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ONTOLOGY REPORT - ANNOTATIONS

Term:dentate gyrus development
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Accession:GO:0021542 term browser browse the term
Definition:The process whose specific outcome is the progression of the dentate gyrus over time, from its formation to the mature structure. The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus.


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dentate gyrus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atat1 alpha tubulin acetyltransferase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:4453011 (MGI:5516166|PMID:23720746)
GO_REF:0000107		 RGD
Ensembl		 PMID:23720746 GO_REF:0000107 MGI:5516166 NCBI chr20:2,844,595...2,857,809
Ensembl chr20:2,844,616...2,861,964 		JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO MGI:3525505 (MGI:4418391|PMID:20020054) RGD PMID:20020054 MGI:4418391 NCBI chr13:45,531,881...45,535,642
Ensembl chr13:45,531,925...45,535,628 		JBrowse link
G Csf1r colony stimulating factor 1 receptor IMP RGD PMID:33450391 RGD:126781687 NCBI chr18:54,546,673...54,590,418
Ensembl chr18:54,546,659...54,590,415 		JBrowse link
G Drd1 dopamine receptor D1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2181426|MGI:3707260 (MGI:3703826|PMID:17360497)		 Ensembl
RGD		 PMID:17360497 GO_REF:0000107 MGI:3703826 NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO MGI:2148858 (MGI:2153372|PMID:10729342) RGD PMID:10729342 MGI:2153372 NCBI chr 1:258,626,584...258,633,594
Ensembl chr 1:258,626,584...258,633,594 		JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO MGI:3046867 (MGI:3702790|PMID:16971467) RGD PMID:16971467 MGI:3702790 NCBI chr15:12,768,614...12,777,554
Ensembl chr15:12,773,762...12,777,554 		JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5904238|PMID:28204491)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:28204491 GO_REF:0000024 GO_REF:0000107 MGI:5904238 NCBI chr 2:116,884,167...116,937,590
Ensembl chr 2:116,884,248...116,937,590 		JBrowse link
G Fxr2 FMR1 autosomal homolog 2 involved_in ISO (MGI:5141571|PMID:21658585) RGD PMID:21658585 MGI:5141571 NCBI chr10:54,350,577...54,370,964
Ensembl chr10:54,350,131...54,370,964 		JBrowse link
G Kcnq2 potassium voltage-gated channel subfamily Q member 2 acts_upstream_of_or_within ISO MGI:98248 (MGI:3796403|PMID:16464983) RGD PMID:16464983 MGI:3796403 NCBI chr 3:168,194,776...168,253,831
Ensembl chr 3:168,195,357...168,275,071 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:2179048|MGI:2386464 (MGI:3794243|PMID:18297065) RGD PMID:18297065 MGI:3794243 NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO MGI:1856965 (MGI:5299254|PMID:21970971) RGD PMID:21970971 MGI:5299254 NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1933764 (MGI:1351293|PMID:10631168)
GO_REF:0000107		 RGD
Ensembl		 PMID:10631168 GO_REF:0000107 MGI:1351293 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Lmx1a LIM homeobox transcription factor 1 alpha acts_upstream_of_or_within ISO MGI:1888413 (MGI:49987|PMID:1638738) RGD PMID:1638738 MGI:49987 NCBI chr13:79,834,614...79,978,253
Ensembl chr13:79,835,019...79,978,253 		JBrowse link
G Mdk midkine involved_in ISO
IEA		 (MGI:2178952|PMID:10096022)
GO_REF:0000107		 RGD
Ensembl		 PMID:10096022 GO_REF:0000107 MGI:2178952 NCBI chr 3:77,901,134...77,903,997
Ensembl chr 3:77,901,158...77,903,130 		JBrowse link
G Mef2c myocyte enhancer factor 2C IEP RGD PMID:18949272 RGD:5131610 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Neurod1 neuronal differentiation 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(MGI:1352314|PMID:10639171), (MGI:2159022|PMID:10398678)
MGI:106593 (MGI:1858353|PMID:10804213)		 UniProt
RGD		 PMID:10398678 PMID:10639171 PMID:10804213 GO_REF:0000024 MGI:1352314 MGI:1858353 MGI:2159022 NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Neurod6 neuronal differentiation 6 acts_upstream_of_or_within ISO MGI:1339708 (MGI:1858353|PMID:10804213) RGD PMID:10804213 MGI:1858353 NCBI chr 4:84,846,659...84,849,905
Ensembl chr 4:84,846,231...84,849,999 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2151350|MGI:2181426 (MGI:3527227|PMID:12527005), (MGI:3763461|PMID:17953618) RGD PMID:12527005 PMID:17953618 MGI:3527227 MGI:3763461 NCBI chr20:46,050,134...46,071,257
Ensembl chr20:46,050,414...46,073,949 		JBrowse link
G Pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3623521 (MGI:5299254|PMID:21970971)
GO_REF:0000107		 RGD
Ensembl		 PMID:21970971 GO_REF:0000107 MGI:5299254 NCBI chr 5:129,634,274...129,644,150
Ensembl chr 5:129,634,294...129,644,149 		JBrowse link
G Pomt2 protein-O-mannosyltransferase 2 acts_upstream_of_or_within ISO MGI:5302103 (MGI:5299254|PMID:21970971) RGD PMID:21970971 MGI:5299254 NCBI chr 6:106,755,462...106,794,849
Ensembl chr 6:106,755,462...106,794,849 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (MGI:4849596|PMID:20808958) RGD PMID:20808958 MGI:4849596 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (MGI:3759727|PMID:17706614) RGD PMID:17706614 MGI:3759727 NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838 		JBrowse link
G Reln reelin IMP RGD PMID:15459104 RGD:2317799 NCBI chr 4:12,736,177...13,162,956
Ensembl chr 4:12,736,130...13,162,211 		JBrowse link
G Scn2a sodium voltage-gated channel alpha subunit 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1309503 (MGI:3796403|PMID:16464983)
GO_REF:0000107		 RGD
Ensembl		 PMID:16464983 GO_REF:0000107 MGI:3796403 NCBI chr 3:50,302,781...50,437,504
Ensembl chr 3:50,302,877...50,437,214 		JBrowse link
G Sct secretin acts_upstream_of_or_within ISO MGI:3815315 (MGI:4939559|PMID:21159798) RGD PMID:21159798 MGI:4939559 NCBI chr 1:196,382,857...196,383,668
Ensembl chr 1:196,382,856...196,383,658 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2176256|MGI:2179048 (MGI:3794243|PMID:18297065)		 Ensembl
RGD		 PMID:18297065 GO_REF:0000107 MGI:3794243 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Tmem108 transmembrane protein 108 involved_in ISO (MGI:5825380|PMID:28096412) RGD PMID:28096412 MGI:5825380 NCBI chr 8:104,066,081...104,360,172
Ensembl chr 8:104,066,078...104,360,094 		JBrowse link
G Tuba1a tubulin, alpha 1A involved_in ISO MGI:3617352 (MGI:5903588|PMID:21041996) RGD PMID:21041996 MGI:5903588 NCBI chr 7:130,113,214...130,116,880
Ensembl chr 7:130,081,032...130,196,186 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19553
    developmental process 6909
      anatomical structure development 6435
        dentate gyrus development 28
Path 2
Term Annotations click to browse term
  biological_process 19553
    developmental process 6909
      anatomical structure development 6435
        multicellular organism development 5184
          system development 4463
            nervous system development 2734
              central nervous system development 1189
                brain development 885
                  forebrain development 549
                    telencephalon development 380
                      pallium development 268
                        hippocampus development 137
                          dentate gyrus development 28
paths to the root