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ONTOLOGY REPORT - ANNOTATIONS


Term:dentate gyrus development
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Accession:GO:0021542 term browser browse the term
Definition:The process whose specific outcome is the progression of the dentate gyrus over time, from its formation to the mature structure. The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus.


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dentate gyrus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atat1 alpha tubulin acetyltransferase 1 acts_upstream_of_or_within ISO MGI:4453011 (MGI:5516166|PMID:23720746) RGD PMID:23720746 MGI:5516166 NCBI chr20:3,351,269...3,364,565
Ensembl chr20:3,351,303...3,364,565
JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO MGI:3525505 (MGI:4418391|PMID:20020054) RGD PMID:20020054 MGI:4418391 NCBI chr13:50,913,185...50,916,944
Ensembl chr13:50,913,180...50,916,982
JBrowse link
G Csf1r colony stimulating factor 1 receptor IMP RGD PMID:33450391 RGD:126781687 NCBI chr18:56,414,493...56,458,300
Ensembl chr18:56,414,488...56,458,300
JBrowse link
G Drd1 dopamine receptor D1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2181426|MGI:3707260 (MGI:3703826|PMID:17360497)
Ensembl
RGD
PMID:17360497 GO_REF:0000107 MGI:3703826 NCBI chr17:11,099,736...11,104,352
Ensembl chr17:11,101,306...11,103,541
JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO MGI:2148858 (MGI:2153372|PMID:10729342) RGD PMID:10729342 MGI:2153372 NCBI chr 1:280,633,938...280,640,946
Ensembl chr 1:280,633,938...280,640,946
JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO MGI:3046867 (MGI:3702790|PMID:16971467) RGD PMID:16971467 MGI:3702790 NCBI chr15:12,825,333...12,831,496
Ensembl chr15:12,827,707...12,831,496
JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:2179048|MGI:2386464 (MGI:3794243|PMID:18297065) RGD PMID:18297065 MGI:3794243 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1933764 (MGI:1351293|PMID:10631168)
Ensembl
RGD
PMID:10631168 GO_REF:0000107 MGI:1351293 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G Lmx1a LIM homeobox transcription factor 1 alpha acts_upstream_of_or_within ISO MGI:1888413 (MGI:49987|PMID:1638738) RGD PMID:1638738 MGI:49987 NCBI chr13:85,916,753...86,061,534
Ensembl chr13:85,918,252...86,061,176
JBrowse link
G Mdk midkine acts_upstream_of_or_within ISO (PMID:10096022) RGD PMID:10096022 NCBI chr 3:80,841,003...80,843,895
Ensembl chr 3:80,841,005...80,842,916
JBrowse link
G Mef2c myocyte enhancer factor 2C IEP RGD PMID:18949272 RGD:5131610 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Neurod1 neuronal differentiation 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:106593 (MGI:1858353|PMID:10804213)
(MGI:1352314|PMID:10639171), (MGI:2159022|PMID:10398678)
UniProt
RGD
PMID:10398678 PMID:10639171 PMID:10804213 GO_REF:0000024 MGI:1352314 MGI:1858353 MGI:2159022 NCBI chr 3:66,414,314...66,417,617
Ensembl chr 3:66,414,308...66,417,741
JBrowse link
G Neurod6 neuronal differentiation 6 acts_upstream_of_or_within ISO MGI:1339708 (MGI:1858353|PMID:10804213) RGD PMID:10804213 MGI:1858353 NCBI chr 4:85,911,861...85,915,107
Ensembl chr 4:85,911,861...85,915,099
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2151350|MGI:2181426 (MGI:3527227|PMID:12527005), (MGI:3763461|PMID:17953618) RGD PMID:12527005 PMID:17953618 MGI:3527227 MGI:3763461 NCBI chr20:47,286,843...47,306,318
Ensembl chr20:47,288,137...47,306,318
JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (MGI:4849596|PMID:20808958) RGD PMID:20808958 MGI:4849596 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (MGI:3759727|PMID:17706614) RGD PMID:17706614 MGI:3759727 NCBI chr 1:251,421,814...251,487,634
Ensembl chr 1:251,421,596...251,487,832
JBrowse link
G Reln reelin IMP RGD PMID:15459104 RGD:2317799 NCBI chr 4:9,347,533...9,774,257
Ensembl chr 4:9,347,528...9,773,670
JBrowse link
G Sct secretin acts_upstream_of_or_within ISO MGI:3815315 (MGI:4939559|PMID:21159798) RGD PMID:21159798 MGI:4939559 NCBI chr 1:214,264,865...214,277,437
Ensembl chr 1:214,264,754...214,265,668
JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2176256|MGI:2179048 (MGI:3794243|PMID:18297065)
Ensembl
RGD
PMID:18297065 GO_REF:0000107 MGI:3794243 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Tmem108 transmembrane protein 108 involved_in ISO (MGI:5825380|PMID:28096412) RGD PMID:28096412 MGI:5825380 NCBI chr 8:111,968,568...112,265,623
Ensembl chr 8:111,970,288...111,984,572
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19612
    developmental process 6792
      anatomical structure development 6265
        dentate gyrus development 20
Path 2
Term Annotations click to browse term
  biological_process 19612
    developmental process 6792
      anatomical structure development 6265
        multicellular organism development 5747
          system development 5290
            nervous system development 2718
              central nervous system development 1266
                brain development 972
                  forebrain development 509
                    telencephalon development 341
                      pallium development 237
                        hippocampus development 123
                          dentate gyrus development 20
paths to the root