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ONTOLOGY REPORT - ANNOTATIONS


Term:dentate gyrus development
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Accession:GO:0021542 term browser browse the term
Definition:The process whose specific outcome is the progression of the dentate gyrus over time, from its formation to the mature structure. The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus.



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dentate gyrus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atat1 alpha tubulin acetyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4453011 (PMID:23720746)
Ensembl
RGD
PMID:23720746 GO_REF:0000107 NCBI chr20:2,844,595...2,857,809
Ensembl chr20:2,844,616...2,861,964
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO MGI:1856982 (PMID:30498428) RGD PMID:30498428 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO MGI:3525505 (PMID:20020054) RGD PMID:20020054 NCBI chr13:45,531,881...45,535,642
Ensembl chr13:45,531,925...45,535,628
JBrowse link
G Csf1r colony stimulating factor 1 receptor IMP RGD PMID:33450391 RGD:126781687 NCBI chr18:54,546,673...54,590,418
Ensembl chr18:54,546,659...54,590,415
JBrowse link
G Drd1 dopamine receptor D1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2181426|MGI:3707260 (PMID:17360497)
Ensembl
RGD
PMID:17360497 GO_REF:0000107 NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002
JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO MGI:2148858 (PMID:10729342) RGD PMID:10729342 NCBI chr 1:258,626,584...258,633,594
Ensembl chr 1:258,626,584...258,633,594
JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO MGI:3046867 (PMID:16971467) RGD PMID:16971467 NCBI chr15:12,768,614...12,777,554
Ensembl chr15:12,773,762...12,777,554
JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:28204491)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:28204491 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:116,884,167...116,937,590
Ensembl chr 2:116,884,248...116,937,590
JBrowse link
G Fxr1-ps1 FMR1 autosomal homolog 1, pseudogene 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024
G Fxr2 FMR1 autosomal homolog 2 involved_in ISO (PMID:21658585) RGD PMID:21658585 NCBI chr10:54,350,577...54,370,964
Ensembl chr10:54,350,131...54,370,964
JBrowse link
G Kcnq2 potassium voltage-gated channel subfamily Q member 2 acts_upstream_of_or_within ISO MGI:98248 (PMID:16464983) RGD PMID:16464983 NCBI chr 3:168,194,776...168,253,831
Ensembl chr 3:168,195,357...168,275,071
JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:2179048|MGI:2386464 (PMID:18297065) RGD PMID:18297065 NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191
JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO MGI:1856965 (PMID:21970971) RGD PMID:21970971 NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1933764 (PMID:10631168)
Ensembl
RGD
PMID:10631168 GO_REF:0000107 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794
JBrowse link
G Lmx1a LIM homeobox transcription factor 1 alpha acts_upstream_of_or_within ISO MGI:1888413 (PMID:1638738) RGD PMID:1638738 NCBI chr13:79,834,614...79,978,253
Ensembl chr13:79,835,019...79,978,253
JBrowse link
G Mdk midkine involved_in IEA
ISO
GO_REF:0000107
(PMID:10096022)
Ensembl
RGD
PMID:10096022 GO_REF:0000107 NCBI chr 3:77,901,134...77,903,997
Ensembl chr 3:77,901,158...77,903,130
JBrowse link
G Mef2c myocyte enhancer factor 2C IEP RGD PMID:18949272 RGD:5131610 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Neurod1 neuronal differentiation 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:10398678), (PMID:10639171)
MGI:106593 (PMID:10804213)
UniProt
RGD
PMID:10398678 PMID:10639171 PMID:10804213 GO_REF:0000024 NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649
JBrowse link
G Neurod6 neuronal differentiation 6 acts_upstream_of_or_within ISO MGI:1339708 (PMID:10804213) RGD PMID:10804213 NCBI chr 4:84,846,659...84,849,905
Ensembl chr 4:84,846,231...84,849,999
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2151350|MGI:2181426 (PMID:12527005), (PMID:17953618) RGD PMID:12527005 PMID:17953618 NCBI chr20:46,050,134...46,071,257
Ensembl chr20:46,050,414...46,073,949
JBrowse link
G Pianp PILR alpha associated neural protein acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:31511635)
GO_REF:0000107
RGD
Ensembl
PMID:31511635 GO_REF:0000107 NCBI chr 4:157,796,425...157,804,842
Ensembl chr 4:157,798,808...157,804,842
JBrowse link
G Pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3623521 (PMID:21970971)
Ensembl
RGD
PMID:21970971 GO_REF:0000107 NCBI chr 5:129,634,274...129,644,150
Ensembl chr 5:129,634,294...129,644,149
JBrowse link
G Pomt2 protein-O-mannosyltransferase 2 acts_upstream_of_or_within ISO MGI:5302103 (PMID:21970971) RGD PMID:21970971 NCBI chr 6:106,755,462...106,794,849
Ensembl chr 6:106,755,462...106,794,849
JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:20808958) RGD PMID:20808958 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (PMID:17706614) RGD PMID:17706614 NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838
JBrowse link
G Reln reelin IMP RGD PMID:15459104 RGD:2317799 NCBI chr 4:12,736,177...13,162,956
Ensembl chr 4:12,736,130...13,162,211
JBrowse link
G Scn2a sodium voltage-gated channel alpha subunit 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1309503 (PMID:16464983)
Ensembl
RGD
PMID:16464983 GO_REF:0000107 NCBI chr 3:50,302,781...50,437,504
Ensembl chr 3:50,302,877...50,437,214
JBrowse link
G Sct secretin acts_upstream_of_or_within ISO MGI:3815315 (PMID:21159798) RGD PMID:21159798 NCBI chr 1:196,382,857...196,383,668
Ensembl chr 1:196,382,856...196,383,658
JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2176256|MGI:2179048 (PMID:18297065)
Ensembl
RGD
PMID:18297065 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829
JBrowse link
G Tmem108 transmembrane protein 108 involved_in ISO (PMID:28096412) RGD PMID:28096412 NCBI chr 8:104,066,081...104,360,172
Ensembl chr 8:104,066,078...104,360,094
JBrowse link
G Tuba1a tubulin, alpha 1A involved_in ISO MGI:3617352 (PMID:21041996) RGD PMID:21041996 NCBI chr 7:130,113,214...130,116,880
Ensembl chr 7:130,081,032...130,196,186
JBrowse link
G Vps13b vacuolar protein sorting 13 homolog B acts_upstream_of_or_within ISO (PMID:37573958) RGD PMID:37573958 NCBI chr 7:66,557,862...67,128,429
Ensembl chr 7:66,558,471...67,128,429
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20217
    developmental process 7043
      anatomical structure development 6547
        dentate gyrus development 32
Path 2
Term Annotations click to browse term
  biological_process 20217
    developmental process 7043
      anatomical structure development 6547
        multicellular organism development 5286
          system development 4570
            nervous system development 2844
              central nervous system development 1211
                brain development 904
                  forebrain development 557
                    telencephalon development 384
                      pallium development 271
                        hippocampus development 139
                          dentate gyrus development 32
paths to the root