850,091,861 - 50,133,388 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl850,091,865 - 50,133,442 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha849,779,581 - 49,820,925 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0850,325,424 - 50,366,778 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl850,323,356 - 50,366,973 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1849,988,099 - 50,029,629 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0850,011,110 - 50,052,484 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0850,409,323 - 50,450,667 (-)NCBIUU_Cfam_GSD_1.0
POMT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381477,274,956 - 77,320,883 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1477,274,956 - 77,320,883 (-)EnsemblGRCh38hg38GRCh38
GRCh371477,741,299 - 77,787,226 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361476,811,052 - 76,856,970 (-)NCBINCBI36Build 36hg18NCBI36
Build 341476,811,053 - 76,856,970NCBI
Celera1457,779,861 - 57,825,801 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1457,907,710 - 57,953,334 (-)NCBIHuRef
CHM1_11477,680,748 - 77,726,684 (-)NCBICHM1_1
T2T-CHM13v2.01471,484,305 - 71,530,246 (-)NCBIT2T-CHM13v2.0
Pomt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391287,153,635 - 87,194,742 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1287,153,635 - 87,194,742 (-)EnsemblGRCm39 Ensembl
GRCm381287,106,861 - 87,147,968 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1287,106,861 - 87,147,968 (-)EnsemblGRCm38mm10GRCm38
MGSCv371288,447,816 - 88,488,852 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361287,995,969 - 88,037,005 (-)NCBIMGSCv36mm8
Celera1288,571,489 - 88,612,407 (-)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1241.3NCBI
Pomt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,486,416 - 112,525,799 (-)NCBIGRCr8
mRatBN7.26106,755,462 - 106,794,849 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6106,755,462 - 106,794,849 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6106,923,228 - 106,962,583 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06107,222,064 - 107,261,421 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06106,591,741 - 106,631,092 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06111,137,329 - 111,176,991 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6111,135,349 - 111,176,918 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06120,423,138 - 120,461,156 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46111,242,085 - 111,259,180 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6104,576,761 - 104,616,136 (-)NCBICelera
Cytogenetic Map6q31NCBI
Pomt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554381,179,064 - 1,218,860 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554381,179,064 - 1,218,860 (-)NCBIChiLan1.0ChiLan1.0
POMT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21578,358,485 - 78,404,746 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11477,574,989 - 77,621,250 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01457,827,841 - 57,874,100 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11477,029,625 - 77,075,819 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1477,029,625 - 77,075,806 (-)Ensemblpanpan1.1panPan2
Pomt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864025,927,115 - 25,966,356 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364886,102,524 - 6,141,875 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364886,102,612 - 6,141,842 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POMT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7100,350,460 - 100,392,332 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17100,350,451 - 100,392,164 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27106,564,993 - 106,604,420 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POMT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12454,519,980 - 54,567,584 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2454,519,754 - 54,567,584 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605342,720,189 - 42,767,567 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pomt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473424,595,702 - 24,636,937 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473424,595,748 - 24,636,845 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in POMT2
326 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 16 6 8 8 5 5
Low 5 1 6 6 6 6 6 4 5 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000027201   ⟹   ENSCAFP00000025298
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl850,091,865 - 50,133,442 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845011682   ⟹   ENSCAFP00845009120
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl850,323,356 - 50,366,973 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845011760   ⟹   ENSCAFP00845009180
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl850,323,356 - 50,366,973 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845011844   ⟹   ENSCAFP00845009241
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl850,323,356 - 50,366,973 (-)Ensembl
RefSeq Acc Id: XM_038483911   ⟹   XP_038339839
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1849,988,099 - 50,029,629 (-)NCBI
RefSeq Acc Id: XM_038545401   ⟹   XP_038401329
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0850,409,323 - 50,450,667 (-)NCBI
RefSeq Acc Id: XM_038609495   ⟹   XP_038465423
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0850,011,110 - 50,052,484 (-)NCBI
RefSeq Acc Id: XM_038674317   ⟹   XP_038530245
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0850,325,424 - 50,366,778 (-)NCBI
RefSeq Acc Id: XM_537521   ⟹   XP_537521
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1850,091,861 - 50,133,388 (-)NCBI
Dog10K_Boxer_Tasha849,779,581 - 49,820,925 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_537521   ⟸   XM_537521
- UniProtKB: A0A8C0JIM5 (UniProtKB/TrEMBL),   A0A8I3N0F7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000025298   ⟸   ENSCAFT00000027201
RefSeq Acc Id: XP_038339839   ⟸   XM_038483911
RefSeq Acc Id: XP_038465423   ⟸   XM_038609495
RefSeq Acc Id: XP_038530245   ⟸   XM_038674317
- UniProtKB: A0A8C0JIM5 (UniProtKB/TrEMBL),   A0A8I3N0F7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038401329   ⟸   XM_038545401
- UniProtKB: A0A8C0JIM5 (UniProtKB/TrEMBL),   A0A8I3N0F7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845009241   ⟸   ENSCAFT00845011844
RefSeq Acc Id: ENSCAFP00845009180   ⟸   ENSCAFT00845011760
RefSeq Acc Id: ENSCAFP00845009120   ⟸   ENSCAFT00845011682
Protein Domains
MIR

Promoters
RGD ID:13684295
Promoter ID:EPDNEW_C2363
Type:initiation region
Name:POMT2_1
Description:protein O-mannosyltransferase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1850,133,275 - 50,133,335EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017178 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030005711 UniProtKB/TrEMBL
  ENSCAFG00040016666 UniProtKB/TrEMBL
  ENSCAFG00845006560 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000027201.5 UniProtKB/TrEMBL
  ENSCAFT00000107352.1 UniProtKB/TrEMBL
  ENSCAFT00030010473.1 UniProtKB/TrEMBL
  ENSCAFT00040030786.1 UniProtKB/TrEMBL
  ENSCAFT00040030939.1 UniProtKB/TrEMBL
  ENSCAFT00845011682 ENTREZGENE
  ENSCAFT00845011682.1 UniProtKB/TrEMBL
  ENSCAFT00845011760.1 UniProtKB/TrEMBL
  ENSCAFT00845011844.1 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro GlyclTrfase_39-like UniProtKB/TrEMBL
  Glyco_trans_39/83 UniProtKB/TrEMBL
  MIR_dom_sf UniProtKB/TrEMBL
  MIR_motif UniProtKB/TrEMBL
  PMT_4TMC UniProtKB/TrEMBL
NCBI Gene POMT2 ENTREZGENE
PANTHER PROTEIN O-MANNOSYL-TRANSFERASE 2 UniProtKB/TrEMBL
  PTHR10050 UniProtKB/TrEMBL
Pfam MIR UniProtKB/TrEMBL
  PMT UniProtKB/TrEMBL
  PMT_4TMC UniProtKB/TrEMBL
PROSITE MIR UniProtKB/TrEMBL
SMART MIR UniProtKB/TrEMBL
Superfamily-SCOP SSF82109 UniProtKB/TrEMBL
UniProt A0A8C0JIM5 ENTREZGENE
  A0A8C0MMP4_CANLF UniProtKB/TrEMBL
  A0A8C0STR2_CANLF UniProtKB/TrEMBL
  A0A8I3MY95_CANLF UniProtKB/TrEMBL
  A0A8I3N0F7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N0J4_CANLF UniProtKB/TrEMBL
  A0A8P0TLT7_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:44811 ENTREZGENE